Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004233

Physical Location & Seq

Genomic Coordinates Forward (+)

59472090 .. 59473061

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014918

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAAAGGAAGAGAGAAGGTGGGAGAAGTCCTCATGATTTTGTTGCTGATTATACTCATGATCAACTCGCATCTTCTTTGAATCGGCTGAGCATATCCAATAATGGCAGTTCAGGCAATCAAAGAATACCCAACAACTATATGCCTAGCTCTACAATCCTAGGCAATGGTGGGTTCAGTAATCTAGAGCAGGAATATTTGGAGAGGTTGAACCAATATGCTTTCTTAATGGATGAGCAGTACATGAGGCGTTTGAATCCCACTACTGCTAATAATGAAATACTCAATCCCCATAGTTGGAATCAGAATAGCACCAGTAGTAGTAGGAGCACTAGTCAATCGATTTATGGGGATCAATTTGGATTTGGTTTTAACCAAATTAAGTCTAGTTCTAGTTCTCAGCGGAATGGGGTTAGCAGGGGATCAAGGTTTGCTAATGGGGCTGGAAGACAGCGTTTCGGGCAAGAAGAAAGGAGCCAAGACCTGAATTTGATGTCCACCAAAGATCAAAGGCATGGTCTGCACAACAGCATATACCAAGTTATTACTCAGTCCCTTTGGAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF zf-CCCH

Protein Analysis

190

Amino Acids

21.4

Weight (kDa)

9.56

Isoelectric Point (pI)

60.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004233)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30780 FvH4_5g30780
malus_domestica	MD05G1093500.v1.1
prunus_persica	Prupe.8G138200_v2.0.a1 Prupe.8G138200_v2.0.a1
pyrus_communis	pycom15g06920
rosa_chinensis	RchiOBHm_Chr6g0254321 RchiOBHm_Chr6g0254351
rosa_laevigata	RLG00000014133 RLG00000014918 RLG00000014919 RLG00000014923 RLG00000014926
rosa_multiflora	Rmu_sc0006565.1_g000002 Rmu_sc0007138.1_g000009 Rmu_sc0027609.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210870 Rroxscaffold_7G00210910 Rroxscaffold_7G00210930
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG068500 Rh6AG068800 Rh6AG068900 Rh6BG061200 Rh6CG061000 Rh6CG061100 Rh6CG061500 Rh6DG058000 Rh6DG058300 Rh6DG058400 Rh6DG058700
rosa_wichuraiana	Rw6G006000 Rw6G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	403
AclWI	GGATC	2 cut(s)	360, 430
AcsI	RAATTY	1 cut(s)	487
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	3 cut(s)	82, 211, 256
AhlI	ACTAGT	1 cut(s)	332
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Alw21I	GWGCWC	1 cut(s)	332
AlwI	GGATC	2 cut(s)	360, 430
ApoI	RAATTY	1 cut(s)	487
ArsI	GACNNNNNNTTYG	2 cut(s)	502, 534
AspA2I	CCTAGG	1 cut(s)	160
AvrII	CCTAGG	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	454
Bbv12I	GWGCWC	1 cut(s)	332
BclI	TGATCA	1 cut(s)	61
BcuI	ACTAGT	1 cut(s)	332
BfaI	CTAG	6 cut(s)	147, 161, 185, 333, 387, 393
BlnI	CCTAGG	1 cut(s)	160
BlpI	GCTNAGC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	476
BmsI	GCATC	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	454
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
Bpu1102I	GCTNAGC	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	172
BseCI	ATCGAT	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	3 cut(s)	80, 413, 563
BseNI	ACTGG	1 cut(s)	315
BsgI	GTGCAG	1 cut(s)	506
BshVI	ATCGAT	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	538
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	4 cut(s)	61, 352, 422, 505
Bsp1720I	GCTNAGC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	403
BspCNI	CTCAG	3 cut(s)	81, 412, 562
BspDI	ATCGAT	1 cut(s)	341
BspHI	TCATGA	2 cut(s)	34, 58
BspLI	GGNNCC	1 cut(s)	476
BspPI	GGATC	2 cut(s)	360, 430
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	4 cut(s)	61, 352, 422, 505
BssT1I	CCWWGG	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	5, 557
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstDEI	CTNAG	3 cut(s)	89, 399, 549
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	4 cut(s)	64, 355, 425, 508
BstMBI	GATC	4 cut(s)	61, 352, 422, 505
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 440, 460, 520
BstV2I	GAAGAC	1 cut(s)	454
Bsu15I	ATCGAT	1 cut(s)	341
BsuTUI	ATCGAT	1 cut(s)	341
BtsCI	GGATG	1 cut(s)	238
CciI	TCATGA	2 cut(s)	34, 58
ClaI	ATCGAT	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	4 cut(s)	35, 59, 244, 515
CviJI	RGCY	4 cut(s)	88, 150, 443, 477
CviKI_1	RGCY	4 cut(s)	88, 150, 443, 477
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	3 cut(s)	89, 399, 549
DpnI	GATC	4 cut(s)	63, 354, 424, 507
DpnII	GATC	4 cut(s)	61, 352, 422, 505
Eam1104I	CTCTTC	2 cut(s)	5, 557
EarI	CTCTTC	2 cut(s)	5, 557
Eco130I	CCWWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	4 cut(s)	38, 62, 247, 518
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	4 cut(s)	34, 58, 243, 514
FbaI	TGATCA	1 cut(s)	61
FokI	GGATG	1 cut(s)	245
FspBI	CTAG	6 cut(s)	147, 161, 185, 333, 387, 393
Hin1II	CATG	4 cut(s)	38, 62, 247, 518
HinfI	GANTC	3 cut(s)	82, 256, 301
Hpy166II	GTNNAC	1 cut(s)	498
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	3 cut(s)	35, 59, 185
Hpy8I	GTNNAC	1 cut(s)	498
HpyAV	CCTTC	1 cut(s)	11
HpyCH4V	TGCA	1 cut(s)	523
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 440, 460, 520
HpyF3I	CTNAG	3 cut(s)	89, 399, 549
Hsp92II	CATG	4 cut(s)	38, 62, 247, 518
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	4 cut(s)	61, 352, 422, 505
LmnI	GCTCC	2 cut(s)	327, 474
LpnPI	CCDG	6 cut(s)	99, 176, 328, 403, 429, 497
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	6 cut(s)	147, 161, 185, 333, 387, 393
MalI	GATC	4 cut(s)	63, 354, 424, 507
MboI	GATC	4 cut(s)	61, 352, 422, 505
MboII	GAAGA	4 cut(s)	22, 66, 459, 479
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	3 cut(s)	356, 378, 487
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	3 cut(s)	42, 198, 240
MseI	TTAA	3 cut(s)	227, 372, 381
MspA1I	CMGCKG	1 cut(s)	403
MwoI	GCNNNNNNNGC	4 cut(s)	114, 440, 460, 520
NdeII	GATC	4 cut(s)	61, 352, 422, 505
NlaIII	CATG	4 cut(s)	38, 62, 247, 518
NlaIV	GGNNCC	1 cut(s)	476
PagI	TCATGA	2 cut(s)	34, 58
PfeI	GAWTC	3 cut(s)	82, 256, 301
PspN4I	GGNNCC	1 cut(s)	476
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SaqAI	TTAA	3 cut(s)	227, 372, 381
Sau3AI	GATC	4 cut(s)	61, 352, 422, 505
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	5 cut(s)	22, 152, 209, 431, 486
SfaNI	GCATC	1 cut(s)	80
SpeI	ACTAGT	1 cut(s)	332
Sse9I	AATT	3 cut(s)	356, 378, 487
SsiI	CCGC	1 cut(s)	403
SspI	AATATT	1 cut(s)	197
SspMI	CTAG	6 cut(s)	147, 161, 185, 333, 387, 393
StyI	CCWWGG	1 cut(s)	160
TaqI	TCGA	1 cut(s)	341
TasI	AATT	3 cut(s)	356, 378, 487
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	3 cut(s)	82, 256, 301
Tru1I	TTAA	3 cut(s)	227, 372, 381
Tru9I	TTAA	3 cut(s)	227, 372, 381
TspDTI	ATGAA	1 cut(s)	291
XapI	RAATTY	1 cut(s)	487
XbaI	TCTAGA	1 cut(s)	184
XmaJI	CCTAGG	1 cut(s)	160
XspI	CTAG	6 cut(s)	147, 161, 185, 333, 387, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.