Rh7BG321500
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004859
Physical Location & Seq
Forward (+)
31450839 .. 31497607
46769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG321500.1

Sequence Viewer

Length: 744 bp
ATGGGTCCTCAACAACATCACCAGATGAGGAGTGACTCTAGTTATCGTCAAGATTTGAACTTTTTTCCATCTCAACTGTGTCTCTCAAAAACCTCCTTTGGAGTCGTGGCTAATTCGGAAATGGGTTATGGTGTTCATGACAGAAAGAGCGCCTTGTCTCTGAATCTTGTTGGAGATGAATCTGATCATGATGATGTTATACAGAGCGCTGCTGGCAAAACTAAACTTTGTGTTAGAGGCCATTGGAGGCCAGCTGAAGACTCTAAACTCAAACAACTTGTGGCCCAGTTTGGTCCTCAAAACTGGAACTTGATTGCTGAGCATCTTGATGGCAGATCAGGGAAAAGTTGCAGACTGAGGTGGTTTAACCAGCTAGATCCAAGGATCAACAGAAGGGCTTTCAGTGAGGAAGAAGAAGAGAGGCTTTTATCTGCTCATAGACTTTATGGCAACAAATGGGCCATGATTGCGAGGCTCTTCCCTGGAAGGACTGATAATGCTGTCAAGAACCATTGGCATGTCATCATGGCTAGAATGCACAGAGAGCAATCCAACGTTTACAAGAGAAGAAAGCCCTCTTCTAATTCTCAGGCTGTTATTATTCCTCAACATGATCATGATCATGATCATGGTCAAGAAGATGGGGCTAAGAACAATGCCTCTAGTGATCGTTCAACAATCTCAATCAACACCAGTAATGATGAATCTGGCTCAGCAGCCTCTGCCTCAACATTTATTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

247

Amino Acids

27.98

Weight (kDa)

8.78

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 79 - 125 3.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 82 - 142 4.2e-18 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 131 - 173 2.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 134 - 182 1.8e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 555
AclWI GGATC 2 cut(s) 371, 392
AcuI CTGAAG 1 cut(s) 276
AfeI AGCGCT 1 cut(s) 208
AgsI TTSAA 2 cut(s) 58, 675
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 2 cut(s) 254, 373
AluI AGCT 2 cut(s) 254, 373
Alw26I GTCTC 2 cut(s) 86, 162
AlwI GGATC 2 cut(s) 371, 392
AlwNI CAGNNNCTG 1 cut(s) 722
Aor51HI AGCGCT 1 cut(s) 208
AoxI GGCC 4 cut(s) 238, 248, 282, 459
ApeKI GCWGC 2 cut(s) 209, 716
AspLEI GCGC 2 cut(s) 152, 209
AspS9I GGNCC 4 cut(s) 5, 283, 293, 459
AsuHPI GGTGA 1 cut(s) 11
AvaII GGWCC 2 cut(s) 5, 293
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 196, 728
BccI CCATC 3 cut(s) 76, 323, 635
BciT130I CCWGG 1 cut(s) 483
BclI TGATCA 4 cut(s) 184, 613, 619, 625
BcoDI GTCTC 2 cut(s) 86, 162
BfaI CTAG 5 cut(s) 39, 374, 531, 663, 742
BfoI RGCGCY 2 cut(s) 153, 210
BisI GCNGC 2 cut(s) 210, 717
BlpI GCTNAGC 2 cut(s) 318, 712
BlsI GCNGC 2 cut(s) 211, 718
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 2 cut(s) 5, 293
BmgT120I GGNCC 4 cut(s) 5, 283, 293, 459
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 483
BmrI ACTGGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 264
Bpu1102I GCTNAGC 2 cut(s) 318, 712
BsaBI GATNNNNATC 2 cut(s) 618, 624
BsaJI CCNNGG 2 cut(s) 380, 481
Bse1I ACTGG 3 cut(s) 286, 308, 693
Bse8I GATNNNNATC 2 cut(s) 618, 624
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 380, 481
BseJI GATNNNNATC 2 cut(s) 618, 624
BseMII CTCAG 4 cut(s) 309, 347, 602, 726
BseNI ACTGG 3 cut(s) 286, 308, 693
BseRI GAGGAG 1 cut(s) 43
BseXI GCAGC 2 cut(s) 196, 728
BshFI GGCC 4 cut(s) 240, 250, 284, 461
BsmAI GTCTC 2 cut(s) 86, 162
BsmI GAATGC 1 cut(s) 540
BsnI GGCC 4 cut(s) 240, 250, 284, 461
Bsp143I GATC 8 cut(s) 184, 335, 376, 384, 613, 619, 625, 667
Bsp1720I GCTNAGC 2 cut(s) 318, 712
BspANI GGCC 4 cut(s) 240, 250, 284, 461
BspCNI CTCAG 4 cut(s) 310, 348, 601, 725
BspHI TCATGA 4 cut(s) 136, 187, 616, 622
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 371, 392
BspQI GCTCTTC 1 cut(s) 482
BsrI ACTGG 3 cut(s) 286, 308, 693
BssECI CCNNGG 2 cut(s) 380, 481
BssMI GATC 8 cut(s) 184, 335, 376, 384, 613, 619, 625, 667
BssT1I CCWWGG 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 78
Bst6I CTCTTC 3 cut(s) 411, 482, 583
BstAPI GCANNNNNTGC 1 cut(s) 722
BstC8I GCNNGC 2 cut(s) 214, 252
BstDEI CTNAG 5 cut(s) 318, 356, 588, 648, 712
BstH2I RGCGCY 2 cut(s) 153, 210
BstHHI GCGC 2 cut(s) 152, 209
BstKTI GATC 8 cut(s) 187, 338, 379, 387, 616, 622, 628, 670
BstMAI GTCTC 2 cut(s) 86, 162
BstMBI GATC 8 cut(s) 184, 335, 376, 384, 613, 619, 625, 667
BstMWI GCNNNNNNNGC 4 cut(s) 213, 467, 544, 722
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 481
BstV1I GCAGC 2 cut(s) 196, 728
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 4 cut(s) 240, 250, 284, 461
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 214, 252
CaiI CAGNNNCTG 1 cut(s) 722
CciI TCATGA 4 cut(s) 136, 187, 616, 622
CfoI GCGC 2 cut(s) 152, 209
Cfr13I GGNCC 4 cut(s) 5, 283, 293, 459
CviAII CATG 9 cut(s) 137, 188, 463, 518, 526, 611, 617, 623, 629
DdeI CTNAG 5 cut(s) 318, 356, 588, 648, 712
DpnI GATC 8 cut(s) 186, 337, 378, 386, 615, 621, 627, 669
DpnII GATC 8 cut(s) 184, 335, 376, 384, 613, 619, 625, 667
Eam1104I CTCTTC 3 cut(s) 411, 482, 583
EarI CTCTTC 3 cut(s) 411, 482, 583
Eco130I CCWWGG 1 cut(s) 380
Eco47I GGWCC 2 cut(s) 5, 293
Eco47III AGCGCT 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 380
FaeI CATG 9 cut(s) 140, 191, 466, 521, 529, 614, 620, 626, 632
FalI AAGNNNNNCTT 4 cut(s) 137, 169, 408, 440
FatI CATG 9 cut(s) 136, 187, 462, 517, 525, 610, 616, 622, 628
FbaI TGATCA 4 cut(s) 184, 613, 619, 625
Fnu4HI GCNGC 2 cut(s) 210, 717
Fsp4HI GCNGC 2 cut(s) 210, 717
FspBI CTAG 5 cut(s) 39, 374, 531, 663, 742
GlaI GCGC 2 cut(s) 151, 208
GluI GCNGC 2 cut(s) 210, 717
HaeII RGCGCY 2 cut(s) 153, 210
HaeIII GGCC 4 cut(s) 240, 250, 284, 461
HhaI GCGC 2 cut(s) 152, 209
Hin1II CATG 9 cut(s) 140, 191, 466, 521, 529, 614, 620, 626, 632
Hin6I GCGC 2 cut(s) 150, 207
HinP1I GCGC 2 cut(s) 150, 207
HinfI GANTC 6 cut(s) 35, 102, 163, 179, 260, 704
HphI GGTGA 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 3 cut(s) 118, 162, 184
Hpy188III TCNNGA 8 cut(s) 50, 137, 188, 326, 505, 617, 623, 635
Hpy8I GTNNAC 1 cut(s) 559
HpyAV CCTTC 2 cut(s) 387, 480
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 2 cut(s) 351, 538
HpyF10VI GCNNNNNNNGC 4 cut(s) 213, 467, 544, 722
HpyF3I CTNAG 5 cut(s) 318, 356, 588, 648, 712
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 9 cut(s) 140, 191, 466, 521, 529, 614, 620, 626, 632
HspAI GCGC 2 cut(s) 150, 207
Ksp22I TGATCA 4 cut(s) 184, 613, 619, 625
Kzo9I GATC 8 cut(s) 184, 335, 376, 384, 613, 619, 625, 667
LguI GCTCTTC 1 cut(s) 482
Lsp1109I GCAGC 2 cut(s) 196, 728
LweI GCATC 1 cut(s) 331
MaeI CTAG 5 cut(s) 39, 374, 531, 663, 742
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 1 cut(s) 32
MalI GATC 8 cut(s) 186, 337, 378, 386, 615, 621, 627, 669
MboI GATC 8 cut(s) 184, 335, 376, 384, 613, 619, 625, 667
MboII GAAGA 8 cut(s) 269, 422, 425, 428, 469, 570, 579, 650
MflI RGATCY 1 cut(s) 376
MluCI AATT 2 cut(s) 112, 583
MlyI GAGTC 3 cut(s) 29, 111, 254
MmeI TCCRAC 2 cut(s) 151, 576
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 6 cut(s) 192, 327, 516, 615, 621, 627
MspA1I CMGCKG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 540
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 4 cut(s) 213, 467, 544, 722
NdeII GATC 8 cut(s) 184, 335, 376, 384, 613, 619, 625, 667
NlaIII CATG 9 cut(s) 140, 191, 466, 521, 529, 614, 620, 626, 632
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 32
NspI RCATGY 1 cut(s) 521
PagI TCATGA 4 cut(s) 136, 187, 616, 622
PciSI GCTCTTC 1 cut(s) 482
PctI GAATGC 1 cut(s) 540
PfeI GAWTC 3 cut(s) 163, 179, 704
PkrI GCNGC 2 cut(s) 211, 718
PleI GAGTC 3 cut(s) 29, 110, 254
PpsI GAGTC 3 cut(s) 29, 110, 254
PpuMI RGGWCCY 1 cut(s) 5
Psp1406I AACGTT 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 4 cut(s) 5, 283, 293, 459
PspPPI RGGWCCY 1 cut(s) 5
PstNI CAGNNNCTG 1 cut(s) 722
PsuI RGATCY 1 cut(s) 376
PvuII CAGCTG 1 cut(s) 254
RseI CAYNNNNRTG 6 cut(s) 192, 327, 516, 615, 621, 627
SapI GCTCTTC 1 cut(s) 482
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 2 cut(s) 210, 717
Sau3AI GATC 8 cut(s) 184, 335, 376, 384, 613, 619, 625, 667
Sau96I GGNCC 4 cut(s) 5, 283, 293, 459
SchI GAGTC 3 cut(s) 29, 111, 254
ScrFI CCNGG 1 cut(s) 483
SetI ASST 5 cut(s) 95, 256, 362, 375, 558
SfaNI GCATC 1 cut(s) 331
SinI GGWCC 2 cut(s) 5, 293
SmiMI CAYNNNNRTG 6 cut(s) 192, 327, 516, 615, 621, 627
Sse9I AATT 2 cut(s) 112, 583
SspMI CTAG 5 cut(s) 39, 374, 531, 663, 742
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 1 cut(s) 380
TaaI ACNGT 1 cut(s) 78
TaiI ACGT 1 cut(s) 558
TasI AATT 2 cut(s) 112, 583
TfiI GAWTC 3 cut(s) 163, 179, 704
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 2 cut(s) 209, 716
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 3 cut(s) 125, 192, 717
TspRI CASTG 1 cut(s) 409
VpaK11BI GGWCC 2 cut(s) 5, 293
XceI RCATGY 1 cut(s) 521
XspI CTAG 5 cut(s) 39, 374, 531, 663, 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.