Rroxscaffold_3G00239860
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004859
Physical Location & Seq
Forward (+)
30751550 .. 30753457
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239860.1

Sequence Viewer

Length: 1026 bp
ATGGGTCCTCAACAGCAACACCAGATGAGGAGTGACTCTAGTTATCGTCAAGATTTGAACTTTTTCCCATCACAACTGTGTCTCTCAAAAACCACCTTTGGAGTCGTGGCTAATCCGGAAATGGGTTATGGTGTTCATGACAGAAAGAGCACCATGTATCTGAATCTTGTTGGAGATGAATCTGATCATGATGACGTCATACAGAGCATCGCTGCTGGCAAAACTAAGCTTTGTGTTAGAGGCCATTGGAGGCCAGCTGAAGACTCCAAACTCCAAGAACTTGTGGCCCAGTTTGGTCCTCAAAACTGGAACTTGATTGCTGAGCATCTTGATGGCAGATCAGGGAAAAGTTGCAGACTGAGGTGGTTTAACCAGCTAGATCCAAGGATCAACAGAAGGGCTTTCAGTGAGGAAGAAGAAGAGAGGCTTTTATCTGCTCATAGACTTTATGGCAACAAATGGGCCATGATTGCGAGGCTCTTCCCTGGAAGGACTGATAATGCTGTCAAGAACCATTGGCATGTCATCATGGCTAGAAAGCACAGAGAGCAGTCCAACGTTTACAAGAGAAGAAAGCCCTCCTCTAGTTCTCAGCCTATTATTATTCCTCATCATGATCATGATGAAGCAGATGGGACTAAAAATAATGCCTTTAGTGATCGTTCAACGATCTCAATCAACACCAGTACTAATGATGAATCTGGCTCAGCAGCCTCTGCCTCAACATGTACTAATCTTTCCCTCACTCCCTCAAACAGACCACTTGTTCCCAGCTTTTTCAAGAACATCAATCCATTTCAGCAGCACAAAATCTTTGGATCACAAATGATTGCAGAGTCTGGCAGGATCAAGGGCAATGAGAACGGTCAGTCATCAGTTTCAAACTCAGAAACTTCTGGAGATGAATCAGTACTTACCACCTACAGGACCAACAATAATAATGTTTCTTCCATGTCTGGAGAAGATCAAAATGAGAAGACGAGCGTGATGCCATTCATTGATTTCCTTGGAGTAGGCTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

341

Amino Acids

38.28

Weight (kDa)

7.78

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 80 - 126 1.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 83 - 143 1e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 132 - 174 4.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 135 - 176 9.5e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AccIII TCCGGA 1 cut(s) 115
AclI AACGTT 1 cut(s) 558
AclWI GGATC 4 cut(s) 374, 395, 826, 854
AcuI CTGAAG 1 cut(s) 279
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 3 cut(s) 688, 730, 912
AfiI CCNNNNNNNGG 2 cut(s) 122, 924
AflIII ACRYGT 1 cut(s) 725
AgsI TTSAA 4 cut(s) 58, 666, 781, 882
AjnI CCWGG 1 cut(s) 484
AleI CACNNNNGTG 1 cut(s) 76
AluBI AGCT 4 cut(s) 229, 257, 376, 774
AluI AGCT 4 cut(s) 229, 257, 376, 774
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 4 cut(s) 374, 395, 826, 854
AlwNI CAGNNNCTG 2 cut(s) 716, 839
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 4 cut(s) 241, 251, 285, 462
ApeKI GCWGC 3 cut(s) 212, 710, 802
Asp700I GAANNNNTTC 1 cut(s) 62
AspS9I GGNCC 5 cut(s) 5, 286, 296, 462, 927
AvaII GGWCC 3 cut(s) 5, 296, 927
BbsI GAAGAC 2 cut(s) 267, 983
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 3 cut(s) 199, 722, 814
BccI CCATC 3 cut(s) 76, 326, 626
BcgI CGANNNNNNTGC 2 cut(s) 970, 1004
BciT130I CCWGG 1 cut(s) 486
BclI TGATCA 2 cut(s) 184, 616
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 4 cut(s) 39, 377, 534, 585
BfmI CTRYAG 1 cut(s) 922
BisI GCNGC 3 cut(s) 213, 711, 803
BlpI GCTNAGC 2 cut(s) 321, 706
BlsI GCNGC 3 cut(s) 214, 712, 804
BmcAI AGTACT 2 cut(s) 688, 912
Bme1390I CCNGG 1 cut(s) 486
Bme18I GGWCC 3 cut(s) 5, 296, 927
BmgT120I GGNCC 5 cut(s) 5, 286, 296, 462, 927
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 486
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 3 cut(s) 216, 334, 978
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 2 cut(s) 267, 983
BpmI CTGGAG 2 cut(s) 918, 978
Bpu1102I GCTNAGC 2 cut(s) 321, 706
BsaBI GATNNNNATC 1 cut(s) 674
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 3 cut(s) 383, 484, 1006
BsaWI WCCGGW 1 cut(s) 115
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 924
Bse1I ACTGG 3 cut(s) 289, 311, 684
Bse3DI GCAATG 1 cut(s) 862
Bse8I GATNNNNATC 1 cut(s) 674
BseAI TCCGGA 1 cut(s) 115
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 3 cut(s) 383, 484, 1006
BseJI GATNNNNATC 1 cut(s) 674
BseLI CCNNNNNNNGG 2 cut(s) 122, 924
BseMI GCAATG 1 cut(s) 862
BseMII CTCAG 5 cut(s) 312, 350, 605, 720, 900
BseNI ACTGG 3 cut(s) 289, 311, 684
BseRI GAGGAG 2 cut(s) 43, 571
BseXI GCAGC 3 cut(s) 199, 722, 814
BseYI CCCAGC 1 cut(s) 770
BshFI GGCC 4 cut(s) 243, 253, 287, 464
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 2 cut(s) 122, 924
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 649
BsnI GGCC 4 cut(s) 243, 253, 287, 464
Bsp1286I GDGCHC 1 cut(s) 152
Bsp13I TCCGGA 1 cut(s) 115
Bsp1720I GCTNAGC 2 cut(s) 321, 706
BspANI GGCC 4 cut(s) 243, 253, 287, 464
BspCNI CTCAG 5 cut(s) 313, 351, 604, 719, 899
BspEI TCCGGA 1 cut(s) 115
BspHI TCATGA 4 cut(s) 136, 187, 613, 619
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 4 cut(s) 374, 395, 826, 854
BspQI GCTCTTC 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 862
BsrI ACTGG 3 cut(s) 289, 311, 684
BssECI CCNNGG 3 cut(s) 383, 484, 1006
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 383, 1006
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 2 cut(s) 78, 866
Bst6I CTCTTC 2 cut(s) 414, 485
BstACI GRCGYC 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 716
BstC8I GCNNGC 2 cut(s) 217, 255
BstDEI CTNAG 6 cut(s) 225, 321, 359, 591, 706, 886
BstMAI GTCTC 1 cut(s) 86
BstMWI GCNNNNNNNGC 3 cut(s) 470, 547, 716
BstNI CCWGG 1 cut(s) 486
BstNSI RCATGY 2 cut(s) 524, 729
BstSCI CCNGG 1 cut(s) 484
BstSFI CTRYAG 1 cut(s) 922
BstV1I GCAGC 3 cut(s) 199, 722, 814
BstV2I GAAGAC 2 cut(s) 267, 983
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 4 cut(s) 243, 253, 287, 464
BtgZI GCGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 217, 255
CaiI CAGNNNCTG 2 cut(s) 716, 839
CciI TCATGA 4 cut(s) 136, 187, 613, 619
Cfr13I GGNCC 5 cut(s) 5, 286, 296, 462, 927
Csp6I GTAC 3 cut(s) 687, 729, 911
CviQI GTAC 3 cut(s) 687, 729, 911
DdeI CTNAG 6 cut(s) 225, 321, 359, 591, 706, 886
Eam1104I CTCTTC 2 cut(s) 414, 485
EarI CTCTTC 2 cut(s) 414, 485
Eco130I CCWWGG 2 cut(s) 383, 1006
Eco47I GGWCC 3 cut(s) 5, 296, 927
Eco57I CTGAAG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 2 cut(s) 383, 1006
ErhI CCWWGG 2 cut(s) 383, 1006
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 1 cut(s) 649
FbaI TGATCA 2 cut(s) 184, 616
Fnu4HI GCNGC 3 cut(s) 213, 711, 803
Fsp4HI GCNGC 3 cut(s) 213, 711, 803
FspBI CTAG 4 cut(s) 39, 377, 534, 585
GluI GCNGC 3 cut(s) 213, 711, 803
GsaI CCCAGC 1 cut(s) 774
GsuI CTGGAG 2 cut(s) 918, 978
HaeIII GGCC 4 cut(s) 243, 253, 287, 464
HapII CCGG 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 195
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 8 cut(s) 35, 102, 163, 179, 263, 698, 836, 905
HpaII CCGG 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 562
Hpy188I TCNGA 3 cut(s) 162, 184, 889
Hpy8I GTNNAC 1 cut(s) 562
HpyAV CCTTC 2 cut(s) 390, 483
HpyCH4III ACNGT 2 cut(s) 78, 866
HpyCH4IV ACGT 2 cut(s) 195, 558
HpyCH4V TGCA 2 cut(s) 354, 833
HpyF10VI GCNNNNNNNGC 3 cut(s) 470, 547, 716
HpyF3I CTNAG 6 cut(s) 225, 321, 359, 591, 706, 886
HpySE526I ACGT 2 cut(s) 195, 558
Hsp92I GRCGYC 1 cut(s) 195
Kpn2I TCCGGA 1 cut(s) 115
Ksp22I TGATCA 2 cut(s) 184, 616
LguI GCTCTTC 1 cut(s) 485
Lsp1109I GCAGC 3 cut(s) 199, 722, 814
LweI GCATC 3 cut(s) 216, 334, 978
MaeI CTAG 4 cut(s) 39, 377, 534, 585
MaeII ACGT 2 cut(s) 195, 558
MaeIII GTNAC 1 cut(s) 32
MboII GAAGA 9 cut(s) 272, 425, 428, 431, 472, 582, 939, 974, 988
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 152
MlyI GAGTC 4 cut(s) 29, 111, 257, 845
MmeI TCCRAC 2 cut(s) 151, 579
MroI TCCGGA 1 cut(s) 115
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 2 cut(s) 369, 1024
MslI CAYNNNNRTG 4 cut(s) 76, 330, 519, 618
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 486
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 3 cut(s) 470, 547, 716
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 32
NspI RCATGY 2 cut(s) 524, 729
OliI CACNNNNGTG 1 cut(s) 76
PagI TCATGA 4 cut(s) 136, 187, 613, 619
PciI ACATGT 1 cut(s) 725
PciSI GCTCTTC 1 cut(s) 485
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 4 cut(s) 163, 179, 698, 905
PkrI GCNGC 3 cut(s) 214, 712, 804
PleI GAGTC 4 cut(s) 29, 110, 257, 844
PpsI GAGTC 4 cut(s) 29, 110, 257, 844
PpuMI RGGWCCY 1 cut(s) 5
PscI ACATGT 1 cut(s) 725
Psp1406I AACGTT 1 cut(s) 558
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 484
PspFI CCCAGC 1 cut(s) 770
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 5 cut(s) 5, 286, 296, 462, 927
PspPPI RGGWCCY 1 cut(s) 5
PstNI CAGNNNCTG 2 cut(s) 716, 839
PsuI RGATCY 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 3 cut(s) 688, 730, 912
RsaNI GTAC 3 cut(s) 687, 729, 911
RseI CAYNNNNRTG 4 cut(s) 76, 330, 519, 618
SapI GCTCTTC 1 cut(s) 485
SaqAI TTAA 2 cut(s) 369, 1024
SatI GCNGC 3 cut(s) 213, 711, 803
Sau96I GGNCC 5 cut(s) 5, 286, 296, 462, 927
ScaI AGTACT 2 cut(s) 688, 912
SchI GAGTC 4 cut(s) 29, 111, 257, 845
ScrFI CCNGG 1 cut(s) 486
SduI GDGCHC 1 cut(s) 152
SetI ASST 9 cut(s) 98, 198, 231, 259, 365, 378, 561, 776, 923
SfaNI GCATC 3 cut(s) 216, 334, 978
SfcI CTRYAG 1 cut(s) 922
SinI GGWCC 3 cut(s) 5, 296, 927
SmiMI CAYNNNNRTG 4 cut(s) 76, 330, 519, 618
SspMI CTAG 4 cut(s) 39, 377, 534, 585
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 2 cut(s) 383, 1006
TaaI ACNGT 2 cut(s) 78, 866
TaiI ACGT 2 cut(s) 198, 561
TatI WGTACW 3 cut(s) 686, 728, 910
TfiI GAWTC 4 cut(s) 163, 179, 698, 905
Tru1I TTAA 2 cut(s) 369, 1024
Tru9I TTAA 2 cut(s) 369, 1024
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 3 cut(s) 212, 710, 802
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 6 cut(s) 125, 192, 639, 711, 918, 985
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 3 cut(s) 5, 296, 927
XceI RCATGY 2 cut(s) 524, 729
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 4 cut(s) 39, 377, 534, 585
ZraI GACGTC 1 cut(s) 196
ZrmI AGTACT 2 cut(s) 688, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.