Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004233

Physical Location & Seq

Genomic Coordinates Reverse (-)

9400601 .. 9403911

Gene Structure 3311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22815

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTCCACCAAAGATCAAAGGCTTGGCAATGGGTCTGCACGGCGGCACATACCAAGTTATTACTCTGTCCCTTTGGAAGAGTTGAGGGGCCAAATTGCTTTTGTGGCCAAAGATCATGTTGGATGTCGATTTTTACAAAAGAAGATTGAGGAGGGTAAGATGGAAGAGATTGAAATGATTTTTAATGAGGTTATGAAGGAGGGTCATGATCATTTGCGCGAGCTAATGGTAGATCAATTTGGGACTGAATTTATTCAAAAACTTGTGGAGGGGACTAACAGAGACGGATGGACCAAAATGCTTGATTTGGTGATGAGTGATGAGAGGAAACTCAAGGATATGTGCACTGACCAGCATGGAAGTCGTGCCATGCAGAAGTTGCTGGAGCGGGTTGAAACCCGAGAGCAACAGTCCTCGTTTATGCGGGTTCTGAAGCGAATCACAATTCCGCTGAGCAAAACCCAGCCCGGTTATTATGTGATTCAAGTTTGCTTGAAAAATTTCTCTCTTGACTGCACCAAGGGTGTTCTGGAATTAGTGCTAGATAACTGCCTTGCATTAGCAAAAGACAAATTTGGGTGTTGCTTAGTGCAAAGCAGTGTGCATTATGCATATACTGAAGCTAAGGAGCGTCTTCTGGCTGACATAACTGAGCATGCTCGAGTCCTCTCCGAAGATCCTTACGGGAACTATGTTGTGCAGTACATAATTGGACTAAAAATACCTCGTGTAACAGCAGACATTTTAGGTCAGCTTCAAGGGTATTTTGTTAATCTGTCGATGAACAAGCATGGAAGTAATGTAGTCGAGAAAACCCTGAAAGAGGCTGGAGAAGAACATGCCAATACGATTATTAATGAGATGATTAACAGTCCTGAGTTTCTGAATGTTCTTCAAAATCCTTATGGGAATTATGTTGCTCAGTCTGCTCTTGCAGTATCCAAGGGATCTGTTCACAATGCTCTTGTTAACCTCATTCGGAGCAATTACCCTCATCTGCACAGCCATCTGTATGGGAAAAGGGTGCTCGACAAAACCAGAGGAGGCAGACATCGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF zf-CCCH

Protein Analysis

353

Amino Acids

40.2

Weight (kDa)

8.34

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUF	PF00806	34 - 65	4.2e-08	Pumilio-family RNA binding repeat
PUF	PF00806	183 - 216	3e-06	Pumilio-family RNA binding repeat
PUF	PF00806	255 - 289	1e-07	Pumilio-family RNA binding repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004233)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30780 FvH4_5g30780
malus_domestica	MD05G1093500.v1.1
prunus_persica	Prupe.8G138200_v2.0.a1 Prupe.8G138200_v2.0.a1
pyrus_communis	pycom15g06920
rosa_chinensis	RchiOBHm_Chr6g0254321 RchiOBHm_Chr6g0254351
rosa_laevigata	RLG00000014133 RLG00000014918 RLG00000014919 RLG00000014923 RLG00000014926
rosa_multiflora	Rmu_sc0006565.1_g000002 Rmu_sc0007138.1_g000009 Rmu_sc0027609.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210870 Rroxscaffold_7G00210910 Rroxscaffold_7G00210930
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG068500 Rh6AG068800 Rh6AG068900 Rh6BG061200 Rh6CG061000 Rh6CG061100 Rh6CG061500 Rh6DG058000 Rh6DG058300 Rh6DG058400 Rh6DG058700
rosa_wichuraiana	Rw6G006000 Rw6G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	388
AccII	CGCG	1 cut(s)	219
AciI	CCGC	4 cut(s)	43, 388, 424, 449
AclWI	GGATC	2 cut(s)	671, 955
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	3 cut(s)	248, 499, 572
AcuI	CTGAAG	2 cut(s)	452, 639
AfaI	GTAC	1 cut(s)	704
AfiI	CCNNNNNNNGG	1 cut(s)	823
AgsI	TTSAA	7 cut(s)	173, 257, 395, 485, 496, 758, 896
AluBI	AGCT	3 cut(s)	223, 623, 754
AluI	AGCT	3 cut(s)	223, 623, 754
Alw21I	GWGCWC	2 cut(s)	347, 1029
Alw26I	GTCTC	1 cut(s)	276
Alw44I	GTGCAC	1 cut(s)	343
AlwI	GGATC	2 cut(s)	671, 955
Ama87I	CYCGRG	2 cut(s)	399, 660
AoxI	GGCC	2 cut(s)	88, 105
ApaLI	GTGCAC	1 cut(s)	343
ApoI	RAATTY	3 cut(s)	248, 499, 572
AseI	ATTAAT	1 cut(s)	855
Asp700I	GAANNNNTTC	2 cut(s)	252, 500
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	88, 291
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	1 cut(s)	322
AvaI	CYCGRG	2 cut(s)	399, 660
AvaII	GGWCC	1 cut(s)	291
BaeGI	GKGCMC	1 cut(s)	347
BalI	TGGCCA	1 cut(s)	107
BauI	CACGAG	1 cut(s)	726
BbsI	GAAGAC	1 cut(s)	626
Bbv12I	GWGCWC	2 cut(s)	347, 1029
BccI	CCATC	3 cut(s)	154, 282, 1014
BceAI	ACGGC	1 cut(s)	56
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciVI	GTATCC	1 cut(s)	949
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	1 cut(s)	542
BfuI	GTATCC	1 cut(s)	949
BisI	GCNGC	1 cut(s)	44
BlpI	GCTNAGC	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	468
Bme18I	GGWCC	1 cut(s)	291
BmeT110I	CYCGRG	2 cut(s)	399, 660
BmgT120I	GGNCC	2 cut(s)	88, 291
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	468
BpiI	GAAGAC	1 cut(s)	626
BpmI	CTGGAG	2 cut(s)	404, 849
Bpu10I	CCTNAGC	1 cut(s)	624
Bpu1102I	GCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	519, 942
Bsc4I	CCNNNNNNNGG	1 cut(s)	823
Bse3DI	GCAATG	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	519, 942
BseGI	GGATG	2 cut(s)	128, 293
BseLI	CCNNNNNNNGG	1 cut(s)	823
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	4 cut(s)	443, 642, 867, 935
BseRI	GAGGAG	2 cut(s)	164, 1056
BseSI	GKGCMC	1 cut(s)	347
BseYI	CCCAGC	1 cut(s)	462
BsgI	GTGCAG	4 cut(s)	21, 499, 719, 983
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	90, 107
BsiHKAI	GWGCWC	2 cut(s)	347, 1029
BsiHKCI	CYCGRG	2 cut(s)	399, 660
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	3 cut(s)	53, 256, 286
BslI	CCNNNNNNNGG	1 cut(s)	823
BsmAI	GTCTC	1 cut(s)	276
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	3 cut(s)	53, 256, 286
BsnI	GGCC	2 cut(s)	90, 107
BsoBI	CYCGRG	2 cut(s)	399, 660
Bsp1286I	GDGCHC	2 cut(s)	347, 1029
Bsp143I	GATC	6 cut(s)	13, 112, 208, 232, 676, 947
Bsp1720I	GCTNAGC	1 cut(s)	452
BspACI	CCGC	4 cut(s)	43, 388, 424, 449
BspANI	GGCC	2 cut(s)	90, 107
BspCNI	CTCAG	4 cut(s)	444, 643, 868, 934
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	671, 955
BsrBI	CCGCTC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	34
BssECI	CCNNGG	2 cut(s)	519, 942
BssMI	GATC	6 cut(s)	13, 112, 208, 232, 676, 947
BssSI	CACGAG	1 cut(s)	726
BssT1I	CCWWGG	2 cut(s)	519, 942
Bst2BI	CACGAG	1 cut(s)	726
Bst4CI	ACNGT	2 cut(s)	411, 872
Bst6I	CTCTTC	2 cut(s)	72, 159
BstAPI	GCANNNNNTGC	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	221, 657
BstDEI	CTNAG	6 cut(s)	452, 586, 624, 651, 876, 921
BstENI	CCTNNNNNAGG	1 cut(s)	821
BstF5I	GGATG	2 cut(s)	128, 293
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	6 cut(s)	16, 115, 211, 235, 679, 950
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	6 cut(s)	13, 112, 208, 232, 676, 947
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 379, 926
BstNSI	RCATGY	2 cut(s)	659, 842
BstSCI	CCNGG	1 cut(s)	466
BstSLI	GKGCMC	1 cut(s)	347
BstUI	CGCG	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	626
BstX2I	RGATCY	2 cut(s)	676, 947
BstXI	CCANNNNNNTGG	1 cut(s)	1013
BstYI	RGATCY	2 cut(s)	676, 947
BsuI	GTATCC	1 cut(s)	949
BsuRI	GGCC	2 cut(s)	90, 107
BtsCI	GGATG	2 cut(s)	128, 293
BtsI	GCAGTG	1 cut(s)	604
BtsIMutI	CAGTG	2 cut(s)	345, 604
Cac8I	GCNNGC	2 cut(s)	221, 657
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	2 cut(s)	88, 291
CseI	GACGC	1 cut(s)	620
Csp6I	GTAC	1 cut(s)	703
CviAII	CATG	7 cut(s)	116, 206, 356, 370, 656, 791, 839
CviQI	GTAC	1 cut(s)	703
DdeI	CTNAG	6 cut(s)	452, 586, 624, 651, 876, 921
DpnI	GATC	6 cut(s)	15, 114, 210, 234, 678, 949
DpnII	GATC	6 cut(s)	13, 112, 208, 232, 676, 947
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	2 cut(s)	72, 159
EarI	CTCTTC	2 cut(s)	72, 159
Eco130I	CCWWGG	2 cut(s)	519, 942
Eco47I	GGWCC	1 cut(s)	291
Eco57I	CTGAAG	2 cut(s)	452, 639
Eco88I	CYCGRG	2 cut(s)	399, 660
EcoNI	CCTNNNNNAGG	1 cut(s)	821
EcoT14I	CCWWGG	2 cut(s)	519, 942
EcoT22I	ATGCAT	1 cut(s)	613
ErhI	CCWWGG	2 cut(s)	519, 942
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	7 cut(s)	119, 209, 359, 373, 659, 794, 842
FaqI	GGGAC	3 cut(s)	53, 256, 286
FatI	CATG	7 cut(s)	115, 205, 355, 369, 655, 790, 838
FauI	CCCGC	2 cut(s)	381, 417
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	2 cut(s)	135, 300
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	542
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	1 cut(s)	44
GsaI	CCCAGC	1 cut(s)	466
GsuI	CTGGAG	2 cut(s)	404, 849
HaeIII	GGCC	2 cut(s)	90, 107
HapII	CCGG	1 cut(s)	468
HgaI	GACGC	1 cut(s)	620
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	7 cut(s)	119, 209, 359, 373, 659, 794, 842
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HinfI	GANTC	3 cut(s)	438, 481, 663
HpaI	GTTAAC	1 cut(s)	970
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	4 cut(s)	6, 345, 955, 970
Hpy188I	TCNGA	4 cut(s)	432, 673, 885, 981
Hpy188III	TCNNGA	5 cut(s)	206, 509, 530, 808, 875
Hpy8I	GTNNAC	4 cut(s)	6, 345, 955, 970
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	2 cut(s)	411, 872
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 379, 926
HpyF3I	CTNAG	6 cut(s)	452, 586, 624, 651, 876, 921
Hsp92II	CATG	7 cut(s)	119, 209, 359, 373, 659, 794, 842
HspAI	GCGC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	208
KspAI	GTTAAC	1 cut(s)	970
Kzo9I	GATC	6 cut(s)	13, 112, 208, 232, 676, 947
LmnI	GCTCC	3 cut(s)	385, 628, 981
MaeI	CTAG	1 cut(s)	542
MaeIII	GTNAC	1 cut(s)	730
MalI	GATC	6 cut(s)	15, 114, 210, 234, 678, 949
MbiI	CCGCTC	1 cut(s)	388
MboI	GATC	6 cut(s)	13, 112, 208, 232, 676, 947
MboII	GAAGA	7 cut(s)	89, 154, 176, 626, 686, 845, 884
MflI	RGATCY	2 cut(s)	676, 947
MhlI	GDGCHC	2 cut(s)	347, 1029
MlsI	TGGCCA	1 cut(s)	107
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	672
MmeI	TCCRAC	1 cut(s)	100
Mox20I	TGGCCA	1 cut(s)	107
Mph1103I	ATGCAT	1 cut(s)	613
MroXI	GAANNNNTTC	2 cut(s)	252, 500
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	5 cut(s)	183, 771, 855, 867, 969
MslI	CAYNNNNRTG	1 cut(s)	1011
Msp20I	TGGCCA	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	451
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	1 cut(s)	468
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	104, 379, 926
NciI	CCSGG	1 cut(s)	468
NdeII	GATC	6 cut(s)	13, 112, 208, 232, 676, 947
NlaIII	CATG	7 cut(s)	119, 209, 359, 373, 659, 794, 842
NlaIV	GGNNCC	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	2 cut(s)	659, 842
PaeI	GCATGC	1 cut(s)	659
PaeR7I	CTCGAG	1 cut(s)	660
PagI	TCATGA	1 cut(s)	205
PdmI	GAANNNNTTC	2 cut(s)	252, 500
PfeI	GAWTC	2 cut(s)	438, 481
PkrI	GCNGC	1 cut(s)	45
PleI	GAGTC	1 cut(s)	671
PpsI	GAGTC	1 cut(s)	671
PshBI	ATTAAT	1 cut(s)	855
PspFI	CCCAGC	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	2 cut(s)	88, 291
PspXI	VCTCGAGB	1 cut(s)	660
PsuI	RGATCY	2 cut(s)	676, 947
RsaI	GTAC	1 cut(s)	704
RsaNI	GTAC	1 cut(s)	703
RseI	CAYNNNNRTG	1 cut(s)	1011
SaqAI	TTAA	5 cut(s)	183, 771, 855, 867, 969
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	6 cut(s)	13, 112, 208, 232, 676, 947
Sau96I	GGNCC	2 cut(s)	88, 291
SchI	GAGTC	1 cut(s)	672
ScrFI	CCNGG	1 cut(s)	468
SduI	GDGCHC	2 cut(s)	347, 1029
SetI	ASST	7 cut(s)	192, 225, 625, 727, 751, 756, 975
Sfr274I	CTCGAG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	291
SlaI	CTCGAG	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	1011
SmlI	CTYRAG	2 cut(s)	332, 660
SmoI	CTYRAG	2 cut(s)	332, 660
SphI	GCATGC	1 cut(s)	659
SsiI	CCGC	4 cut(s)	43, 388, 424, 449
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	466
StyI	CCWWGG	2 cut(s)	519, 942
TaaI	ACNGT	2 cut(s)	411, 872
TaqI	TCGA	5 cut(s)	127, 661, 779, 807, 1029
TatI	WGTACW	1 cut(s)	702
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	438, 481
Tru1I	TTAA	5 cut(s)	183, 771, 855, 867, 969
Tru9I	TTAA	5 cut(s)	183, 771, 855, 867, 969
TscAI	CASTG	2 cut(s)	352, 604
TspDTI	ATGAA	2 cut(s)	209, 797
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	2 cut(s)	352, 604
VneI	GTGCAC	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	291
VspI	ATTAAT	1 cut(s)	855
XagI	CCTNNNNNAGG	1 cut(s)	821
XapI	RAATTY	3 cut(s)	248, 499, 572
XceI	RCATGY	2 cut(s)	659, 842
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XhoI	CTCGAG	1 cut(s)	660
XmnI	GAANNNNTTC	2 cut(s)	252, 500
XspI	CTAG	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.