Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027609.1

Orthogroup ID

OG0004233

Physical Location & Seq

Genomic Coordinates Forward (+)

9732 .. 13561

Gene Structure 3830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027609.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atgtattgggatcccatgttgcccaatcaggttcttcaaaacccaccaatcttgcaaaaccctccctaccatcaaaacactaaccccaactttgatcatcttctttttcccggaaacaataccaacaatcttatcaacaacaataataatgggttttcgactgtgggatttaacagtgacaatgagttttcgacattgggatttggaacaggtgggggaggtcctcatgattttgttgttgatcagactcatgatcaactcgcagcttctttgaatcggctgagcatatccaatagtggcagttcaggcaatcaaagaatacccaacaactatatgcctagctctacaaccctaggcaatggtgggttcagtactctagagcaggaatatttggagaggttgaaccaatatgctttcttaatggctgagcagtacatgaggcgttcgattcccactactgcaaacaatggaatactcaatccccatagttggaatcggaatagcaccactagtggtaggagcactagtcaatcgatttatggcgatcaatttggatatggttttaaccaaattaggtctagttctagttctagttctcagcggaatggggttagcaggggatcaaggtttgctaacggggctggaagacagcgtttcgggcaagaaaaaaggagccaaggcctgaatttgatgtccaccaaagatcaaaggcttggcaatgggtctgcacggcggcatataccaagttattactctgtccctttggaagagttgaggggccaaattgcttttgtggccaaagatcatgttggatgtcgatttttacaaaagaagattgaggagggtaagatggaagagattgaaatgatttttaatgaggttatgaaggagggtcatgatcatttgcgcgagctaatggtagatcaatttgggactgaatttattcagaaacttgtggaggggactaacagggacggatggaccaaaatgcttgatttgtacataattggactaaaaatacctcgtgtaacagcagacattttaggtcagcttcaggggtattttgttaatctgtcgatgaacaagcatggaagtaatgtagtcgagaaaaccttgaaagaggctggagaagaacatgccaatatgattattaacgagatgattaacagtcctgagtttctgaatgttcttcaaaatccttatgggaattatgttgctcagtctgctgttgcagtatccaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF zf-CCCH

Protein Analysis

414

Amino Acids

46.26

Weight (kDa)

6.61

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004233)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30780 FvH4_5g30780
malus_domestica	MD05G1093500.v1.1
prunus_persica	Prupe.8G138200_v2.0.a1 Prupe.8G138200_v2.0.a1
pyrus_communis	pycom15g06920
rosa_chinensis	RchiOBHm_Chr6g0254321 RchiOBHm_Chr6g0254351
rosa_laevigata	RLG00000014133 RLG00000014918 RLG00000014919 RLG00000014923 RLG00000014926
rosa_multiflora	Rmu_sc0006565.1_g000002 Rmu_sc0007138.1_g000009 Rmu_sc0027609.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210870 Rroxscaffold_7G00210910 Rroxscaffold_7G00210930
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG068500 Rh6AG068800 Rh6AG068900 Rh6BG061200 Rh6CG061000 Rh6CG061100 Rh6CG061500 Rh6DG058000 Rh6DG058300 Rh6DG058400 Rh6DG058700
rosa_wichuraiana	Rw6G006000 Rw6G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	909
AciI	CCGC	2 cut(s)	601, 733
AclWI	GGATC	3 cut(s)	5, 18, 628
AcoI	YGGCCR	1 cut(s)	795
AcsI	RAATTY	2 cut(s)	685, 938
AcuI	CTGAAG	1 cut(s)	1037
AfaI	GTAC	3 cut(s)	373, 434, 1001
AfiI	CCNNNNNNNGG	1 cut(s)	489
AgsI	TTSAA	6 cut(s)	38, 274, 403, 863, 1117, 1193
AhlI	ACTAGT	2 cut(s)	509, 524
AluBI	AGCT	4 cut(s)	266, 342, 913, 1051
AluI	AGCT	4 cut(s)	266, 342, 913, 1051
Alw21I	GWGCWC	1 cut(s)	524
AlwI	GGATC	3 cut(s)	5, 18, 628
AoxI	GGCC	3 cut(s)	679, 778, 795
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	2 cut(s)	685, 938
Asp700I	GAANNNNTTC	1 cut(s)	942
AspA2I	CCTAGG	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	909
AspS9I	GGNCC	3 cut(s)	221, 778, 981
AsuC2I	CCSGG	1 cut(s)	111
AvaII	GGWCC	2 cut(s)	221, 981
AvrII	CCTAGG	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	797
BamHI	GGATCC	1 cut(s)	10
BauI	CACGAG	1 cut(s)	1023
BbsI	GAAGAC	1 cut(s)	652
Bbv12I	GWGCWC	1 cut(s)	524
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	3 cut(s)	78, 844, 972
BceAI	ACGGC	1 cut(s)	746
BclI	TGATCA	4 cut(s)	94, 241, 253, 898
BcnI	CCSGG	1 cut(s)	111
BcuI	ACTAGT	2 cut(s)	509, 524
BfaI	CTAG	8 cut(s)	339, 353, 377, 510, 525, 579, 585, 591
BisI	GCNGC	2 cut(s)	264, 734
BlnI	CCTAGG	1 cut(s)	352
BlpI	GCTNAGC	2 cut(s)	281, 426
BlsI	GCNGC	2 cut(s)	265, 735
BmcAI	AGTACT	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	2 cut(s)	221, 981
BmgT120I	GGNCC	3 cut(s)	221, 778, 981
BmiI	GGNNCC	3 cut(s)	12, 674, 779
BmrFI	CCNGG	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	652
BpmI	CTGGAG	1 cut(s)	1146
Bpu1102I	GCTNAGC	2 cut(s)	281, 426
BpuMI	CCSGG	1 cut(s)	111
Bsa29I	ATCGAT	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	352, 676
BsaXI	ACNNNNNCTCC	2 cut(s)	511, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse3DI	GCAATG	2 cut(s)	364, 724
BseCI	ATCGAT	1 cut(s)	533
BseDI	CCNNGG	2 cut(s)	352, 676
BseGI	GGATG	2 cut(s)	818, 983
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseMI	GCAATG	2 cut(s)	364, 724
BseMII	CTCAG	5 cut(s)	272, 417, 611, 1164, 1232
BseRI	GAGGAG	1 cut(s)	854
BseXI	GCAGC	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	711
Bsh1236I	CGCG	1 cut(s)	909
BshFI	GGCC	3 cut(s)	681, 780, 797
BshVI	ATCGAT	1 cut(s)	533
BsiHKAI	GWGCWC	1 cut(s)	524
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	4 cut(s)	743, 946, 976, 986
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmFI	GGGAC	4 cut(s)	743, 946, 976, 986
BsnI	GGCC	3 cut(s)	681, 780, 797
Bsp1286I	GDGCHC	1 cut(s)	524
Bsp1407I	TGTACA	1 cut(s)	999
Bsp1720I	GCTNAGC	2 cut(s)	281, 426
BspACI	CCGC	2 cut(s)	601, 733
BspANI	GGCC	3 cut(s)	681, 780, 797
BspCNI	CTCAG	5 cut(s)	273, 418, 610, 1165, 1231
BspDI	ATCGAT	1 cut(s)	533
BspFNI	CGCG	1 cut(s)	909
BspHI	TCATGA	3 cut(s)	226, 250, 895
BspLI	GGNNCC	3 cut(s)	12, 674, 779
BspPI	GGATC	3 cut(s)	5, 18, 628
BsrDI	GCAATG	2 cut(s)	364, 724
BsrGI	TGTACA	1 cut(s)	999
BssECI	CCNNGG	2 cut(s)	352, 676
BssSI	CACGAG	1 cut(s)	1023
BssT1I	CCWWGG	2 cut(s)	352, 676
Bst2BI	CACGAG	1 cut(s)	1023
Bst4CI	ACNGT	3 cut(s)	163, 176, 1169
Bst6I	CTCTTC	2 cut(s)	762, 849
BstAUI	TGTACA	1 cut(s)	999
BstC8I	GCNNGC	1 cut(s)	911
BstDEI	CTNAG	5 cut(s)	281, 426, 597, 1173, 1218
BstF5I	GGATG	2 cut(s)	818, 983
BstFNI	CGCG	1 cut(s)	909
BstHHI	GCGC	1 cut(s)	909
BstMWI	GCNNNNNNNGC	5 cut(s)	306, 638, 658, 794, 1223
BstNSI	RCATGY	1 cut(s)	1139
BstSCI	CCNGG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	909
BstV1I	GCAGC	1 cut(s)	275
BstV2I	GAAGAC	1 cut(s)	652
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
Bsu15I	ATCGAT	1 cut(s)	533
BsuRI	GGCC	3 cut(s)	681, 780, 797
BsuTUI	ATCGAT	1 cut(s)	533
BtsCI	GGATG	2 cut(s)	818, 983
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	911
CciI	TCATGA	3 cut(s)	226, 250, 895
CfoI	GCGC	1 cut(s)	909
Cfr13I	GGNCC	3 cut(s)	221, 778, 981
ClaI	ATCGAT	1 cut(s)	533
Csp6I	GTAC	3 cut(s)	372, 433, 1000
CspCI	CAANNNNNGTGG	2 cut(s)	33, 68
CviAII	CATG	8 cut(s)	16, 227, 251, 436, 806, 896, 1088, 1136
CviQI	GTAC	3 cut(s)	372, 433, 1000
DdeI	CTNAG	5 cut(s)	281, 426, 597, 1173, 1218
EaeI	YGGCCR	1 cut(s)	795
Eam1104I	CTCTTC	2 cut(s)	762, 849
EarI	CTCTTC	2 cut(s)	762, 849
Eco130I	CCWWGG	2 cut(s)	352, 676
Eco147I	AGGCCT	1 cut(s)	681
Eco47I	GGWCC	2 cut(s)	221, 981
Eco57I	CTGAAG	1 cut(s)	1037
EcoO109I	RGGNCCY	1 cut(s)	221
EcoT14I	CCWWGG	2 cut(s)	352, 676
ErhI	CCWWGG	2 cut(s)	352, 676
FaeI	CATG	8 cut(s)	19, 230, 254, 439, 809, 899, 1091, 1139
FaqI	GGGAC	4 cut(s)	743, 946, 976, 986
FatI	CATG	8 cut(s)	15, 226, 250, 435, 805, 895, 1087, 1135
FbaI	TGATCA	4 cut(s)	94, 241, 253, 898
Fnu4HI	GCNGC	2 cut(s)	264, 734
FokI	GGATG	2 cut(s)	825, 990
Fsp4HI	GCNGC	2 cut(s)	264, 734
FspBI	CTAG	8 cut(s)	339, 353, 377, 510, 525, 579, 585, 591
GlaI	GCGC	1 cut(s)	908
GluI	GCNGC	2 cut(s)	264, 734
GsuI	CTGGAG	1 cut(s)	1146
HaeIII	GGCC	3 cut(s)	681, 780, 797
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	909
Hin1II	CATG	8 cut(s)	19, 230, 254, 439, 809, 899, 1091, 1139
Hin6I	GCGC	1 cut(s)	907
HinP1I	GCGC	1 cut(s)	907
HinfI	GANTC	4 cut(s)	247, 274, 448, 493
HpaII	CCGG	1 cut(s)	111
Hpy166II	GTNNAC	1 cut(s)	696
Hpy188I	TCNGA	4 cut(s)	246, 498, 948, 1182
Hpy188III	TCNNGA	6 cut(s)	227, 251, 377, 896, 1105, 1172
Hpy8I	GTNNAC	1 cut(s)	696
HpyAV	CCTTC	1 cut(s)	880
HpyCH4III	ACNGT	3 cut(s)	163, 176, 1169
HpyCH4V	TGCA	4 cut(s)	55, 461, 728, 1232
HpyF10VI	GCNNNNNNNGC	5 cut(s)	306, 638, 658, 794, 1223
HpyF3I	CTNAG	5 cut(s)	281, 426, 597, 1173, 1218
Hsp92II	CATG	8 cut(s)	19, 230, 254, 439, 809, 899, 1091, 1139
HspAI	GCGC	1 cut(s)	907
Ksp22I	TGATCA	4 cut(s)	94, 241, 253, 898
LmnI	GCTCC	2 cut(s)	519, 672
Lsp1109I	GCAGC	1 cut(s)	275
MaeI	CTAG	8 cut(s)	339, 353, 377, 510, 525, 579, 585, 591
MaeIII	GTNAC	2 cut(s)	176, 1027
MboII	GAAGA	8 cut(s)	26, 92, 657, 779, 844, 866, 1142, 1181
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	524
MlsI	TGGCCA	1 cut(s)	797
MluCI	AATT	8 cut(s)	548, 570, 685, 783, 926, 938, 1005, 1207
MluNI	TGGCCA	1 cut(s)	797
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	2 cut(s)	470, 790
Mox20I	TGGCCA	1 cut(s)	797
MroXI	GAANNNNTTC	1 cut(s)	942
MscI	TGGCCA	1 cut(s)	797
MseI	TTAA	7 cut(s)	171, 419, 564, 873, 1068, 1152, 1164
Msp20I	TGGCCA	1 cut(s)	797
MspA1I	CMGCKG	1 cut(s)	601
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	909
MwoI	GCNNNNNNNGC	5 cut(s)	306, 638, 658, 794, 1223
NciI	CCSGG	1 cut(s)	111
NlaIII	CATG	8 cut(s)	19, 230, 254, 439, 809, 899, 1091, 1139
NlaIV	GGNNCC	3 cut(s)	12, 674, 779
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	1139
PagI	TCATGA	3 cut(s)	226, 250, 895
PceI	AGGCCT	1 cut(s)	681
PdmI	GAANNNNTTC	1 cut(s)	942
PfeI	GAWTC	3 cut(s)	274, 448, 493
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	265, 735
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	221
PspN4I	GGNNCC	3 cut(s)	12, 674, 779
PspPI	GGNCC	3 cut(s)	221, 778, 981
PspPPI	RGGWCCY	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	3 cut(s)	373, 434, 1001
RsaNI	GTAC	3 cut(s)	372, 433, 1000
SaqAI	TTAA	7 cut(s)	171, 419, 564, 873, 1068, 1152, 1164
SatI	GCNGC	2 cut(s)	264, 734
Sau96I	GGNCC	3 cut(s)	221, 778, 981
ScaI	AGTACT	1 cut(s)	373
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	524
SinI	GGWCC	2 cut(s)	221, 981
SpeI	ACTAGT	2 cut(s)	509, 524
Sse9I	AATT	8 cut(s)	548, 570, 685, 783, 926, 938, 1005, 1207
SseBI	AGGCCT	1 cut(s)	681
SsiI	CCGC	2 cut(s)	601, 733
SspI	AATATT	1 cut(s)	389
SspMI	CTAG	8 cut(s)	339, 353, 377, 510, 525, 579, 585, 591
StuI	AGGCCT	1 cut(s)	681
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	2 cut(s)	352, 676
TaaI	ACNGT	3 cut(s)	163, 176, 1169
TaqI	TCGA	7 cut(s)	158, 191, 446, 533, 817, 1076, 1104
TasI	AATT	8 cut(s)	548, 570, 685, 783, 926, 938, 1005, 1207
TatI	WGTACW	3 cut(s)	371, 432, 999
TauI	GCSGC	1 cut(s)	736
TfiI	GAWTC	3 cut(s)	274, 448, 493
Tru1I	TTAA	7 cut(s)	171, 419, 564, 873, 1068, 1152, 1164
Tru9I	TTAA	7 cut(s)	171, 419, 564, 873, 1068, 1152, 1164
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	899, 1094
TspGWI	ACGGA	1 cut(s)	990
TspRI	CASTG	1 cut(s)	181
VpaK11BI	GGWCC	2 cut(s)	221, 981
XapI	RAATTY	2 cut(s)	685, 938
XbaI	TCTAGA	1 cut(s)	376
XceI	RCATGY	1 cut(s)	1139
XmaJI	CCTAGG	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	942
XspI	CTAG	8 cut(s)	339, 353, 377, 510, 525, 579, 585, 591
ZrmI	AGTACT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.