Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004233

Physical Location & Seq

Genomic Coordinates Reverse (-)

6020410 .. 6025601

Gene Structure 5192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG058700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1977 bp

ATGGATAGGAAGAGAGAAGGTATGGAAAGGAAGAGAGAAGGTGAGGATTATGCAGACCTTCATCAGTGGTTTAATACTAGAGGCTTGCCGGAAAATCAGAACCGTCAGAATCGCCGTATCGATACCACTAATTCCTTCCCCGAATACCACCTCTCTCAAAACACTCCCCCTCCGTTAGCGGAATACCACCTTCATGAAAACCCTCCACCTCCCCCTCCTTCTGAAAATCAGATGTATTGGGATCCCATGTTGCCCAATCTCGTTCTTCAAAACCCACCAATCTTGCAAAACCCTCCCTACCATCAAAACACTAATCCCAAATTTGATCATCTTCTTTTTCTCGGAAACAGTACCAACAATCTTATCAACAACAATAATAATGGGTTTTCGACAGTGGGATTTAACAGTAACAATGGGTTTTGGACATTGGGATTTGGAACAGGTGGGAGAGGTCCTCATGATTTTGCTGCTGATCAGACTCATGATCAACTCGCAGCTTCTTTGAATCGGCTGAGCATATCCAATAATGGCAGTTCAGGCAATCAAAGAATACCCAACAAATATATGCCTAGCTCTACAATCCTAGGCAATGGTGGGTTCAGTACTCTAGAGCAGGAATATTTGGAGAGGTTGAACCAATATGCTTTCTTAATGGCTGAGCAGTACATGAGGCGTTCGAATCCCACTACTGCTAACAATGGAATACTCAATCCCCATAGTTGGAATCGGAATAGCACCAGTAGTAGTAGGAGCACTAGTCAATCGATTTATGGGGATCAATTTGGATTTGGTTTTAACCAAATTAGGTCTAGTTCTAGTTCTCAGCGGAATGGGGTTAGCAAGGGATCAAGGTTTGCTAATGGGGCTGGAAGACAGCGTTTCGGGCAAGAAGAAAGGAGCCAAGACCTGAATTTGATGTCCACCAAAGATCAAAGGCTTGGCAATGGGTCTGCACGGCGGCATATACCAAGTTATTACTCTGTCCCTTTGGAAGAGTTGAGGGGCCAAATTGCTATTGTGGCCAAAGATCATGTTGGATGTCGATTTTTACAAAAGAAGATTGAGGAGGGTAAGATGGAAGAGATTGAAATGATTTTTAATGAGGTTATGAAGGAGGGTCATGATCATTTGCGCGAGCTAATGGTAGATCAATTTGGGACTGAATTTATTCAGAAACTTGTGGAGGGGACTAACAGGGACGGATGGACCAAAATGCTTGATTTGGTGATGAGTGATGAGAGGAAACTCAAGGATATGTGCACTGACCAGCATGGAAGTCGTGCCATGCAGAAGTTGCTGGAGCGGGTTGAAACCCGAGAGCAACAGTCCTCGTTTATGCGGGTTCTGAAGCGAATCACAATTCCGCTGAGCAAAACCCAGCCTGGTTATTATGTGATTCAAGTTTGCTTGAAAAATTTCTCTCCTGACTGTACCAAGGGTGTTCTGGAATTAGTGCTAGATAACTGCCTTGCATTAGCAAAAGACAAATTTGGGTGTTGCTTAGTGCAAAGCAGTGTGCATTATGCGTATACTGAAGCTAAGGAGCGTCTTGTGGCTGACATAACTGAGCATGCTCGAGTCCTCTCCGAAGATCCTTACGGGAACTATGTTGTGCAGTACATAATTGGACTAAAAATACCTCGTGTAACAGCAGACATTTTAGGTCAGCTTCAGGGGTATTTTGTTAATCTGTCGATGAACAAGCATGGAAGTAATGTAGTCGAGAAAACCCTGAAAGAGGCTGGAGAAGAACATGCCAATATGATTATTAACGAGATGATTAACAGTCCTGAGTTTCTGAATGTTCTTCAAAATCCTTATGGGAATTATGTTGCTCAGTCTGCTCTTGCAGTATCCAAGGGATCTATTCACAATGCTCTTGTTAACCTCATTCGGAGCAATTACCCTCATCTGCACAGCCATCTGTATGGGAAAAGGGTGCTCGACAAAACCAGAGGAGGCAGGCATCGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF zf-CCCH

Protein Analysis

658

Amino Acids

74.67

Weight (kDa)

8.46

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUF	PF00806	338 - 370	8.6e-08	Pumilio-family RNA binding repeat
PUF	PF00806	488 - 521	4.8e-06	Pumilio-family RNA binding repeat
PUF	PF00806	560 - 594	6.7e-08	Pumilio-family RNA binding repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004233)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30780 FvH4_5g30780
malus_domestica	MD05G1093500.v1.1
prunus_persica	Prupe.8G138200_v2.0.a1 Prupe.8G138200_v2.0.a1
pyrus_communis	pycom15g06920
rosa_chinensis	RchiOBHm_Chr6g0254321 RchiOBHm_Chr6g0254351
rosa_laevigata	RLG00000014133 RLG00000014918 RLG00000014919 RLG00000014923 RLG00000014926
rosa_multiflora	Rmu_sc0006565.1_g000002 Rmu_sc0007138.1_g000009 Rmu_sc0027609.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210870 Rroxscaffold_7G00210910 Rroxscaffold_7G00210930
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG068500 Rh6AG068800 Rh6AG068900 Rh6BG061200 Rh6CG061000 Rh6CG061100 Rh6CG061500 Rh6DG058000 Rh6DG058300 Rh6DG058400 Rh6DG058700
rosa_wichuraiana	Rw6G006000 Rw6G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1303
AccI	GTMKAC	1 cut(s)	1529
AccII	CGCG	1 cut(s)	1134
AciI	CCGC	6 cut(s)	179, 826, 958, 1303, 1339, 1364
AclWI	GGATC	6 cut(s)	236, 249, 783, 853, 1586, 1870
AcoI	YGGCCR	1 cut(s)	1020
AcsI	RAATTY	5 cut(s)	320, 910, 1163, 1414, 1487
AcuI	CTGAAG	3 cut(s)	1367, 1554, 1655
AfaI	GTAC	5 cut(s)	352, 604, 665, 1432, 1619
AfiI	CCNNNNNNNGG	2 cut(s)	720, 1738
AgsI	TTSAA	8 cut(s)	269, 505, 634, 1088, 1310, 1400, 1411, 1811
AhlI	ACTAGT	1 cut(s)	755
AjnI	CCWGG	1 cut(s)	1381
AluBI	AGCT	5 cut(s)	497, 573, 1138, 1538, 1669
AluI	AGCT	5 cut(s)	497, 573, 1138, 1538, 1669
Alw21I	GWGCWC	3 cut(s)	755, 1262, 1944
Alw44I	GTGCAC	1 cut(s)	1258
AlwI	GGATC	6 cut(s)	236, 249, 783, 853, 1586, 1870
Ama87I	CYCGRG	2 cut(s)	1314, 1575
AoxI	GGCC	2 cut(s)	1003, 1020
ApaLI	GTGCAC	1 cut(s)	1258
ApeKI	GCWGC	2 cut(s)	467, 494
ApoI	RAATTY	5 cut(s)	320, 910, 1163, 1414, 1487
Asp700I	GAANNNNTTC	2 cut(s)	1167, 1415
AspA2I	CCTAGG	1 cut(s)	583
AspLEI	GCGC	1 cut(s)	1134
AspS9I	GGNCC	3 cut(s)	452, 1003, 1206
AsuHPI	GGTGA	2 cut(s)	53, 1237
AsuII	TTCGAA	1 cut(s)	677
AvaI	CYCGRG	2 cut(s)	1314, 1575
AvaII	GGWCC	2 cut(s)	452, 1206
AvrII	CCTAGG	1 cut(s)	583
BaeGI	GKGCMC	1 cut(s)	1262
BalI	TGGCCA	1 cut(s)	1022
BamHI	GGATCC	1 cut(s)	241
BauI	CACGAG	1 cut(s)	1641
BbsI	GAAGAC	1 cut(s)	877
Bbv12I	GWGCWC	3 cut(s)	755, 1262, 1944
BbvI	GCAGC	2 cut(s)	454, 506
BccI	CCATC	4 cut(s)	309, 1069, 1197, 1929
BceAI	ACGGC	2 cut(s)	99, 971
BcgI	CGANNNNNNTGC	2 cut(s)	1259, 1293
BciT130I	CCWGG	1 cut(s)	1383
BciVI	GTATCC	1 cut(s)	1864
BclI	TGATCA	4 cut(s)	325, 472, 484, 1123
BcuI	ACTAGT	1 cut(s)	755
BfaI	CTAG	8 cut(s)	78, 570, 584, 608, 756, 810, 816, 1457
BfuI	GTATCC	1 cut(s)	1864
BisI	GCNGC	3 cut(s)	468, 495, 959
BlnI	CCTAGG	1 cut(s)	583
BlpI	GCTNAGC	3 cut(s)	512, 657, 1367
BlsI	GCNGC	3 cut(s)	469, 496, 960
BmcAI	AGTACT	1 cut(s)	604
Bme1390I	CCNGG	1 cut(s)	1383
Bme18I	GGWCC	2 cut(s)	452, 1206
BmeT110I	CYCGRG	2 cut(s)	1314, 1575
BmgT120I	GGNCC	3 cut(s)	452, 1003, 1206
BmiI	GGNNCC	3 cut(s)	243, 899, 1004
BmrFI	CCNGG	1 cut(s)	1383
BpiI	GAAGAC	1 cut(s)	877
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BpmI	CTGGAG	2 cut(s)	1319, 1764
Bpu10I	CCTNAGC	1 cut(s)	1539
Bpu1102I	GCTNAGC	3 cut(s)	512, 657, 1367
Bpu14I	TTCGAA	1 cut(s)	677
BpuEI	CTTGAG	1 cut(s)	1232
Bsa29I	ATCGAT	2 cut(s)	120, 764
BsaJI	CCNNGG	3 cut(s)	583, 1434, 1857
BsaXI	ACNNNNNCTCC	4 cut(s)	154, 184, 742, 772
Bsc4I	CCNNNNNNNGG	2 cut(s)	720, 1738
Bse1I	ACTGG	1 cut(s)	738
Bse3DI	GCAATG	2 cut(s)	595, 949
BseBI	CCWGG	1 cut(s)	1383
BseCI	ATCGAT	2 cut(s)	120, 764
BseDI	CCNNGG	3 cut(s)	583, 1434, 1857
BseGI	GGATG	2 cut(s)	1043, 1208
BseLI	CCNNNNNNNGG	2 cut(s)	720, 1738
BseMI	GCAATG	2 cut(s)	595, 949
BseMII	CTCAG	7 cut(s)	503, 648, 836, 1358, 1557, 1782, 1850
BseNI	ACTGG	1 cut(s)	738
BseRI	GAGGAG	2 cut(s)	1079, 1971
BseSI	GKGCMC	1 cut(s)	1262
BseXI	GCAGC	2 cut(s)	454, 506
BseYI	CCCAGC	1 cut(s)	1377
BsgI	GTGCAG	3 cut(s)	936, 1634, 1898
Bsh1236I	CGCG	1 cut(s)	1134
BshFI	GGCC	2 cut(s)	1005, 1022
BshVI	ATCGAT	2 cut(s)	120, 764
BsiHKAI	GWGCWC	3 cut(s)	755, 1262, 1944
BsiHKCI	CYCGRG	2 cut(s)	1314, 1575
BsiSI	CCGG	1 cut(s)	89
BslFI	GGGAC	4 cut(s)	968, 1171, 1201, 1211
BslI	CCNNNNNNNGG	2 cut(s)	720, 1738
BsmFI	GGGAC	4 cut(s)	968, 1171, 1201, 1211
BsnI	GGCC	2 cut(s)	1005, 1022
BsoBI	CYCGRG	2 cut(s)	1314, 1575
Bsp119I	TTCGAA	1 cut(s)	677
Bsp1286I	GDGCHC	3 cut(s)	755, 1262, 1944
Bsp1720I	GCTNAGC	3 cut(s)	512, 657, 1367
BspACI	CCGC	6 cut(s)	179, 826, 958, 1303, 1339, 1364
BspANI	GGCC	2 cut(s)	1005, 1022
BspCNI	CTCAG	7 cut(s)	504, 649, 835, 1359, 1558, 1783, 1849
BspDI	ATCGAT	2 cut(s)	120, 764
BspFNI	CGCG	1 cut(s)	1134
BspHI	TCATGA	4 cut(s)	193, 457, 481, 1120
BspLI	GGNNCC	3 cut(s)	243, 899, 1004
BspPI	GGATC	6 cut(s)	236, 249, 783, 853, 1586, 1870
BspT104I	TTCGAA	1 cut(s)	677
BsrBI	CCGCTC	1 cut(s)	1303
BsrDI	GCAATG	2 cut(s)	595, 949
BsrI	ACTGG	1 cut(s)	738
BssECI	CCNNGG	3 cut(s)	583, 1434, 1857
BssNAI	GTATAC	1 cut(s)	1530
BssSI	CACGAG	1 cut(s)	1641
BssT1I	CCWWGG	3 cut(s)	583, 1434, 1857
Bst1107I	GTATAC	1 cut(s)	1530
Bst2BI	CACGAG	1 cut(s)	1641
Bst2UI	CCWGG	1 cut(s)	1383
Bst4CI	ACNGT	7 cut(s)	104, 350, 394, 407, 1326, 1430, 1787
Bst6I	CTCTTC	4 cut(s)	5, 26, 987, 1074
BstAPI	GCANNNNNTGC	1 cut(s)	1294
BstBI	TTCGAA	1 cut(s)	677
BstC8I	GCNNGC	4 cut(s)	86, 1136, 1572, 1964
BstDEI	CTNAG	9 cut(s)	512, 657, 822, 1367, 1501, 1539, 1566, 1791, 1836
BstENI	CCTNNNNNAGG	1 cut(s)	1736
BstF5I	GGATG	2 cut(s)	1043, 1208
BstFNI	CGCG	1 cut(s)	1134
BstHHI	GCGC	1 cut(s)	1134
BstMWI	GCNNNNNNNGC	6 cut(s)	537, 863, 883, 1019, 1294, 1841
BstNI	CCWGG	1 cut(s)	1383
BstNSI	RCATGY	2 cut(s)	1574, 1757
BstSCI	CCNGG	1 cut(s)	1381
BstSLI	GKGCMC	1 cut(s)	1262
BstUI	CGCG	1 cut(s)	1134
BstV1I	GCAGC	2 cut(s)	454, 506
BstV2I	GAAGAC	1 cut(s)	877
BstX2I	RGATCY	3 cut(s)	241, 1591, 1862
BstXI	CCANNNNNNTGG	1 cut(s)	1928
BstYI	RGATCY	3 cut(s)	241, 1591, 1862
BstZ17I	GTATAC	1 cut(s)	1530
Bsu15I	ATCGAT	2 cut(s)	120, 764
BsuI	GTATCC	1 cut(s)	1864
BsuRI	GGCC	2 cut(s)	1005, 1022
BsuTUI	ATCGAT	2 cut(s)	120, 764
BtsCI	GGATG	2 cut(s)	1043, 1208
BtsI	GCAGTG	1 cut(s)	1519
BtsIMutI	CAGTG	4 cut(s)	71, 399, 1260, 1519
Cac8I	GCNNGC	4 cut(s)	86, 1136, 1572, 1964
CciI	TCATGA	4 cut(s)	193, 457, 481, 1120
CfoI	GCGC	1 cut(s)	1134
Cfr13I	GGNCC	3 cut(s)	452, 1003, 1206
ClaI	ATCGAT	2 cut(s)	120, 764
CseI	GACGC	1 cut(s)	1535
Csp6I	GTAC	5 cut(s)	351, 603, 664, 1431, 1618
CspCI	CAANNNNNGTGG	2 cut(s)	264, 299
CviQI	GTAC	5 cut(s)	351, 603, 664, 1431, 1618
DdeI	CTNAG	9 cut(s)	512, 657, 822, 1367, 1501, 1539, 1566, 1791, 1836
EaeI	YGGCCR	1 cut(s)	1020
Eam1104I	CTCTTC	4 cut(s)	5, 26, 987, 1074
EarI	CTCTTC	4 cut(s)	5, 26, 987, 1074
Eco130I	CCWWGG	3 cut(s)	583, 1434, 1857
Eco47I	GGWCC	2 cut(s)	452, 1206
Eco57I	CTGAAG	3 cut(s)	1367, 1554, 1655
Eco88I	CYCGRG	2 cut(s)	1314, 1575
EcoNI	CCTNNNNNAGG	1 cut(s)	1736
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	1381
EcoT14I	CCWWGG	3 cut(s)	583, 1434, 1857
ErhI	CCWWGG	3 cut(s)	583, 1434, 1857
FaqI	GGGAC	4 cut(s)	968, 1171, 1201, 1211
FauI	CCCGC	2 cut(s)	1296, 1332
FbaI	TGATCA	4 cut(s)	325, 472, 484, 1123
FblI	GTMKAC	1 cut(s)	1529
Fnu4HI	GCNGC	3 cut(s)	468, 495, 959
FokI	GGATG	2 cut(s)	1050, 1215
Fsp4HI	GCNGC	3 cut(s)	468, 495, 959
FspBI	CTAG	8 cut(s)	78, 570, 584, 608, 756, 810, 816, 1457
GlaI	GCGC	1 cut(s)	1133
GluI	GCNGC	3 cut(s)	468, 495, 959
GsaI	CCCAGC	1 cut(s)	1381
GsuI	CTGGAG	2 cut(s)	1319, 1764
HaeIII	GGCC	2 cut(s)	1005, 1022
HapII	CCGG	1 cut(s)	89
HgaI	GACGC	1 cut(s)	1535
HhaI	GCGC	1 cut(s)	1134
Hin6I	GCGC	1 cut(s)	1132
HinP1I	GCGC	1 cut(s)	1132
HincII	GTYRAC	1 cut(s)	1885
HindII	GTYRAC	1 cut(s)	1885
HinfI	GANTC	8 cut(s)	109, 478, 505, 679, 724, 1353, 1396, 1578
HpaI	GTTAAC	1 cut(s)	1885
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	2 cut(s)	53, 1237
Hpy166II	GTNNAC	4 cut(s)	921, 1260, 1530, 1885
Hpy188III	TCNNGA	9 cut(s)	194, 458, 482, 608, 1121, 1424, 1445, 1723, 1790
Hpy8I	GTNNAC	4 cut(s)	921, 1260, 1530, 1885
HpyAV	CCTTC	7 cut(s)	11, 32, 68, 145, 200, 228, 1105
HpyCH4III	ACNGT	7 cut(s)	104, 350, 394, 407, 1326, 1430, 1787
HpyF10VI	GCNNNNNNNGC	6 cut(s)	537, 863, 883, 1019, 1294, 1841
HpyF3I	CTNAG	9 cut(s)	512, 657, 822, 1367, 1501, 1539, 1566, 1791, 1836
HspAI	GCGC	1 cut(s)	1132
Ksp22I	TGATCA	4 cut(s)	325, 472, 484, 1123
KspAI	GTTAAC	1 cut(s)	1885
LmnI	GCTCC	5 cut(s)	750, 897, 1300, 1543, 1896
Lsp1109I	GCAGC	2 cut(s)	454, 506
MaeI	CTAG	8 cut(s)	78, 570, 584, 608, 756, 810, 816, 1457
MaeIII	GTNAC	2 cut(s)	407, 1645
MbiI	CCGCTC	1 cut(s)	1303
MflI	RGATCY	3 cut(s)	241, 1591, 1862
MhlI	GDGCHC	3 cut(s)	755, 1262, 1944
MlsI	TGGCCA	1 cut(s)	1022
MluNI	TGGCCA	1 cut(s)	1022
MlyI	GAGTC	2 cut(s)	472, 1587
MmeI	TCCRAC	2 cut(s)	701, 1015
Mox20I	TGGCCA	1 cut(s)	1022
MroXI	GAANNNNTTC	2 cut(s)	1167, 1415
MscI	TGGCCA	1 cut(s)	1022
MseI	TTAA	9 cut(s)	72, 402, 650, 795, 1098, 1686, 1770, 1782, 1884
MslI	CAYNNNNRTG	2 cut(s)	192, 1926
Msp20I	TGGCCA	1 cut(s)	1022
MspA1I	CMGCKG	2 cut(s)	826, 1366
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	1383
MvaI	CCWGG	1 cut(s)	1383
MvnI	CGCG	1 cut(s)	1134
MwoI	GCNNNNNNNGC	6 cut(s)	537, 863, 883, 1019, 1294, 1841
NlaIV	GGNNCC	3 cut(s)	243, 899, 1004
NspI	RCATGY	2 cut(s)	1574, 1757
NspV	TTCGAA	1 cut(s)	677
PaeI	GCATGC	1 cut(s)	1574
PaeR7I	CTCGAG	1 cut(s)	1575
PagI	TCATGA	4 cut(s)	193, 457, 481, 1120
PdmI	GAANNNNTTC	2 cut(s)	1167, 1415
PfeI	GAWTC	6 cut(s)	109, 505, 679, 724, 1353, 1396
PkrI	GCNGC	3 cut(s)	469, 496, 960
PleI	GAGTC	2 cut(s)	472, 1586
PpsI	GAGTC	2 cut(s)	472, 1586
PpuMI	RGGWCCY	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	1381
PspFI	CCCAGC	1 cut(s)	1377
PspGI	CCWGG	1 cut(s)	1381
PspN4I	GGNNCC	3 cut(s)	243, 899, 1004
PspPI	GGNCC	3 cut(s)	452, 1003, 1206
PspPPI	RGGWCCY	1 cut(s)	452
PspXI	VCTCGAGB	1 cut(s)	1575
PsuI	RGATCY	3 cut(s)	241, 1591, 1862
RsaI	GTAC	5 cut(s)	352, 604, 665, 1432, 1619
RsaNI	GTAC	5 cut(s)	351, 603, 664, 1431, 1618
RseI	CAYNNNNRTG	2 cut(s)	192, 1926
SaqAI	TTAA	9 cut(s)	72, 402, 650, 795, 1098, 1686, 1770, 1782, 1884
SatI	GCNGC	3 cut(s)	468, 495, 959
Sau96I	GGNCC	3 cut(s)	452, 1003, 1206
ScaI	AGTACT	1 cut(s)	604
SchI	GAGTC	2 cut(s)	472, 1587
ScrFI	CCNGG	1 cut(s)	1383
SduI	GDGCHC	3 cut(s)	755, 1262, 1944
Sfr274I	CTCGAG	1 cut(s)	1575
SfuI	TTCGAA	1 cut(s)	677
SinI	GGWCC	2 cut(s)	452, 1206
SlaI	CTCGAG	1 cut(s)	1575
SmiMI	CAYNNNNRTG	2 cut(s)	192, 1926
SmlI	CTYRAG	2 cut(s)	1247, 1575
SmoI	CTYRAG	2 cut(s)	1247, 1575
SpeI	ACTAGT	1 cut(s)	755
SphI	GCATGC	1 cut(s)	1574
SsiI	CCGC	6 cut(s)	179, 826, 958, 1303, 1339, 1364
SspI	AATATT	1 cut(s)	620
SspMI	CTAG	8 cut(s)	78, 570, 584, 608, 756, 810, 816, 1457
StyD4I	CCNGG	1 cut(s)	1381
StyI	CCWWGG	3 cut(s)	583, 1434, 1857
TaaI	ACNGT	7 cut(s)	104, 350, 394, 407, 1326, 1430, 1787
TaqI	TCGA	9 cut(s)	120, 389, 677, 764, 1042, 1576, 1694, 1722, 1944
TatI	WGTACW	3 cut(s)	602, 663, 1617
TauI	GCSGC	1 cut(s)	961
TfiI	GAWTC	6 cut(s)	109, 505, 679, 724, 1353, 1396
Tru1I	TTAA	9 cut(s)	72, 402, 650, 795, 1098, 1686, 1770, 1782, 1884
Tru9I	TTAA	9 cut(s)	72, 402, 650, 795, 1098, 1686, 1770, 1782, 1884
TscAI	CASTG	4 cut(s)	71, 399, 1267, 1519
TseI	GCWGC	2 cut(s)	467, 494
TspDTI	ATGAA	5 cut(s)	50, 182, 210, 1124, 1712
TspGWI	ACGGA	2 cut(s)	162, 1215
TspRI	CASTG	4 cut(s)	71, 399, 1267, 1519
VneI	GTGCAC	1 cut(s)	1258
VpaK11BI	GGWCC	2 cut(s)	452, 1206
XagI	CCTNNNNNAGG	1 cut(s)	1736
XapI	RAATTY	5 cut(s)	320, 910, 1163, 1414, 1487
XbaI	TCTAGA	1 cut(s)	607
XceI	RCATGY	2 cut(s)	1574, 1757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1441
XhoI	CTCGAG	1 cut(s)	1575
XmaJI	CCTAGG	1 cut(s)	583
XmiI	GTMKAC	1 cut(s)	1529
XmnI	GAANNNNTTC	2 cut(s)	1167, 1415
XspI	CTAG	8 cut(s)	78, 570, 584, 608, 756, 810, 816, 1457
ZrmI	AGTACT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.