RLG00000002267
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004859
Physical Location & Seq
Forward (+)
30981287 .. 30982388
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002267

Sequence Viewer

Length: 897 bp
ATGGGTTATGGTGTTCATGATAGAAAGAGCACCATGTATCTGAATCTTGTTGGAGATGAATCTGATCATGATAATGTTATACAGAGCACCGCTGCTGGCAAAACTAAGCTTTGTGTTAGAGGCCATTGGAGGCCAGCTGAAGACTCCAAACTCAAAGAACTTGTTGCCCAGTTTGGTCCTCAAAACTGGAACTTGATTGCTGAGCATCTTGATGGCAGATCAGGGAAAAGTTGCAGACTGAGGTGGTTTAACCAGCTAGATCCAAGGATCAACAGAAGGGCTTTCAATGAGGAAGAAGAAGAGAGGCTTTTATCTGCCCATAGACTTTATGGCAACAAATGGGCCATGATCGCGAGGCTTTTCCCTGGAAGGACTGATAATGCTGTCAAGAACCATTGGCATGTCATCGTGGCTAGAAAGCACAGAGAGCAATCCAACGTTTACAAGAGAAGAAAGCCCTCCTCTAGTTCTCAGCCTATTATTATTCCTCATCATGATCATGATGAAGAAGATGGGACTAAGAATAATGCCTTTAGTGATCGTTCAACGATCTCAATCAACACCAGTAATGATGAATCTGGCTCAGCAGCCTCTGCCTCAACATGTACTAATCTTTCCCTCACTCCCTCAAACAGACCACTTGTTCCCAGCTTTTTCAAGAACATCAATCCATTTCAGCAACACAAAATCTTTGGATTACAAATGAAGTCTGGCAGGATCAAGGGCAATGAGAACGGTCATTCATCAGTTTCAAACTCAGAAACTTCTGGAGATGAATCAGTACTTACCACCTACAGGACCAACAATAACAATGTTTCTTCCATGTCTGGAGAAGATCAAAATGAGAAGACGAGCGTGATGCCATTCATTGATTTCCTTGGAGTAGGCTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

299

Amino Acids

33.51

Weight (kDa)

8.91

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 40 - 86 4.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 43 - 103 1.2e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 92 - 134 1.8e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 95 - 138 1.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 353
AciI CCGC 1 cut(s) 90
AclI AACGTT 1 cut(s) 438
AclWI GGATC 3 cut(s) 254, 275, 725
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 2 cut(s) 607, 783
AfiI CCNNNNNNNGG 1 cut(s) 795
AflIII ACRYGT 1 cut(s) 602
AgsI TTSAA 4 cut(s) 286, 546, 658, 753
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 4 cut(s) 109, 137, 256, 651
AluI AGCT 4 cut(s) 109, 137, 256, 651
Alw21I GWGCWC 2 cut(s) 32, 89
AlwI GGATC 3 cut(s) 254, 275, 725
AlwNI CAGNNNCTG 1 cut(s) 593
AoxI GGCC 3 cut(s) 121, 131, 342
ApeKI GCWGC 2 cut(s) 92, 587
AspS9I GGNCC 3 cut(s) 176, 342, 798
AvaII GGWCC 2 cut(s) 176, 798
BbsI GAAGAC 2 cut(s) 147, 854
Bbv12I GWGCWC 2 cut(s) 32, 89
BbvI GCAGC 2 cut(s) 79, 599
BccI CCATC 2 cut(s) 206, 506
BcgI CGANNNNNNTGC 2 cut(s) 841, 875
BciT130I CCWGG 1 cut(s) 366
BclI TGATCA 2 cut(s) 64, 496
BfaI CTAG 3 cut(s) 257, 414, 465
BfmI CTRYAG 1 cut(s) 793
BisI GCNGC 2 cut(s) 93, 588
BlpI GCTNAGC 2 cut(s) 201, 583
BlsI GCNGC 2 cut(s) 94, 589
BmcAI AGTACT 1 cut(s) 783
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 2 cut(s) 176, 798
BmgT120I GGNCC 3 cut(s) 176, 342, 798
BmrFI CCNGG 1 cut(s) 366
BmrI ACTGGG 1 cut(s) 163
BmsI GCATC 2 cut(s) 214, 849
BmuI ACTGGG 1 cut(s) 163
BpiI GAAGAC 2 cut(s) 147, 854
BpmI CTGGAG 2 cut(s) 789, 849
Bpu1102I GCTNAGC 2 cut(s) 201, 583
BsaBI GATNNNNATC 1 cut(s) 554
BsaJI CCNNGG 3 cut(s) 263, 364, 877
Bsc4I CCNNNNNNNGG 1 cut(s) 795
Bse1I ACTGG 3 cut(s) 169, 191, 564
Bse3DI GCAATG 1 cut(s) 733
Bse8I GATNNNNATC 1 cut(s) 554
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 3 cut(s) 263, 364, 877
BseJI GATNNNNATC 1 cut(s) 554
BseLI CCNNNNNNNGG 1 cut(s) 795
BseMI GCAATG 1 cut(s) 733
BseMII CTCAG 5 cut(s) 192, 230, 485, 597, 771
BseNI ACTGG 3 cut(s) 169, 191, 564
BseRI GAGGAG 1 cut(s) 451
BseXI GCAGC 2 cut(s) 79, 599
BseYI CCCAGC 1 cut(s) 647
Bsh1236I CGCG 1 cut(s) 353
BshFI GGCC 3 cut(s) 123, 133, 344
BsiHKAI GWGCWC 2 cut(s) 32, 89
BslFI GGGAC 1 cut(s) 529
BslI CCNNNNNNNGG 1 cut(s) 795
BsmFI GGGAC 1 cut(s) 529
BsnI GGCC 3 cut(s) 123, 133, 344
Bsp1286I GDGCHC 2 cut(s) 32, 89
Bsp1720I GCTNAGC 2 cut(s) 201, 583
Bsp68I TCGCGA 1 cut(s) 353
BspACI CCGC 1 cut(s) 90
BspANI GGCC 3 cut(s) 123, 133, 344
BspCNI CTCAG 5 cut(s) 193, 231, 484, 596, 770
BspFNI CGCG 1 cut(s) 353
BspHI TCATGA 4 cut(s) 16, 67, 493, 499
BspPI GGATC 3 cut(s) 254, 275, 725
BsrDI GCAATG 1 cut(s) 733
BsrI ACTGG 3 cut(s) 169, 191, 564
BssECI CCNNGG 3 cut(s) 263, 364, 877
BssT1I CCWWGG 2 cut(s) 263, 877
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 737
Bst6I CTCTTC 1 cut(s) 294
BstAPI GCANNNNNTGC 1 cut(s) 593
BstC8I GCNNGC 2 cut(s) 97, 135
BstDEI CTNAG 7 cut(s) 105, 201, 239, 471, 519, 583, 757
BstFNI CGCG 1 cut(s) 353
BstMWI GCNNNNNNNGC 3 cut(s) 350, 427, 593
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 2 cut(s) 404, 606
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 793
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 2 cut(s) 79, 599
BstV2I GAAGAC 2 cut(s) 147, 854
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 3 cut(s) 123, 133, 344
BtuMI TCGCGA 1 cut(s) 353
Cac8I GCNNGC 2 cut(s) 97, 135
CaiI CAGNNNCTG 1 cut(s) 593
CciI TCATGA 4 cut(s) 16, 67, 493, 499
Cfr13I GGNCC 3 cut(s) 176, 342, 798
Csp6I GTAC 2 cut(s) 606, 782
CviAII CATG 9 cut(s) 17, 34, 68, 346, 401, 494, 500, 603, 823
CviQI GTAC 2 cut(s) 606, 782
DdeI CTNAG 7 cut(s) 105, 201, 239, 471, 519, 583, 757
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco130I CCWWGG 2 cut(s) 263, 877
Eco47I GGWCC 2 cut(s) 176, 798
Eco57I CTGAAG 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 364
EcoT14I CCWWGG 2 cut(s) 263, 877
ErhI CCWWGG 2 cut(s) 263, 877
FaeI CATG 9 cut(s) 20, 37, 71, 349, 404, 497, 503, 606, 826
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 529
FatI CATG 9 cut(s) 16, 33, 67, 345, 400, 493, 499, 602, 822
FbaI TGATCA 2 cut(s) 64, 496
Fnu4HI GCNGC 2 cut(s) 93, 588
Fsp4HI GCNGC 2 cut(s) 93, 588
FspBI CTAG 3 cut(s) 257, 414, 465
GluI GCNGC 2 cut(s) 93, 588
GsaI CCCAGC 1 cut(s) 651
GsuI CTGGAG 2 cut(s) 789, 849
HaeIII GGCC 3 cut(s) 123, 133, 344
Hin1II CATG 9 cut(s) 20, 37, 71, 349, 404, 497, 503, 606, 826
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 5 cut(s) 43, 59, 143, 575, 776
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 3 cut(s) 42, 64, 760
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 2 cut(s) 270, 363
HpyCH4III ACNGT 1 cut(s) 737
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 1 cut(s) 234
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 427, 593
HpyF3I CTNAG 7 cut(s) 105, 201, 239, 471, 519, 583, 757
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 9 cut(s) 20, 37, 71, 349, 404, 497, 503, 606, 826
Ksp22I TGATCA 2 cut(s) 64, 496
Lsp1109I GCAGC 2 cut(s) 79, 599
LweI GCATC 2 cut(s) 214, 849
MaeI CTAG 3 cut(s) 257, 414, 465
MaeII ACGT 1 cut(s) 438
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 2 cut(s) 32, 89
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 2 cut(s) 31, 459
MseI TTAA 2 cut(s) 249, 895
MslI CAYNNNNRTG 4 cut(s) 72, 210, 399, 498
MspA1I CMGCKG 2 cut(s) 92, 137
MspR9I CCNGG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 3 cut(s) 350, 427, 593
NlaIII CATG 9 cut(s) 20, 37, 71, 349, 404, 497, 503, 606, 826
NruI TCGCGA 1 cut(s) 353
NspI RCATGY 2 cut(s) 404, 606
PagI TCATGA 4 cut(s) 16, 67, 493, 499
PciI ACATGT 1 cut(s) 602
PfeI GAWTC 4 cut(s) 43, 59, 575, 776
PkrI GCNGC 2 cut(s) 94, 589
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PscI ACATGT 1 cut(s) 602
Psp1406I AACGTT 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 364
PspFI CCCAGC 1 cut(s) 647
PspGI CCWGG 1 cut(s) 364
PspPI GGNCC 3 cut(s) 176, 342, 798
PstNI CAGNNNCTG 1 cut(s) 593
PsuI RGATCY 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 137
RruI TCGCGA 1 cut(s) 353
RsaI GTAC 2 cut(s) 607, 783
RsaNI GTAC 2 cut(s) 606, 782
RseI CAYNNNNRTG 4 cut(s) 72, 210, 399, 498
SaqAI TTAA 2 cut(s) 249, 895
SatI GCNGC 2 cut(s) 93, 588
Sau96I GGNCC 3 cut(s) 176, 342, 798
ScaI AGTACT 1 cut(s) 783
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 2 cut(s) 32, 89
SetI ASST 7 cut(s) 111, 139, 245, 258, 441, 653, 794
SfaNI GCATC 2 cut(s) 214, 849
SfcI CTRYAG 1 cut(s) 793
SinI GGWCC 2 cut(s) 176, 798
SmiMI CAYNNNNRTG 4 cut(s) 72, 210, 399, 498
SsiI CCGC 1 cut(s) 90
SspMI CTAG 3 cut(s) 257, 414, 465
StyD4I CCNGG 1 cut(s) 364
StyI CCWWGG 2 cut(s) 263, 877
TaaI ACNGT 1 cut(s) 737
TaiI ACGT 1 cut(s) 441
TatI WGTACW 2 cut(s) 605, 781
TfiI GAWTC 4 cut(s) 43, 59, 575, 776
Tru1I TTAA 2 cut(s) 249, 895
Tru9I TTAA 2 cut(s) 249, 895
TseI GCWGC 2 cut(s) 92, 587
TspDTI ATGAA 8 cut(s) 5, 72, 519, 588, 719, 732, 789, 856
VpaK11BI GGWCC 2 cut(s) 176, 798
XceI RCATGY 2 cut(s) 404, 606
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XspI CTAG 3 cut(s) 257, 414, 465
ZrmI AGTACT 1 cut(s) 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.