Rw7G027950
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004859
Physical Location & Seq
Forward (+)
37059248 .. 37061205
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G027950.1

Sequence Viewer

Length: 864 bp
ATGGGTCCTCAACAACATCACCAGATGAGGAGTGACTCTAGTTATCGTCCAGATTTGAATTTTTTTCCATCACAACTGTGTCTCTCAAAAACCACCTTTGGAGTCGTGGCGAATTCGGAAATGGGTTATGGTGTTCATGACAGAAAGAGCGCCTTGTCTCTGAATCTTGTTGGAGATGAATCTGATCATGATGACGTTATACAGACCACCGCTGCTGGCGAAACTAAGCTTTGTGTTAGAGGCCATTGGAGGCCAGCTGAAGACTCTAAACTCAAAGAACTTGTGGCCCAGTTTGGTCCTCAAAACTGGAACTTGATTGCTGAGCATCTTGATGGCAGATCAGGGAAAAGTTGCAGACTGAGGTGGTTTAACCAGCTAGATCCAAGGATCAACAGAAGGGCTTTCAGTGAGGAAGAAGAAGAGAGGCTTTTATCTGCTCATAGACTTTATGGCAACAAATGGGCCATGATTGCGAGGCTCTTCCCTGGAAGGACTGATAATGCTGTCAAGAACCATTGGCATGTCATCATGGCAAGAGTGCACAGAGAGCACTCCAACGTTTACAAGAGAAGAAAGCCCTCTTCTAATTCTCAGGCTGTTATTATTCCTCAACATGATCATGATCATGGTCAAGAAGATGGGGCTAAGAACAATGCCTCTAGTGATCGTTCAACAATCTCAATCAACGCCAGTAATGATGAATCTGGTTCAGCAGCCTCTGCCTCAACGTGTACTAATCTCTCCCTCACTCCCTCAAACACACCACTTCTTCCCACTTTTTTCAAGAACACCAATCCATTTCAGCAACACAAAACCTCTGGATCACAAATGGGTTGCAGGCGCTGGCAGGATCAAGGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

287

Amino Acids

32.36

Weight (kDa)

8.82

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 80 - 126 4.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 83 - 143 1.1e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 132 - 174 3.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 135 - 181 5.6e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 210
AclI AACGTT 1 cut(s) 558
AclWI GGATC 4 cut(s) 374, 395, 829, 858
AcsI RAATTY 2 cut(s) 58, 112
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 1 cut(s) 733
AflIII ACRYGT 1 cut(s) 728
AgsI TTSAA 3 cut(s) 58, 672, 784
AjnI CCWGG 1 cut(s) 484
AleI CACNNNNGTG 1 cut(s) 76
AluBI AGCT 3 cut(s) 229, 257, 376
AluI AGCT 3 cut(s) 229, 257, 376
Alw21I GWGCWC 2 cut(s) 543, 552
Alw26I GTCTC 2 cut(s) 86, 162
Alw44I GTGCAC 1 cut(s) 539
AlwI GGATC 4 cut(s) 374, 395, 829, 858
AlwNI CAGNNNCTG 2 cut(s) 719, 843
AoxI GGCC 4 cut(s) 241, 251, 285, 462
ApaLI GTGCAC 1 cut(s) 539
ApeKI GCWGC 2 cut(s) 212, 713
ApoI RAATTY 2 cut(s) 58, 112
AspLEI GCGC 2 cut(s) 152, 843
AspS9I GGNCC 4 cut(s) 5, 286, 296, 462
AsuHPI GGTGA 1 cut(s) 11
AvaII GGWCC 2 cut(s) 5, 296
BaeGI GKGCMC 1 cut(s) 543
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 2 cut(s) 543, 552
BbvI GCAGC 2 cut(s) 199, 725
BccI CCATC 3 cut(s) 76, 326, 632
BciT130I CCWGG 1 cut(s) 486
BclI TGATCA 3 cut(s) 184, 616, 622
BcoDI GTCTC 2 cut(s) 86, 162
BfaI CTAG 3 cut(s) 39, 377, 660
BfoI RGCGCY 2 cut(s) 153, 844
BisI GCNGC 2 cut(s) 213, 714
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 2 cut(s) 214, 715
Bme1390I CCNGG 1 cut(s) 486
Bme18I GGWCC 2 cut(s) 5, 296
BmgT120I GGNCC 4 cut(s) 5, 286, 296, 462
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 486
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 267
Bpu1102I GCTNAGC 1 cut(s) 321
BsaBI GATNNNNATC 1 cut(s) 621
BsaJI CCNNGG 2 cut(s) 383, 484
Bse1I ACTGG 3 cut(s) 289, 311, 690
Bse8I GATNNNNATC 1 cut(s) 621
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 383, 484
BseJI GATNNNNATC 1 cut(s) 621
BseMII CTCAG 3 cut(s) 312, 350, 605
BseNI ACTGG 3 cut(s) 289, 311, 690
BseRI GAGGAG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 543
BseXI GCAGC 2 cut(s) 199, 725
BshFI GGCC 4 cut(s) 243, 253, 287, 464
BsiHKAI GWGCWC 2 cut(s) 543, 552
BsmAI GTCTC 2 cut(s) 86, 162
BsnI GGCC 4 cut(s) 243, 253, 287, 464
Bsp1286I GDGCHC 2 cut(s) 543, 552
Bsp143I GATC 9 cut(s) 184, 338, 379, 387, 616, 622, 664, 821, 850
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 1 cut(s) 210
BspANI GGCC 4 cut(s) 243, 253, 287, 464
BspCNI CTCAG 3 cut(s) 313, 351, 604
BspHI TCATGA 3 cut(s) 136, 187, 619
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 4 cut(s) 374, 395, 829, 858
BspQI GCTCTTC 1 cut(s) 485
BsrI ACTGG 3 cut(s) 289, 311, 690
BssECI CCNNGG 2 cut(s) 383, 484
BssMI GATC 9 cut(s) 184, 338, 379, 387, 616, 622, 664, 821, 850
BssT1I CCWWGG 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 1 cut(s) 78
Bst6I CTCTTC 3 cut(s) 414, 485, 586
BstAPI GCANNNNNTGC 1 cut(s) 719
BstC8I GCNNGC 4 cut(s) 217, 255, 839, 845
BstDEI CTNAG 5 cut(s) 225, 321, 359, 591, 645
BstH2I RGCGCY 2 cut(s) 153, 844
BstHHI GCGC 2 cut(s) 152, 843
BstKTI GATC 9 cut(s) 187, 341, 382, 390, 619, 625, 667, 824, 853
BstMAI GTCTC 2 cut(s) 86, 162
BstMBI GATC 9 cut(s) 184, 338, 379, 387, 616, 622, 664, 821, 850
BstMWI GCNNNNNNNGC 3 cut(s) 470, 547, 719
BstNI CCWGG 1 cut(s) 486
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 1 cut(s) 484
BstSLI GKGCMC 1 cut(s) 543
BstV1I GCAGC 2 cut(s) 199, 725
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 4 cut(s) 243, 253, 287, 464
BtsIMutI CAGTG 1 cut(s) 412
Cac8I GCNNGC 4 cut(s) 217, 255, 839, 845
CaiI CAGNNNCTG 2 cut(s) 719, 843
CciI TCATGA 3 cut(s) 136, 187, 619
CfoI GCGC 2 cut(s) 152, 843
Cfr13I GGNCC 4 cut(s) 5, 286, 296, 462
Csp6I GTAC 1 cut(s) 732
CviAII CATG 8 cut(s) 137, 188, 466, 521, 529, 614, 620, 626
CviQI GTAC 1 cut(s) 732
DdeI CTNAG 5 cut(s) 225, 321, 359, 591, 645
DpnI GATC 9 cut(s) 186, 340, 381, 389, 618, 624, 666, 823, 852
DpnII GATC 9 cut(s) 184, 338, 379, 387, 616, 622, 664, 821, 850
Eam1104I CTCTTC 3 cut(s) 414, 485, 586
EarI CTCTTC 3 cut(s) 414, 485, 586
Eco130I CCWWGG 1 cut(s) 383
Eco47I GGWCC 2 cut(s) 5, 296
Eco57I CTGAAG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 5
EcoRI GAATTC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 383
FaeI CATG 8 cut(s) 140, 191, 469, 524, 532, 617, 623, 629
FalI AAGNNNNNCTT 4 cut(s) 137, 169, 411, 443
FatI CATG 8 cut(s) 136, 187, 465, 520, 528, 613, 619, 625
FbaI TGATCA 3 cut(s) 184, 616, 622
Fnu4HI GCNGC 2 cut(s) 213, 714
Fsp4HI GCNGC 2 cut(s) 213, 714
FspBI CTAG 3 cut(s) 39, 377, 660
GlaI GCGC 2 cut(s) 151, 842
GluI GCNGC 2 cut(s) 213, 714
HaeII RGCGCY 2 cut(s) 153, 844
HaeIII GGCC 4 cut(s) 243, 253, 287, 464
HhaI GCGC 2 cut(s) 152, 843
Hin1II CATG 8 cut(s) 140, 191, 469, 524, 532, 617, 623, 629
Hin6I GCGC 2 cut(s) 150, 841
HinP1I GCGC 2 cut(s) 150, 841
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 6 cut(s) 35, 102, 163, 179, 263, 701
HphI GGTGA 1 cut(s) 11
Hpy166II GTNNAC 3 cut(s) 541, 562, 732
Hpy188I TCNGA 3 cut(s) 118, 162, 184
Hpy188III TCNNGA 9 cut(s) 50, 137, 188, 329, 508, 620, 632, 784, 819
Hpy8I GTNNAC 3 cut(s) 541, 562, 732
HpyAV CCTTC 2 cut(s) 390, 483
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4IV ACGT 3 cut(s) 195, 558, 728
HpyCH4V TGCA 3 cut(s) 354, 541, 837
HpyF10VI GCNNNNNNNGC 3 cut(s) 470, 547, 719
HpyF3I CTNAG 5 cut(s) 225, 321, 359, 591, 645
HpySE526I ACGT 3 cut(s) 195, 558, 728
Hsp92II CATG 8 cut(s) 140, 191, 469, 524, 532, 617, 623, 629
HspAI GCGC 2 cut(s) 150, 841
Ksp22I TGATCA 3 cut(s) 184, 616, 622
Kzo9I GATC 9 cut(s) 184, 338, 379, 387, 616, 622, 664, 821, 850
LguI GCTCTTC 1 cut(s) 485
Lsp1109I GCAGC 2 cut(s) 199, 725
LweI GCATC 1 cut(s) 334
MaeI CTAG 3 cut(s) 39, 377, 660
MaeII ACGT 3 cut(s) 195, 558, 728
MaeIII GTNAC 1 cut(s) 32
MalI GATC 9 cut(s) 186, 340, 381, 389, 618, 624, 666, 823, 852
MboI GATC 9 cut(s) 184, 338, 379, 387, 616, 622, 664, 821, 850
MboII GAAGA 9 cut(s) 272, 425, 428, 431, 472, 573, 582, 647, 761
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 2 cut(s) 543, 552
MluCI AATT 3 cut(s) 58, 112, 586
MlyI GAGTC 3 cut(s) 29, 111, 257
MmeI TCCRAC 2 cut(s) 151, 579
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 5 cut(s) 76, 330, 519, 618, 624
MspA1I CMGCKG 2 cut(s) 212, 257
MspR9I CCNGG 1 cut(s) 486
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 3 cut(s) 470, 547, 719
NdeII GATC 9 cut(s) 184, 338, 379, 387, 616, 622, 664, 821, 850
NlaIII CATG 8 cut(s) 140, 191, 469, 524, 532, 617, 623, 629
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 32
NspI RCATGY 1 cut(s) 524
OliI CACNNNNGTG 1 cut(s) 76
PagI TCATGA 3 cut(s) 136, 187, 619
PciSI GCTCTTC 1 cut(s) 485
PfeI GAWTC 3 cut(s) 163, 179, 701
PkrI GCNGC 2 cut(s) 214, 715
PleI GAGTC 3 cut(s) 29, 110, 257
PpsI GAGTC 3 cut(s) 29, 110, 257
PpuMI RGGWCCY 1 cut(s) 5
Psp1406I AACGTT 1 cut(s) 558
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 4 cut(s) 5, 286, 296, 462
PspPPI RGGWCCY 1 cut(s) 5
PstNI CAGNNNCTG 2 cut(s) 719, 843
PsuI RGATCY 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 733
RsaNI GTAC 1 cut(s) 732
RseI CAYNNNNRTG 5 cut(s) 76, 330, 519, 618, 624
SapI GCTCTTC 1 cut(s) 485
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 2 cut(s) 213, 714
Sau3AI GATC 9 cut(s) 184, 338, 379, 387, 616, 622, 664, 821, 850
Sau96I GGNCC 4 cut(s) 5, 286, 296, 462
SchI GAGTC 3 cut(s) 29, 111, 257
ScrFI CCNGG 1 cut(s) 486
SduI GDGCHC 2 cut(s) 543, 552
SetI ASST 9 cut(s) 98, 198, 231, 259, 365, 378, 561, 731, 818
SfaNI GCATC 1 cut(s) 334
SinI GGWCC 2 cut(s) 5, 296
SmiMI CAYNNNNRTG 5 cut(s) 76, 330, 519, 618, 624
Sse9I AATT 3 cut(s) 58, 112, 586
SsiI CCGC 1 cut(s) 210
SspMI CTAG 3 cut(s) 39, 377, 660
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 1 cut(s) 383
TaaI ACNGT 1 cut(s) 78
TaiI ACGT 3 cut(s) 198, 561, 731
TasI AATT 3 cut(s) 58, 112, 586
TatI WGTACW 1 cut(s) 731
TfiI GAWTC 3 cut(s) 163, 179, 701
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 2 cut(s) 212, 713
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 3 cut(s) 125, 192, 714
TspRI CASTG 1 cut(s) 412
VneI GTGCAC 1 cut(s) 539
VpaK11BI GGWCC 2 cut(s) 5, 296
XapI RAATTY 2 cut(s) 58, 112
XceI RCATGY 1 cut(s) 524
XspI CTAG 3 cut(s) 39, 377, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.