pumilio homolog
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g30780 FvH4_5g30780 |
| malus_domestica | MD05G1093500.v1.1 |
| prunus_persica | Prupe.8G138200_v2.0.a1 Prupe.8G138200_v2.0.a1 |
| pyrus_communis | pycom15g06920 |
| rosa_chinensis | RchiOBHm_Chr6g0254321 RchiOBHm_Chr6g0254351 |
| rosa_laevigata | RLG00000014133 RLG00000014918 RLG00000014919 RLG00000014923 RLG00000014926 |
| rosa_multiflora | Rmu_sc0006565.1_g000002 Rmu_sc0007138.1_g000009 Rmu_sc0027609.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00210870 Rroxscaffold_7G00210910 Rroxscaffold_7G00210930 |
| rosa_rugosa | Rorug05G0552000 |
| rosa_samantha | Rh6AG068500 Rh6AG068800 Rh6AG068900 Rh6BG061200 Rh6CG061000 Rh6CG061100 Rh6CG061500 Rh6DG058000 Rh6DG058300 Rh6DG058400 Rh6DG058700 |
| rosa_wichuraiana | Rw6G006000 Rw6G006040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 929 |
| AciI | CCGC | 3 cut(s) | 425, 805, 1343 |
| AclI | AACGTT | 1 cut(s) | 856 |
| AclWI | GGATC | 7 cut(s) | 435, 778, 832, 1104, 1198, 1790, 1852 |
| AcoI | YGGCCR | 1 cut(s) | 999 |
| AcsI | RAATTY | 4 cut(s) | 646, 1142, 1393, 1577 |
| AcuI | CTGAAG | 3 cut(s) | 553, 1346, 1637 |
| AfaI | GTAC | 2 cut(s) | 310, 522 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 696, 1720 |
| AflIII | ACRYGT | 1 cut(s) | 1600 |
| AjnI | CCWGG | 1 cut(s) | 1360 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 881, 913 |
| AluBI | AGCT | 5 cut(s) | 58, 458, 543, 1117, 1651 |
| AluI | AGCT | 5 cut(s) | 58, 458, 543, 1117, 1651 |
| Alw21I | GWGCWC | 2 cut(s) | 1241, 1926 |
| Alw44I | GTGCAC | 1 cut(s) | 1237 |
| AlwI | GGATC | 7 cut(s) | 435, 778, 832, 1104, 1198, 1790, 1852 |
| Ama87I | CYCGRG | 2 cut(s) | 1293, 1557 |
| AoxI | GGCC | 3 cut(s) | 877, 883, 999 |
| ApaLI | GTGCAC | 1 cut(s) | 1237 |
| ApeKI | GCWGC | 4 cut(s) | 455, 717, 937, 1357 |
| ApoI | RAATTY | 4 cut(s) | 646, 1142, 1393, 1577 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1562, 1594 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1146, 1394 |
| AspLEI | GCGC | 1 cut(s) | 1453 |
| AspS9I | GGNCC | 1 cut(s) | 877 |
| AsuHPI | GGTGA | 3 cut(s) | 104, 575, 764 |
| AsuNHI | GCTAGC | 1 cut(s) | 1453 |
| AvaI | CYCGRG | 2 cut(s) | 1293, 1557 |
| BaeGI | GKGCMC | 1 cut(s) | 1241 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 292, 325 |
| BalI | TGGCCA | 1 cut(s) | 1001 |
| BauI | CACGAG | 1 cut(s) | 1623 |
| BbsI | GAAGAC | 3 cut(s) | 38, 856, 1523 |
| Bbv12I | GWGCWC | 2 cut(s) | 1241, 1926 |
| BbvI | GCAGC | 4 cut(s) | 467, 729, 949, 1369 |
| BccI | CCATC | 5 cut(s) | 33, 156, 264, 619, 1911 |
| BciT130I | CCWGG | 1 cut(s) | 1362 |
| BciVI | GTATCC | 1 cut(s) | 1846 |
| BclI | TGATCA | 5 cut(s) | 280, 445, 754, 1102, 1243 |
| BfaI | CTAG | 5 cut(s) | 540, 578, 789, 1436, 1454 |
| BfmI | CTRYAG | 1 cut(s) | 596 |
| BfuI | GTATCC | 1 cut(s) | 1846 |
| BisI | GCNGC | 4 cut(s) | 456, 718, 938, 1358 |
| BlpI | GCTNAGC | 3 cut(s) | 473, 630, 1346 |
| BlsI | GCNGC | 4 cut(s) | 457, 719, 939, 1359 |
| Bme1390I | CCNGG | 1 cut(s) | 1362 |
| BmeT110I | CYCGRG | 2 cut(s) | 1293, 1557 |
| BmgT120I | GGNCC | 1 cut(s) | 877 |
| BmiI | GGNNCC | 4 cut(s) | 82, 701, 707, 878 |
| BmrFI | CCNGG | 1 cut(s) | 1362 |
| BmrI | ACTGGG | 1 cut(s) | 849 |
| BmsI | GCATC | 1 cut(s) | 448 |
| BmtI | GCTAGC | 1 cut(s) | 1457 |
| BmuI | ACTGGG | 1 cut(s) | 849 |
| BpiI | GAAGAC | 3 cut(s) | 38, 856, 1523 |
| BpmI | CTGGAG | 2 cut(s) | 99, 1298 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 473, 630, 1346 |
| Bsa29I | ATCGAT | 1 cut(s) | 1676 |
| BsaAI | YACGTR | 1 cut(s) | 1603 |
| BsaBI | GATNNNNATC | 2 cut(s) | 769, 1101 |
| BsaJI | CCNNGG | 4 cut(s) | 381, 880, 1413, 1839 |
| BsaWI | WCCGGW | 3 cut(s) | 88, 702, 708 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 721, 751 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 696, 1720 |
| Bse1I | ACTGG | 2 cut(s) | 82, 844 |
| Bse3DI | GCAATG | 2 cut(s) | 565, 928 |
| Bse8I | GATNNNNATC | 2 cut(s) | 769, 1101 |
| BseBI | CCWGG | 1 cut(s) | 1362 |
| BseCI | ATCGAT | 1 cut(s) | 1676 |
| BseDI | CCNNGG | 4 cut(s) | 381, 880, 1413, 1839 |
| BseGI | GGATG | 5 cut(s) | 44, 148, 169, 506, 1022 |
| BseJI | GATNNNNATC | 2 cut(s) | 769, 1101 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 696, 1720 |
| BseMI | GCAATG | 2 cut(s) | 565, 928 |
| BseMII | CTCAG | 8 cut(s) | 464, 644, 815, 1199, 1337, 1539, 1764, 1832 |
| BseNI | ACTGG | 2 cut(s) | 82, 844 |
| BseRI | GAGGAG | 1 cut(s) | 278 |
| BseSI | GKGCMC | 1 cut(s) | 1241 |
| BseXI | GCAGC | 4 cut(s) | 467, 729, 949, 1369 |
| BsgI | GTGCAG | 2 cut(s) | 1393, 1880 |
| BshFI | GGCC | 3 cut(s) | 879, 885, 1001 |
| BshVI | ATCGAT | 1 cut(s) | 1676 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1241, 1926 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1293, 1557 |
| BsiSI | CCGG | 3 cut(s) | 89, 703, 709 |
| BslFI | GGGAC | 5 cut(s) | 485, 947, 996, 1150, 1180 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 696, 1720 |
| BsmFI | GGGAC | 5 cut(s) | 485, 947, 996, 1150, 1180 |
| BsnI | GGCC | 3 cut(s) | 879, 885, 1001 |
| BsoBI | CYCGRG | 2 cut(s) | 1293, 1557 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1241, 1926 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 473, 630, 1346 |
| BspACI | CCGC | 3 cut(s) | 425, 805, 1343 |
| BspANI | GGCC | 3 cut(s) | 879, 885, 1001 |
| BspCNI | CTCAG | 8 cut(s) | 465, 643, 814, 1200, 1338, 1540, 1765, 1831 |
| BspDI | ATCGAT | 1 cut(s) | 1676 |
| BspHI | TCATGA | 3 cut(s) | 412, 442, 1099 |
| BspLI | GGNNCC | 4 cut(s) | 82, 701, 707, 878 |
| BspMAI | CTGCAG | 1 cut(s) | 600 |
| BspOI | GCTAGC | 1 cut(s) | 1457 |
| BspPI | GGATC | 7 cut(s) | 435, 778, 832, 1104, 1198, 1790, 1852 |
| BspQI | GCTCTTC | 1 cut(s) | 1833 |
| BsrDI | GCAATG | 2 cut(s) | 565, 928 |
| BsrI | ACTGG | 2 cut(s) | 82, 844 |
| BssECI | CCNNGG | 4 cut(s) | 381, 880, 1413, 1839 |
| BssSI | CACGAG | 1 cut(s) | 1623 |
| BssT1I | CCWWGG | 4 cut(s) | 381, 880, 1413, 1839 |
| Bst2BI | CACGAG | 1 cut(s) | 1623 |
| Bst2UI | CCWGG | 1 cut(s) | 1362 |
| Bst4CI | ACNGT | 6 cut(s) | 104, 116, 308, 362, 1305, 1943 |
| Bst6I | CTCTTC | 6 cut(s) | 5, 171, 864, 966, 1053, 1833 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1273 |
| BstBAI | YACGTR | 1 cut(s) | 1603 |
| BstC8I | GCNNGC | 3 cut(s) | 1115, 1455, 1554 |
| BstDEI | CTNAG | 9 cut(s) | 473, 630, 801, 1208, 1346, 1521, 1548, 1773, 1818 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1718 |
| BstF5I | GGATG | 5 cut(s) | 44, 148, 169, 506, 1022 |
| BstHHI | GCGC | 1 cut(s) | 1453 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 842, 1273, 1823 |
| BstNI | CCWGG | 1 cut(s) | 1362 |
| BstNSI | RCATGY | 1 cut(s) | 1556 |
| BstSCI | CCNGG | 1 cut(s) | 1360 |
| BstSFI | CTRYAG | 1 cut(s) | 596 |
| BstSLI | GKGCMC | 1 cut(s) | 1241 |
| BstV1I | GCAGC | 4 cut(s) | 467, 729, 949, 1369 |
| BstV2I | GAAGAC | 3 cut(s) | 38, 856, 1523 |
| BstX2I | RGATCY | 3 cut(s) | 770, 1795, 1844 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1910 |
| BstYI | RGATCY | 3 cut(s) | 770, 1795, 1844 |
| Bsu15I | ATCGAT | 1 cut(s) | 1676 |
| BsuI | GTATCC | 1 cut(s) | 1846 |
| BsuRI | GGCC | 3 cut(s) | 879, 885, 1001 |
| BsuTUI | ATCGAT | 1 cut(s) | 1676 |
| BtsCI | GGATG | 5 cut(s) | 44, 148, 169, 506, 1022 |
| BtsIMutI | CAGTG | 2 cut(s) | 71, 1239 |
| Cac8I | GCNNGC | 3 cut(s) | 1115, 1455, 1554 |
| CciI | TCATGA | 3 cut(s) | 412, 442, 1099 |
| CfoI | GCGC | 1 cut(s) | 1453 |
| Cfr13I | GGNCC | 1 cut(s) | 877 |
| ClaI | ATCGAT | 1 cut(s) | 1676 |
| CseI | GACGC | 1 cut(s) | 1517 |
| Csp6I | GTAC | 2 cut(s) | 309, 521 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 219, 254 |
| CviQI | GTAC | 2 cut(s) | 309, 521 |
| DdeI | CTNAG | 9 cut(s) | 473, 630, 801, 1208, 1346, 1521, 1548, 1773, 1818 |
| EaeI | YGGCCR | 1 cut(s) | 999 |
| Eam1104I | CTCTTC | 6 cut(s) | 5, 171, 864, 966, 1053, 1833 |
| EarI | CTCTTC | 6 cut(s) | 5, 171, 864, 966, 1053, 1833 |
| Eco130I | CCWWGG | 4 cut(s) | 381, 880, 1413, 1839 |
| Eco147I | AGGCCT | 1 cut(s) | 885 |
| Eco57I | CTGAAG | 3 cut(s) | 553, 1346, 1637 |
| Eco88I | CYCGRG | 2 cut(s) | 1293, 1557 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1718 |
| EcoRI | GAATTC | 1 cut(s) | 646 |
| EcoRII | CCWGG | 1 cut(s) | 1360 |
| EcoT14I | CCWWGG | 4 cut(s) | 381, 880, 1413, 1839 |
| EcoT22I | ATGCAT | 1 cut(s) | 441 |
| ErhI | CCWWGG | 4 cut(s) | 381, 880, 1413, 1839 |
| FaqI | GGGAC | 5 cut(s) | 485, 947, 996, 1150, 1180 |
| FauNDI | CATATG | 2 cut(s) | 186, 1801 |
| FbaI | TGATCA | 5 cut(s) | 280, 445, 754, 1102, 1243 |
| FblI | GTMKAC | 1 cut(s) | 929 |
| Fnu4HI | GCNGC | 4 cut(s) | 456, 718, 938, 1358 |
| FokI | GGATG | 5 cut(s) | 51, 135, 156, 493, 1029 |
| Fsp4HI | GCNGC | 4 cut(s) | 456, 718, 938, 1358 |
| FspBI | CTAG | 5 cut(s) | 540, 578, 789, 1436, 1454 |
| GlaI | GCGC | 1 cut(s) | 1452 |
| GluI | GCNGC | 4 cut(s) | 456, 718, 938, 1358 |
| GsuI | CTGGAG | 2 cut(s) | 99, 1298 |
| HaeIII | GGCC | 3 cut(s) | 879, 885, 1001 |
| HapII | CCGG | 3 cut(s) | 89, 703, 709 |
| HgaI | GACGC | 1 cut(s) | 1517 |
| HhaI | GCGC | 1 cut(s) | 1453 |
| Hin6I | GCGC | 1 cut(s) | 1451 |
| HinP1I | GCGC | 1 cut(s) | 1451 |
| HinfI | GANTC | 6 cut(s) | 109, 122, 196, 1332, 1375, 1560 |
| HpaII | CCGG | 3 cut(s) | 89, 703, 709 |
| HphI | GGTGA | 3 cut(s) | 104, 575, 764 |
| Hpy166II | GTNNAC | 5 cut(s) | 900, 930, 1239, 1852, 1867 |
| Hpy8I | GTNNAC | 5 cut(s) | 900, 930, 1239, 1852, 1867 |
| Hpy99I | CGWCG | 1 cut(s) | 1574 |
| HpyAV | CCTTC | 3 cut(s) | 1048, 1157, 1172 |
| HpyCH4III | ACNGT | 6 cut(s) | 104, 116, 308, 362, 1305, 1943 |
| HpyCH4IV | ACGT | 2 cut(s) | 856, 1602 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 842, 1273, 1823 |
| HpyF3I | CTNAG | 9 cut(s) | 473, 630, 801, 1208, 1346, 1521, 1548, 1773, 1818 |
| HpySE526I | ACGT | 2 cut(s) | 856, 1602 |
| HspAI | GCGC | 1 cut(s) | 1451 |
| Ksp22I | TGATCA | 5 cut(s) | 280, 445, 754, 1102, 1243 |
| LguI | GCTCTTC | 1 cut(s) | 1833 |
| LmnI | GCTCC | 3 cut(s) | 80, 1525, 1878 |
| Lsp1109I | GCAGC | 4 cut(s) | 467, 729, 949, 1369 |
| LweI | GCATC | 1 cut(s) | 448 |
| MaeI | CTAG | 5 cut(s) | 540, 578, 789, 1436, 1454 |
| MaeII | ACGT | 2 cut(s) | 856, 1602 |
| MaeIII | GTNAC | 2 cut(s) | 563, 1627 |
| MfeI | CAATTG | 1 cut(s) | 549 |
| MflI | RGATCY | 3 cut(s) | 770, 1795, 1844 |
| MhlI | GDGCHC | 2 cut(s) | 1241, 1926 |
| MlsI | TGGCCA | 1 cut(s) | 1001 |
| MluNI | TGGCCA | 1 cut(s) | 1001 |
| MlyI | GAGTC | 1 cut(s) | 1569 |
| MmeI | TCCRAC | 2 cut(s) | 677, 1593 |
| Mox20I | TGGCCA | 1 cut(s) | 1001 |
| Mph1103I | ATGCAT | 1 cut(s) | 441 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1146, 1394 |
| MscI | TGGCCA | 1 cut(s) | 1001 |
| MseI | TTAA | 6 cut(s) | 72, 357, 605, 1077, 1668, 1957 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1908 |
| Msp20I | TGGCCA | 1 cut(s) | 1001 |
| MspA1I | CMGCKG | 2 cut(s) | 805, 1345 |
| MspI | CCGG | 3 cut(s) | 89, 703, 709 |
| MspR9I | CCNGG | 1 cut(s) | 1362 |
| MunI | CAATTG | 1 cut(s) | 549 |
| MvaI | CCWGG | 1 cut(s) | 1362 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 842, 1273, 1823 |
| NdeI | CATATG | 2 cut(s) | 186, 1801 |
| NheI | GCTAGC | 1 cut(s) | 1453 |
| NlaIV | GGNNCC | 4 cut(s) | 82, 701, 707, 878 |
| NmeAIII | GCCGAG | 2 cut(s) | 913, 1283 |
| NmuCI | GTSAC | 1 cut(s) | 563 |
| NsiI | ATGCAT | 1 cut(s) | 441 |
| NspI | RCATGY | 1 cut(s) | 1556 |
| PaeI | GCATGC | 1 cut(s) | 1556 |
| PaeR7I | CTCGAG | 2 cut(s) | 1293, 1557 |
| PagI | TCATGA | 3 cut(s) | 412, 442, 1099 |
| PceI | AGGCCT | 1 cut(s) | 885 |
| PciSI | GCTCTTC | 1 cut(s) | 1833 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1146, 1394 |
| PfeI | GAWTC | 5 cut(s) | 109, 122, 196, 1332, 1375 |
| PkrI | GCNGC | 4 cut(s) | 457, 719, 939, 1359 |
| PleI | GAGTC | 1 cut(s) | 1568 |
| PpsI | GAGTC | 1 cut(s) | 1568 |
| Ppu21I | YACGTR | 1 cut(s) | 1603 |
| Psp1406I | AACGTT | 1 cut(s) | 856 |
| Psp6I | CCWGG | 1 cut(s) | 1360 |
| PspGI | CCWGG | 1 cut(s) | 1360 |
| PspN4I | GGNNCC | 4 cut(s) | 82, 701, 707, 878 |
| PspPI | GGNCC | 1 cut(s) | 877 |
| PspXI | VCTCGAGB | 1 cut(s) | 1557 |
| PstI | CTGCAG | 1 cut(s) | 600 |
| PsuI | RGATCY | 3 cut(s) | 770, 1795, 1844 |
| RsaI | GTAC | 2 cut(s) | 310, 522 |
| RsaNI | GTAC | 2 cut(s) | 309, 521 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1908 |
| SapI | GCTCTTC | 1 cut(s) | 1833 |
| SaqAI | TTAA | 6 cut(s) | 72, 357, 605, 1077, 1668, 1957 |
| SatI | GCNGC | 4 cut(s) | 456, 718, 938, 1358 |
| Sau96I | GGNCC | 1 cut(s) | 877 |
| SchI | GAGTC | 1 cut(s) | 1569 |
| ScrFI | CCNGG | 1 cut(s) | 1362 |
| SduI | GDGCHC | 2 cut(s) | 1241, 1926 |
| SfaNI | GCATC | 1 cut(s) | 448 |
| SfcI | CTRYAG | 1 cut(s) | 596 |
| Sfr274I | CTCGAG | 2 cut(s) | 1293, 1557 |
| SlaI | CTCGAG | 2 cut(s) | 1293, 1557 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1908 |
| SmlI | CTYRAG | 2 cut(s) | 1293, 1557 |
| SmoI | CTYRAG | 2 cut(s) | 1293, 1557 |
| SphI | GCATGC | 1 cut(s) | 1556 |
| SseBI | AGGCCT | 1 cut(s) | 885 |
| SsiI | CCGC | 3 cut(s) | 425, 805, 1343 |
| SspI | AATATT | 1 cut(s) | 590 |
| SspMI | CTAG | 5 cut(s) | 540, 578, 789, 1436, 1454 |
| StuI | AGGCCT | 1 cut(s) | 885 |
| StyD4I | CCNGG | 1 cut(s) | 1360 |
| StyI | CCWWGG | 4 cut(s) | 381, 880, 1413, 1839 |
| TaaI | ACNGT | 6 cut(s) | 104, 116, 308, 362, 1305, 1943 |
| TaiI | ACGT | 2 cut(s) | 859, 1605 |
| TaqI | TCGA | 8 cut(s) | 120, 344, 377, 743, 1294, 1558, 1676, 1926 |
| TfiI | GAWTC | 5 cut(s) | 109, 122, 196, 1332, 1375 |
| Tru1I | TTAA | 6 cut(s) | 72, 357, 605, 1077, 1668, 1957 |
| Tru9I | TTAA | 6 cut(s) | 72, 357, 605, 1077, 1668, 1957 |
| TscAI | CASTG | 2 cut(s) | 71, 1246 |
| TseFI | GTSAC | 1 cut(s) | 563 |
| TseI | GCWGC | 4 cut(s) | 455, 717, 937, 1357 |
| Tsp45I | GTSAC | 1 cut(s) | 563 |
| TspDTI | ATGAA | 7 cut(s) | 50, 158, 1095, 1103, 1590, 1694, 1778 |
| TspGWI | ACGGA | 1 cut(s) | 1198 |
| TspRI | CASTG | 2 cut(s) | 71, 1246 |
| VneI | GTGCAC | 1 cut(s) | 1237 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1718 |
| XapI | RAATTY | 4 cut(s) | 646, 1142, 1393, 1577 |
| XbaI | TCTAGA | 1 cut(s) | 577 |
| XceI | RCATGY | 1 cut(s) | 1556 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1420 |
| XhoI | CTCGAG | 2 cut(s) | 1293, 1557 |
| XmiI | GTMKAC | 1 cut(s) | 929 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1146, 1394 |
| XspI | CTAG | 5 cut(s) | 540, 578, 789, 1436, 1454 |
| Zsp2I | ATGCAT | 1 cut(s) | 441 |