RLG00000014926

pumilio homolog

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
59512681 .. 59517324
4644 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014926

Sequence Viewer

Length: 1746 bp
ATGTATTCGGATCCCATGTTGCCCAATCTTGTTCTTCAAAACCCACCAATCATGCAAAACCCTCCATACCATCAAAACACTAATCCCAACTTTGATCATCTTCTTCTTCCCGGAAACAGTATCAACAATCTTATCAACAACAATAAGAATGGGTTTTCGACAGTGGGATTTAACAATAACAATGGGTTTTCGACATTGGGATTTGGAACAGGTAGGGGAGGTCCTCATGACTTTGCTGCTGATCAGACTCATAATCAACTCACAGCTTCTTTGAATCGGCTGAGCATATCTAATAATGGCAGTTCGGGCAATCAAAGAATACCCAACAACTATATGCCTAGCTCTACAATACTAGGCAATGGTGGGTTCAGTACTCTAGAGCAGGAATATTTGGAGAGGTTGAACCAATATGTTTTCTTAGTGGCTGAGCAGTACATGAGGGGTTCGAATCCCACTACTGCTAACAGTGGAATACTCAATCCCCATAGTTGGAATCGGAATAGCACTAGTAGTAGTAGGAGCACTAGTCAATCGATTTATGGGGATCAATTTGGATTTGGTTTTAACCAAATTAGGTCTAGTTCTAGTTCTCAGCGAAATGGGGTTAGCAGGAGATCAAGGTTTGCTAACGGGGCTGGAAGACAGCGTTTCAGGCAAGAAGAAAGGAGCCAAGGCCTGAATTTGATGTCCACCAAAGATCAAAGGCTTGGCAATGGGTCTGCACGGCGGCATATACCAAGTTATTACTCTGTCCCTTTAGAAGAGTTGAGGGGCCAAATTACTTTTGTGGCCAAAGATCATGTTGGATGTCGATTTTTACAAAAGAAGATTGAGGAGGGTAAGATGGAAGAGATTGAAATGATTTTTAATGAGGTTATGAAAGAGGGTCATGATCATTTGCGCGAGCTAATGGTAAATCAATTTGGGACTGAATTTATTCAGAAACTTGTGGAGGGGACTAACAGGGACGGATGGACCAAAATGCTTGATTTGGTGATGAGTGATGAGAGGAAACTCAAGGATATATGCACTGACCAGCATGGAAGTCGTGCCATGCAGAAGTTGCTGGAGCGGGTTGAAACCCGAGAGCAACAGTCCTCGTTTATGCGGGTTCTGAAGCGAATCACAATACCGCTGAGCAAAACCCAGCCTGGTTATTATGTGATTCAAGTTTGCTTGAAAAATTTCTCTCCTGACTGCACCAAGGGTGTTCTGGAATTAGTGCTAGATAACTGCCTTGCATTAGCAAAAGACAAATTTGGGTGTTGCTTAGTGCAAAGCAGTGTGCATTATGCGTATACTGAAGCTAAGGAGCGTCTTGTGGCTGACATAACTGAGCATGCTCGAGTCCTCTCTGAAGATCCTTACGGGAACTATGTTGTGCAGTACATAATTGGACTAAAAATACCTTCTGTAACAGCAGACATTTTAGGTCAGCTTCAGGGGTATTTTGTTAATCTGTCAATGAACAAGCATGGAAGTAATGTAGTCGAGAAAACCCTGAAAGAGGCTGGAGAAGAACATGCCAATATGATTATTAACGAGATGATTAATAGTCCTGAGTTTCTGAATGTTCTTCAAAATCCTTATGGGAATTATGTTGCTCAGTCTGCTCTTGCAGTATCCAAGGGATCTGTTCACAATGCTCTTGTTAACCTCATTCGGAGCAATTACCCTCATCTGCACAGCCATCTGTATGGGAAAAGGGTGCTCGACAAAACCAGAGGAGGCAGGCATCGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

582

Amino Acids

65.31

Weight (kDa)

9.02

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUF PF00806 263 - 293 1.1e-07 Pumilio-family RNA binding repeat
PUF PF00806 411 - 444 4.1e-06 Pumilio-family RNA binding repeat
PUF PF00806 483 - 517 5.8e-08 Pumilio-family RNA binding repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1072
AccI GTMKAC 1 cut(s) 1298
AccII CGCG 1 cut(s) 903
AciI CCGC 4 cut(s) 727, 1072, 1108, 1133
AclWI GGATC 5 cut(s) 5, 18, 552, 1355, 1639
AcoI YGGCCR 1 cut(s) 789
AcsI RAATTY 4 cut(s) 679, 932, 1183, 1256
AcuI CTGAAG 4 cut(s) 1136, 1323, 1377, 1424
AfaI GTAC 3 cut(s) 373, 434, 1388
AfiI CCNNNNNNNGG 2 cut(s) 489, 1507
AgsI TTSAA 8 cut(s) 38, 274, 403, 857, 1079, 1169, 1180, 1580
AhlI ACTAGT 2 cut(s) 506, 524
AjnI CCWGG 1 cut(s) 1150
AluBI AGCT 5 cut(s) 266, 342, 907, 1307, 1438
AluI AGCT 5 cut(s) 266, 342, 907, 1307, 1438
Alw21I GWGCWC 2 cut(s) 524, 1713
AlwI GGATC 5 cut(s) 5, 18, 552, 1355, 1639
Ama87I CYCGRG 2 cut(s) 1083, 1344
AoxI GGCC 3 cut(s) 673, 772, 789
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 4 cut(s) 679, 932, 1183, 1256
AseI ATTAAT 1 cut(s) 1551
Asp700I GAANNNNTTC 2 cut(s) 936, 1184
AspLEI GCGC 1 cut(s) 903
AspS9I GGNCC 3 cut(s) 221, 772, 975
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 1006
AsuII TTCGAA 1 cut(s) 446
AvaI CYCGRG 2 cut(s) 1083, 1344
AvaII GGWCC 2 cut(s) 221, 975
BalI TGGCCA 1 cut(s) 791
BamHI GGATCC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 646
Bbv12I GWGCWC 2 cut(s) 524, 1713
BbvI GCAGC 1 cut(s) 223
BccI CCATC 4 cut(s) 78, 838, 966, 1698
BceAI ACGGC 1 cut(s) 740
BcgI CGANNNNNNTGC 2 cut(s) 1028, 1062
BciT130I CCWGG 1 cut(s) 1152
BciVI GTATCC 1 cut(s) 1633
BclI TGATCA 3 cut(s) 94, 241, 892
BcnI CCSGG 1 cut(s) 111
BcuI ACTAGT 2 cut(s) 506, 524
BfaI CTAG 8 cut(s) 339, 353, 377, 507, 525, 579, 585, 1226
BfuI GTATCC 1 cut(s) 1633
BisI GCNGC 2 cut(s) 237, 728
BlpI GCTNAGC 3 cut(s) 281, 426, 1136
BlsI GCNGC 2 cut(s) 238, 729
BmcAI AGTACT 1 cut(s) 373
Bme1390I CCNGG 2 cut(s) 111, 1152
Bme18I GGWCC 2 cut(s) 221, 975
BmeT110I CYCGRG 2 cut(s) 1083, 1344
BmgT120I GGNCC 3 cut(s) 221, 772, 975
BmiI GGNNCC 3 cut(s) 12, 668, 773
BmrFI CCNGG 2 cut(s) 111, 1152
BpiI GAAGAC 1 cut(s) 646
BpmI CTGGAG 2 cut(s) 1088, 1533
Bpu10I CCTNAGC 1 cut(s) 1308
Bpu1102I GCTNAGC 3 cut(s) 281, 426, 1136
Bpu14I TTCGAA 1 cut(s) 446
BpuEI CTTGAG 1 cut(s) 1001
BpuMI CCSGG 1 cut(s) 111
Bsa29I ATCGAT 1 cut(s) 533
BsaJI CCNNGG 3 cut(s) 670, 1203, 1626
BsaXI ACNNNNNCTCC 2 cut(s) 511, 541
Bsc4I CCNNNNNNNGG 2 cut(s) 489, 1507
Bse3DI GCAATG 2 cut(s) 364, 718
BseBI CCWGG 1 cut(s) 1152
BseCI ATCGAT 1 cut(s) 533
BseDI CCNNGG 3 cut(s) 670, 1203, 1626
BseGI GGATG 2 cut(s) 812, 977
BseLI CCNNNNNNNGG 2 cut(s) 489, 1507
BseMI GCAATG 2 cut(s) 364, 718
BseMII CTCAG 7 cut(s) 272, 417, 605, 1127, 1326, 1551, 1619
BseRI GAGGAG 2 cut(s) 848, 1740
BseXI GCAGC 1 cut(s) 223
BseYI CCCAGC 1 cut(s) 1146
BsgI GTGCAG 4 cut(s) 705, 1183, 1403, 1667
Bsh1236I CGCG 1 cut(s) 903
BshFI GGCC 3 cut(s) 675, 774, 791
BshVI ATCGAT 1 cut(s) 533
BsiHKAI GWGCWC 2 cut(s) 524, 1713
BsiHKCI CYCGRG 2 cut(s) 1083, 1344
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 4 cut(s) 737, 940, 970, 980
BslI CCNNNNNNNGG 2 cut(s) 489, 1507
BsmFI GGGAC 4 cut(s) 737, 940, 970, 980
BsnI GGCC 3 cut(s) 675, 774, 791
BsoBI CYCGRG 2 cut(s) 1083, 1344
Bsp119I TTCGAA 1 cut(s) 446
Bsp1286I GDGCHC 2 cut(s) 524, 1713
Bsp1720I GCTNAGC 3 cut(s) 281, 426, 1136
BspACI CCGC 4 cut(s) 727, 1072, 1108, 1133
BspANI GGCC 3 cut(s) 675, 774, 791
BspCNI CTCAG 7 cut(s) 273, 418, 604, 1128, 1327, 1552, 1618
BspDI ATCGAT 1 cut(s) 533
BspFNI CGCG 1 cut(s) 903
BspHI TCATGA 2 cut(s) 226, 889
BspLI GGNNCC 3 cut(s) 12, 668, 773
BspPI GGATC 5 cut(s) 5, 18, 552, 1355, 1639
BspT104I TTCGAA 1 cut(s) 446
BsrBI CCGCTC 1 cut(s) 1072
BsrDI GCAATG 2 cut(s) 364, 718
BssECI CCNNGG 3 cut(s) 670, 1203, 1626
BssNAI GTATAC 1 cut(s) 1299
BssT1I CCWWGG 3 cut(s) 670, 1203, 1626
Bst1107I GTATAC 1 cut(s) 1299
Bst2UI CCWGG 1 cut(s) 1152
Bst4CI ACNGT 4 cut(s) 119, 163, 467, 1095
Bst6I CTCTTC 2 cut(s) 756, 843
BstAPI GCANNNNNTGC 1 cut(s) 1063
BstBI TTCGAA 1 cut(s) 446
BstC8I GCNNGC 3 cut(s) 905, 1341, 1733
BstENI CCTNNNNNAGG 1 cut(s) 1505
BstF5I GGATG 2 cut(s) 812, 977
BstFNI CGCG 1 cut(s) 903
BstHHI GCGC 1 cut(s) 903
BstMWI GCNNNNNNNGC 5 cut(s) 306, 632, 652, 1063, 1610
BstNI CCWGG 1 cut(s) 1152
BstNSI RCATGY 2 cut(s) 1343, 1526
BstSCI CCNGG 2 cut(s) 109, 1150
BstUI CGCG 1 cut(s) 903
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 646
BstX2I RGATCY 3 cut(s) 10, 1360, 1631
BstXI CCANNNNNNTGG 1 cut(s) 1697
BstYI RGATCY 3 cut(s) 10, 1360, 1631
BstZ17I GTATAC 1 cut(s) 1299
Bsu15I ATCGAT 1 cut(s) 533
BsuI GTATCC 1 cut(s) 1633
BsuRI GGCC 3 cut(s) 675, 774, 791
BsuTUI ATCGAT 1 cut(s) 533
BtsCI GGATG 2 cut(s) 812, 977
BtsI GCAGTG 1 cut(s) 1288
BtsIMutI CAGTG 4 cut(s) 168, 472, 1029, 1288
Cac8I GCNNGC 3 cut(s) 905, 1341, 1733
CciI TCATGA 2 cut(s) 226, 889
CfoI GCGC 1 cut(s) 903
Cfr13I GGNCC 3 cut(s) 221, 772, 975
ClaI ATCGAT 1 cut(s) 533
CseI GACGC 1 cut(s) 1304
Csp6I GTAC 3 cut(s) 372, 433, 1387
CviQI GTAC 3 cut(s) 372, 433, 1387
EaeI YGGCCR 1 cut(s) 789
Eam1104I CTCTTC 2 cut(s) 756, 843
EarI CTCTTC 2 cut(s) 756, 843
Eco130I CCWWGG 3 cut(s) 670, 1203, 1626
Eco147I AGGCCT 1 cut(s) 675
Eco47I GGWCC 2 cut(s) 221, 975
Eco57I CTGAAG 4 cut(s) 1136, 1323, 1377, 1424
Eco88I CYCGRG 2 cut(s) 1083, 1344
EcoNI CCTNNNNNAGG 1 cut(s) 1505
EcoO109I RGGNCCY 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 1150
EcoT14I CCWWGG 3 cut(s) 670, 1203, 1626
ErhI CCWWGG 3 cut(s) 670, 1203, 1626
FaqI GGGAC 4 cut(s) 737, 940, 970, 980
FauI CCCGC 2 cut(s) 1065, 1101
FbaI TGATCA 3 cut(s) 94, 241, 892
FblI GTMKAC 1 cut(s) 1298
Fnu4HI GCNGC 2 cut(s) 237, 728
FokI GGATG 2 cut(s) 819, 984
Fsp4HI GCNGC 2 cut(s) 237, 728
FspBI CTAG 8 cut(s) 339, 353, 377, 507, 525, 579, 585, 1226
GlaI GCGC 1 cut(s) 902
GluI GCNGC 2 cut(s) 237, 728
GsaI CCCAGC 1 cut(s) 1150
GsuI CTGGAG 2 cut(s) 1088, 1533
HaeIII GGCC 3 cut(s) 675, 774, 791
HapII CCGG 1 cut(s) 111
HgaI GACGC 1 cut(s) 1304
HhaI GCGC 1 cut(s) 903
Hin6I GCGC 1 cut(s) 901
HinP1I GCGC 1 cut(s) 901
HincII GTYRAC 1 cut(s) 1654
HindII GTYRAC 1 cut(s) 1654
HinfI GANTC 7 cut(s) 247, 274, 448, 493, 1122, 1165, 1347
HpaI GTTAAC 1 cut(s) 1654
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 1006
Hpy166II GTNNAC 4 cut(s) 690, 1299, 1639, 1654
Hpy188I TCNGA 8 cut(s) 10, 246, 498, 942, 1116, 1357, 1569, 1665
Hpy188III TCNNGA 7 cut(s) 227, 377, 890, 1193, 1214, 1492, 1559
Hpy8I GTNNAC 4 cut(s) 690, 1299, 1639, 1654
HpyAV CCTTC 1 cut(s) 1419
HpyCH4III ACNGT 4 cut(s) 119, 163, 467, 1095
HpyF10VI GCNNNNNNNGC 5 cut(s) 306, 632, 652, 1063, 1610
HspAI GCGC 1 cut(s) 901
Ksp22I TGATCA 3 cut(s) 94, 241, 892
KspAI GTTAAC 1 cut(s) 1654
LmnI GCTCC 5 cut(s) 519, 666, 1069, 1312, 1665
Lsp1109I GCAGC 1 cut(s) 223
MaeI CTAG 8 cut(s) 339, 353, 377, 507, 525, 579, 585, 1226
MaeIII GTNAC 1 cut(s) 1414
MbiI CCGCTC 1 cut(s) 1072
MflI RGATCY 3 cut(s) 10, 1360, 1631
MhlI GDGCHC 2 cut(s) 524, 1713
MlsI TGGCCA 1 cut(s) 791
MluNI TGGCCA 1 cut(s) 791
MlyI GAGTC 2 cut(s) 241, 1356
MmeI TCCRAC 2 cut(s) 470, 784
Mox20I TGGCCA 1 cut(s) 791
MroXI GAANNNNTTC 2 cut(s) 936, 1184
MscI TGGCCA 1 cut(s) 791
MseI TTAA 7 cut(s) 171, 564, 867, 1455, 1539, 1551, 1653
MslI CAYNNNNRTG 1 cut(s) 1695
Msp20I TGGCCA 1 cut(s) 791
MspA1I CMGCKG 1 cut(s) 1135
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 2 cut(s) 111, 1152
MvaI CCWGG 1 cut(s) 1152
MvnI CGCG 1 cut(s) 903
MwoI GCNNNNNNNGC 5 cut(s) 306, 632, 652, 1063, 1610
NciI CCSGG 1 cut(s) 111
NlaIV GGNNCC 3 cut(s) 12, 668, 773
NspI RCATGY 2 cut(s) 1343, 1526
NspV TTCGAA 1 cut(s) 446
PaeI GCATGC 1 cut(s) 1343
PaeR7I CTCGAG 1 cut(s) 1344
PagI TCATGA 2 cut(s) 226, 889
PceI AGGCCT 1 cut(s) 675
PdmI GAANNNNTTC 2 cut(s) 936, 1184
PfeI GAWTC 5 cut(s) 274, 448, 493, 1122, 1165
PfoI TCCNGGA 1 cut(s) 109
PkrI GCNGC 2 cut(s) 238, 729
PleI GAGTC 2 cut(s) 241, 1355
PpsI GAGTC 2 cut(s) 241, 1355
PpuMI RGGWCCY 1 cut(s) 221
PshBI ATTAAT 1 cut(s) 1551
Psp5II RGGWCCY 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 1150
PspFI CCCAGC 1 cut(s) 1146
PspGI CCWGG 1 cut(s) 1150
PspN4I GGNNCC 3 cut(s) 12, 668, 773
PspPI GGNCC 3 cut(s) 221, 772, 975
PspPPI RGGWCCY 1 cut(s) 221
PspXI VCTCGAGB 1 cut(s) 1344
PsuI RGATCY 3 cut(s) 10, 1360, 1631
RsaI GTAC 3 cut(s) 373, 434, 1388
RsaNI GTAC 3 cut(s) 372, 433, 1387
RseI CAYNNNNRTG 1 cut(s) 1695
SaqAI TTAA 7 cut(s) 171, 564, 867, 1455, 1539, 1551, 1653
SatI GCNGC 2 cut(s) 237, 728
Sau96I GGNCC 3 cut(s) 221, 772, 975
ScaI AGTACT 1 cut(s) 373
SchI GAGTC 2 cut(s) 241, 1356
ScrFI CCNGG 2 cut(s) 111, 1152
SduI GDGCHC 2 cut(s) 524, 1713
Sfr274I CTCGAG 1 cut(s) 1344
SfuI TTCGAA 1 cut(s) 446
SinI GGWCC 2 cut(s) 221, 975
SlaI CTCGAG 1 cut(s) 1344
SmiMI CAYNNNNRTG 1 cut(s) 1695
SmlI CTYRAG 2 cut(s) 1016, 1344
SmoI CTYRAG 2 cut(s) 1016, 1344
SpeI ACTAGT 2 cut(s) 506, 524
SphI GCATGC 1 cut(s) 1343
SseBI AGGCCT 1 cut(s) 675
SsiI CCGC 4 cut(s) 727, 1072, 1108, 1133
SspI AATATT 1 cut(s) 389
SspMI CTAG 8 cut(s) 339, 353, 377, 507, 525, 579, 585, 1226
StuI AGGCCT 1 cut(s) 675
StyD4I CCNGG 2 cut(s) 109, 1150
StyI CCWWGG 3 cut(s) 670, 1203, 1626
TaaI ACNGT 4 cut(s) 119, 163, 467, 1095
TaqI TCGA 8 cut(s) 158, 191, 446, 533, 811, 1345, 1491, 1713
TatI WGTACW 3 cut(s) 371, 432, 1386
TauI GCSGC 1 cut(s) 730
TfiI GAWTC 5 cut(s) 274, 448, 493, 1122, 1165
Tru1I TTAA 7 cut(s) 171, 564, 867, 1455, 1539, 1551, 1653
Tru9I TTAA 7 cut(s) 171, 564, 867, 1455, 1539, 1551, 1653
TscAI CASTG 4 cut(s) 168, 472, 1036, 1288
TseI GCWGC 1 cut(s) 236
TspDTI ATGAA 2 cut(s) 893, 1481
TspGWI ACGGA 1 cut(s) 984
TspRI CASTG 4 cut(s) 168, 472, 1036, 1288
VpaK11BI GGWCC 2 cut(s) 221, 975
VspI ATTAAT 1 cut(s) 1551
XagI CCTNNNNNAGG 1 cut(s) 1505
XapI RAATTY 4 cut(s) 679, 932, 1183, 1256
XbaI TCTAGA 1 cut(s) 376
XceI RCATGY 2 cut(s) 1343, 1526
XcmI CCANNNNNNNNNTGG 1 cut(s) 1210
XhoI CTCGAG 1 cut(s) 1344
XmiI GTMKAC 1 cut(s) 1298
XmnI GAANNNNTTC 2 cut(s) 936, 1184
XspI CTAG 8 cut(s) 339, 353, 377, 507, 525, 579, 585, 1226
ZrmI AGTACT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.