Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006565.1

Orthogroup ID

OG0004233

Physical Location & Seq

Genomic Coordinates Reverse (-)

3510 .. 7989

Gene Structure 4480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006565.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

atgtattgggatccaatgttgcccaatctcgttcttcaaaacccaccaatcttgcaaaaccctacctaccatcaaaacgctaatcccaactttgatcatcttctttttcctggaaacaataccaacaatcttatcaacaacaataacaatgagttttcgacagtgggatttaacagtaccaatgagttttcgacattgggatttggaacaggtgggggagtttctcatgattttgctgctgatcagactcatgatcaactcgcagcttctttgaatcggctgagcatatacaatagtggcagttcaggcaatcaaagaatacccaacaactatatgcctagctctacaaccctaggcaatggtgggttcagtactctagagcaggaatatttggagaggttgaaccaatatgctttcttaatggctgagcagtacatgaggcgttcgaatcccactactgctaacaatggaatactcaatccccatagttggaatcggaatagcaccagtagtagtaggagcactagtcaatcgatttatggggatcaatttggattaggttttaaccaaattaggggccaaattgcttttgtggccaaagatcatgttggatgtcgatttttacaaaagaagattgaggagggtaagatggaagagattgaaatgatttttaatgaggttatgaaggagggtcatgatcatttgcgcgagctaatggtagatcaatttgggactgaatttattcagaaacttgtggaggggactaatagggacggatggaccaaaatgcttgatttggtgatgagtgatgagaggaaactcaaggatatatgcactgaccagcatggaagtcgtgccatgcagaagttgctggagcgggttgaaacccgagagcaacagtcctcgtttatgcgggttctgaagcgaatcacaattccgctgagcaaaacccagcctggttattatgtgattcaagtttgcttgaaaaatttctctcctgactgcaccaagggtgttatggaattagtgctagataactgccttgcattagcaaaagacaaatttgggtgttgcttagtgcaaagcagtgtgcattatgcgtatactgaagctaaggagcgtcttgtggctgacataactgagcatgctcgagtcctctccgaagatccttacgggcaagaatatattagtaccaaccttcttgtggttgctaggtactacaatatattaggggcagtcttaaaacttgttgttgtttcggcttttaggcttgtgtttggttgttggttgtgtgtttttctggtggggaagttagcgtgcagggaaaggaatctgctctataatatggcatgtttggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF zf-CCCH

Protein Analysis

453

Amino Acids

51.31

Weight (kDa)

6.15

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004233)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30780 FvH4_5g30780
malus_domestica	MD05G1093500.v1.1
prunus_persica	Prupe.8G138200_v2.0.a1 Prupe.8G138200_v2.0.a1
pyrus_communis	pycom15g06920
rosa_chinensis	RchiOBHm_Chr6g0254321 RchiOBHm_Chr6g0254351
rosa_laevigata	RLG00000014133 RLG00000014918 RLG00000014919 RLG00000014923 RLG00000014926
rosa_multiflora	Rmu_sc0006565.1_g000002 Rmu_sc0007138.1_g000009 Rmu_sc0027609.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210870 Rroxscaffold_7G00210910 Rroxscaffold_7G00210930
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG068500 Rh6AG068800 Rh6AG068900 Rh6BG061200 Rh6CG061000 Rh6CG061100 Rh6CG061500 Rh6DG058000 Rh6DG058300 Rh6DG058400 Rh6DG058700
rosa_wichuraiana	Rw6G006000 Rw6G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	877
AccI	GTMKAC	1 cut(s)	1103
AccII	CGCG	1 cut(s)	708
AciI	CCGC	3 cut(s)	877, 913, 938
AclWI	GGATC	4 cut(s)	5, 18, 552, 1160
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	3 cut(s)	737, 988, 1061
AcuI	CTGAAG	2 cut(s)	941, 1128
AfaI	GTAC	5 cut(s)	178, 373, 434, 1192, 1217
AfiI	CCNNNNNNNGG	3 cut(s)	489, 574, 1204
AgsI	TTSAA	7 cut(s)	38, 274, 403, 662, 884, 974, 985
AhlI	ACTAGT	1 cut(s)	524
AjnI	CCWGG	2 cut(s)	109, 955
AluBI	AGCT	4 cut(s)	266, 342, 712, 1112
AluI	AGCT	4 cut(s)	266, 342, 712, 1112
Alw21I	GWGCWC	1 cut(s)	524
AlwI	GGATC	4 cut(s)	5, 18, 552, 1160
Ama87I	CYCGRG	2 cut(s)	888, 1149
AoxI	GGCC	2 cut(s)	577, 594
ApeKI	GCWGC	2 cut(s)	236, 263
ApoI	RAATTY	3 cut(s)	737, 988, 1061
Asp700I	GAANNNNTTC	2 cut(s)	741, 989
AspA2I	CCTAGG	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	708
AspS9I	GGNCC	2 cut(s)	577, 780
AsuHPI	GGTGA	1 cut(s)	811
AsuII	TTCGAA	1 cut(s)	446
AvaI	CYCGRG	2 cut(s)	888, 1149
AvaII	GGWCC	1 cut(s)	780
AvrII	CCTAGG	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	596
BamHI	GGATCC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	524
BbvI	GCAGC	2 cut(s)	223, 275
BccI	CCATC	3 cut(s)	78, 643, 771
BcgI	CGANNNNNNTGC	2 cut(s)	833, 867
BciT130I	CCWGG	2 cut(s)	111, 957
BclI	TGATCA	4 cut(s)	94, 241, 253, 697
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	6 cut(s)	339, 353, 377, 525, 1031, 1212
BisI	GCNGC	2 cut(s)	237, 264
BlnI	CCTAGG	1 cut(s)	352
BlpI	GCTNAGC	3 cut(s)	281, 426, 941
BlsI	GCNGC	2 cut(s)	238, 265
BmcAI	AGTACT	1 cut(s)	373
Bme1390I	CCNGG	2 cut(s)	111, 957
Bme18I	GGWCC	1 cut(s)	780
BmeT110I	CYCGRG	2 cut(s)	888, 1149
BmgT120I	GGNCC	2 cut(s)	577, 780
BmiI	GGNNCC	2 cut(s)	12, 578
BmrFI	CCNGG	2 cut(s)	111, 957
BpmI	CTGGAG	1 cut(s)	893
Bpu10I	CCTNAGC	1 cut(s)	1113
Bpu1102I	GCTNAGC	3 cut(s)	281, 426, 941
Bpu14I	TTCGAA	1 cut(s)	446
BpuEI	CTTGAG	1 cut(s)	806
Bsa29I	ATCGAT	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	352, 1008
BsaXI	ACNNNNNCTCC	2 cut(s)	511, 541
Bsc4I	CCNNNNNNNGG	3 cut(s)	489, 574, 1204
Bse1I	ACTGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	364
BseBI	CCWGG	2 cut(s)	111, 957
BseCI	ATCGAT	1 cut(s)	533
BseDI	CCNNGG	2 cut(s)	352, 1008
BseGI	GGATG	2 cut(s)	617, 782
BseLI	CCNNNNNNNGG	3 cut(s)	489, 574, 1204
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	4 cut(s)	272, 417, 932, 1131
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	1 cut(s)	653
BseXI	GCAGC	2 cut(s)	223, 275
BseYI	CCCAGC	1 cut(s)	951
BsgI	GTGCAG	2 cut(s)	988, 1339
Bsh1236I	CGCG	1 cut(s)	708
BshFI	GGCC	2 cut(s)	579, 596
BshVI	ATCGAT	1 cut(s)	533
BsiHKAI	GWGCWC	1 cut(s)	524
BsiHKCI	CYCGRG	2 cut(s)	888, 1149
BslFI	GGGAC	3 cut(s)	745, 775, 785
BslI	CCNNNNNNNGG	3 cut(s)	489, 574, 1204
BsmFI	GGGAC	3 cut(s)	745, 775, 785
BsnI	GGCC	2 cut(s)	579, 596
BsoBI	CYCGRG	2 cut(s)	888, 1149
Bsp119I	TTCGAA	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	524
Bsp143I	GATC	9 cut(s)	10, 94, 241, 253, 544, 601, 697, 721, 1165
Bsp1720I	GCTNAGC	3 cut(s)	281, 426, 941
BspACI	CCGC	3 cut(s)	877, 913, 938
BspANI	GGCC	2 cut(s)	579, 596
BspCNI	CTCAG	4 cut(s)	273, 418, 933, 1132
BspDI	ATCGAT	1 cut(s)	533
BspFNI	CGCG	1 cut(s)	708
BspHI	TCATGA	3 cut(s)	226, 250, 694
BspLI	GGNNCC	2 cut(s)	12, 578
BspPI	GGATC	4 cut(s)	5, 18, 552, 1160
BspT104I	TTCGAA	1 cut(s)	446
BsrBI	CCGCTC	1 cut(s)	877
BsrDI	GCAATG	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	507
BssECI	CCNNGG	2 cut(s)	352, 1008
BssMI	GATC	9 cut(s)	10, 94, 241, 253, 544, 601, 697, 721, 1165
BssNAI	GTATAC	1 cut(s)	1104
BssT1I	CCWWGG	2 cut(s)	352, 1008
Bst1107I	GTATAC	1 cut(s)	1104
Bst2UI	CCWGG	2 cut(s)	111, 957
Bst4CI	ACNGT	3 cut(s)	163, 176, 900
Bst6I	CTCTTC	1 cut(s)	648
BstAPI	GCANNNNNTGC	1 cut(s)	868
BstBI	TTCGAA	1 cut(s)	446
BstC8I	GCNNGC	3 cut(s)	710, 1146, 1318
BstDEI	CTNAG	6 cut(s)	281, 426, 941, 1075, 1113, 1140
BstF5I	GGATG	2 cut(s)	617, 782
BstFNI	CGCG	1 cut(s)	708
BstHHI	GCGC	1 cut(s)	708
BstKTI	GATC	9 cut(s)	13, 97, 244, 256, 547, 604, 700, 724, 1168
BstMBI	GATC	9 cut(s)	10, 94, 241, 253, 544, 601, 697, 721, 1165
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 593, 868
BstNI	CCWGG	2 cut(s)	111, 957
BstNSI	RCATGY	2 cut(s)	1148, 1353
BstSCI	CCNGG	2 cut(s)	109, 955
BstUI	CGCG	1 cut(s)	708
BstV1I	GCAGC	2 cut(s)	223, 275
BstX2I	RGATCY	2 cut(s)	10, 1165
BstYI	RGATCY	2 cut(s)	10, 1165
BstZ17I	GTATAC	1 cut(s)	1104
Bsu15I	ATCGAT	1 cut(s)	533
BsuRI	GGCC	2 cut(s)	579, 596
BsuTUI	ATCGAT	1 cut(s)	533
BtsCI	GGATG	2 cut(s)	617, 782
BtsI	GCAGTG	1 cut(s)	1093
BtsIMutI	CAGTG	3 cut(s)	168, 834, 1093
Cac8I	GCNNGC	3 cut(s)	710, 1146, 1318
CciI	TCATGA	3 cut(s)	226, 250, 694
CfoI	GCGC	1 cut(s)	708
Cfr13I	GGNCC	2 cut(s)	577, 780
ClaI	ATCGAT	1 cut(s)	533
CseI	GACGC	1 cut(s)	1109
Csp6I	GTAC	5 cut(s)	177, 372, 433, 1191, 1216
CspCI	CAANNNNNGTGG	2 cut(s)	33, 68
CviAII	CATG	9 cut(s)	227, 251, 436, 605, 695, 845, 859, 1145, 1350
CviQI	GTAC	5 cut(s)	177, 372, 433, 1191, 1216
DdeI	CTNAG	6 cut(s)	281, 426, 941, 1075, 1113, 1140
DpnI	GATC	9 cut(s)	12, 96, 243, 255, 546, 603, 699, 723, 1167
DpnII	GATC	9 cut(s)	10, 94, 241, 253, 544, 601, 697, 721, 1165
EaeI	YGGCCR	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Eco130I	CCWWGG	2 cut(s)	352, 1008
Eco47I	GGWCC	1 cut(s)	780
Eco57I	CTGAAG	2 cut(s)	941, 1128
Eco88I	CYCGRG	2 cut(s)	888, 1149
EcoRII	CCWGG	2 cut(s)	109, 955
EcoT14I	CCWWGG	2 cut(s)	352, 1008
ErhI	CCWWGG	2 cut(s)	352, 1008
FaeI	CATG	9 cut(s)	230, 254, 439, 608, 698, 848, 862, 1148, 1353
FaqI	GGGAC	3 cut(s)	745, 775, 785
FatI	CATG	9 cut(s)	226, 250, 435, 604, 694, 844, 858, 1144, 1349
FauI	CCCGC	2 cut(s)	870, 906
FbaI	TGATCA	4 cut(s)	94, 241, 253, 697
FblI	GTMKAC	1 cut(s)	1103
Fnu4HI	GCNGC	2 cut(s)	237, 264
FokI	GGATG	2 cut(s)	624, 789
Fsp4HI	GCNGC	2 cut(s)	237, 264
FspBI	CTAG	6 cut(s)	339, 353, 377, 525, 1031, 1212
GlaI	GCGC	1 cut(s)	707
GluI	GCNGC	2 cut(s)	237, 264
GsaI	CCCAGC	1 cut(s)	955
GsuI	CTGGAG	1 cut(s)	893
HaeIII	GGCC	2 cut(s)	579, 596
HgaI	GACGC	1 cut(s)	1109
HhaI	GCGC	1 cut(s)	708
Hin1II	CATG	9 cut(s)	230, 254, 439, 608, 698, 848, 862, 1148, 1353
Hin6I	GCGC	1 cut(s)	706
HinP1I	GCGC	1 cut(s)	706
HinfI	GANTC	8 cut(s)	247, 274, 448, 493, 927, 970, 1152, 1330
HphI	GGTGA	1 cut(s)	811
Hpy166II	GTNNAC	1 cut(s)	1104
Hpy188I	TCNGA	5 cut(s)	246, 498, 747, 921, 1162
Hpy188III	TCNNGA	5 cut(s)	227, 251, 377, 695, 998
Hpy8I	GTNNAC	1 cut(s)	1104
HpyAV	CCTTC	2 cut(s)	679, 1208
HpyCH4III	ACNGT	3 cut(s)	163, 176, 900
HpyCH4V	TGCA	8 cut(s)	55, 834, 862, 1005, 1046, 1081, 1093, 1320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 593, 868
HpyF3I	CTNAG	6 cut(s)	281, 426, 941, 1075, 1113, 1140
Hsp92II	CATG	9 cut(s)	230, 254, 439, 608, 698, 848, 862, 1148, 1353
HspAI	GCGC	1 cut(s)	706
Ksp22I	TGATCA	4 cut(s)	94, 241, 253, 697
Kzo9I	GATC	9 cut(s)	10, 94, 241, 253, 544, 601, 697, 721, 1165
LmnI	GCTCC	3 cut(s)	519, 874, 1117
Lsp1109I	GCAGC	2 cut(s)	223, 275
MaeI	CTAG	6 cut(s)	339, 353, 377, 525, 1031, 1212
MalI	GATC	9 cut(s)	12, 96, 243, 255, 546, 603, 699, 723, 1167
MbiI	CCGCTC	1 cut(s)	877
MboI	GATC	9 cut(s)	10, 94, 241, 253, 544, 601, 697, 721, 1165
MboII	GAAGA	5 cut(s)	26, 92, 643, 665, 1175
MflI	RGATCY	2 cut(s)	10, 1165
MhlI	GDGCHC	1 cut(s)	524
MlsI	TGGCCA	1 cut(s)	596
MluCI	AATT	9 cut(s)	548, 570, 582, 725, 737, 933, 988, 1022, 1061
MluNI	TGGCCA	1 cut(s)	596
MlyI	GAGTC	2 cut(s)	241, 1161
MmeI	TCCRAC	2 cut(s)	470, 589
Mox20I	TGGCCA	1 cut(s)	596
MroXI	GAANNNNTTC	2 cut(s)	741, 989
MscI	TGGCCA	1 cut(s)	596
MseI	TTAA	5 cut(s)	171, 419, 564, 672, 1241
Msp20I	TGGCCA	1 cut(s)	596
MspA1I	CMGCKG	1 cut(s)	940
MspR9I	CCNGG	2 cut(s)	111, 957
MvaI	CCWGG	2 cut(s)	111, 957
MvnI	CGCG	1 cut(s)	708
MwoI	GCNNNNNNNGC	3 cut(s)	306, 593, 868
NdeII	GATC	9 cut(s)	10, 94, 241, 253, 544, 601, 697, 721, 1165
NlaIII	CATG	9 cut(s)	230, 254, 439, 608, 698, 848, 862, 1148, 1353
NlaIV	GGNNCC	2 cut(s)	12, 578
NspI	RCATGY	2 cut(s)	1148, 1353
NspV	TTCGAA	1 cut(s)	446
PaeI	GCATGC	1 cut(s)	1148
PaeR7I	CTCGAG	1 cut(s)	1149
PagI	TCATGA	3 cut(s)	226, 250, 694
PdmI	GAANNNNTTC	2 cut(s)	741, 989
PfeI	GAWTC	6 cut(s)	274, 448, 493, 927, 970, 1330
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	238, 265
PleI	GAGTC	2 cut(s)	241, 1160
PpsI	GAGTC	2 cut(s)	241, 1160
Psp6I	CCWGG	2 cut(s)	109, 955
PspFI	CCCAGC	1 cut(s)	951
PspGI	CCWGG	2 cut(s)	109, 955
PspN4I	GGNNCC	2 cut(s)	12, 578
PspPI	GGNCC	2 cut(s)	577, 780
PspXI	VCTCGAGB	1 cut(s)	1149
PsuI	RGATCY	2 cut(s)	10, 1165
RsaI	GTAC	5 cut(s)	178, 373, 434, 1192, 1217
RsaNI	GTAC	5 cut(s)	177, 372, 433, 1191, 1216
SaqAI	TTAA	5 cut(s)	171, 419, 564, 672, 1241
SatI	GCNGC	2 cut(s)	237, 264
Sau3AI	GATC	9 cut(s)	10, 94, 241, 253, 544, 601, 697, 721, 1165
Sau96I	GGNCC	2 cut(s)	577, 780
ScaI	AGTACT	1 cut(s)	373
SchI	GAGTC	2 cut(s)	241, 1161
ScrFI	CCNGG	2 cut(s)	111, 957
SduI	GDGCHC	1 cut(s)	524
Sfr274I	CTCGAG	1 cut(s)	1149
SfuI	TTCGAA	1 cut(s)	446
SinI	GGWCC	1 cut(s)	780
SlaI	CTCGAG	1 cut(s)	1149
SmlI	CTYRAG	2 cut(s)	821, 1149
SmoI	CTYRAG	2 cut(s)	821, 1149
SpeI	ACTAGT	1 cut(s)	524
SphI	GCATGC	1 cut(s)	1148
Sse9I	AATT	9 cut(s)	548, 570, 582, 725, 737, 933, 988, 1022, 1061
SsiI	CCGC	3 cut(s)	877, 913, 938
SspI	AATATT	1 cut(s)	389
SspMI	CTAG	6 cut(s)	339, 353, 377, 525, 1031, 1212
StyD4I	CCNGG	2 cut(s)	109, 955
StyI	CCWWGG	2 cut(s)	352, 1008
TaaI	ACNGT	3 cut(s)	163, 176, 900
TaqI	TCGA	6 cut(s)	158, 191, 446, 533, 616, 1150
TasI	AATT	9 cut(s)	548, 570, 582, 725, 737, 933, 988, 1022, 1061
TatI	WGTACW	2 cut(s)	371, 432
TfiI	GAWTC	6 cut(s)	274, 448, 493, 927, 970, 1330
Tru1I	TTAA	5 cut(s)	171, 419, 564, 672, 1241
Tru9I	TTAA	5 cut(s)	171, 419, 564, 672, 1241
TscAI	CASTG	3 cut(s)	168, 841, 1093
TseI	GCWGC	2 cut(s)	236, 263
TspDTI	ATGAA	1 cut(s)	698
TspGWI	ACGGA	1 cut(s)	789
TspRI	CASTG	3 cut(s)	168, 841, 1093
VpaK11BI	GGWCC	1 cut(s)	780
XapI	RAATTY	3 cut(s)	737, 988, 1061
XbaI	TCTAGA	1 cut(s)	376
XceI	RCATGY	2 cut(s)	1148, 1353
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1015, 1201
XhoI	CTCGAG	1 cut(s)	1149
XmaJI	CCTAGG	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	1103
XmnI	GAANNNNTTC	2 cut(s)	741, 989
XspI	CTAG	6 cut(s)	339, 353, 377, 525, 1031, 1212
ZrmI	AGTACT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.