Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004233

Physical Location & Seq

Genomic Coordinates Reverse (-)

4232531 .. 4233529

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g06920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGATTGGGAAGGACAAAAGTGGCTGTTGTGTGCTACAAAAGTGCGTTGAGCACTCTAGTGGTGAAAATAGAGAACGCCTGGTTAATGCTATCATAGGGAAAGCAACAGTACTTGCAGTAGATCGCTACGGAAACTACGTGGTGCAACATTTACTGGGTTTGAGGATCCCGCGAATCACACAAAACCTTTTGAGACAACTTCAAGGCAGTTATATTTCTATGTCGTTGAATAAGTACGGTAGTTGCGTTGTGGAGAAATGCTTGTCTGAGTCAAGCGAAGAACAATCTTCACAGATTATATTTGAGTTGGTTACCAACCCAAATGTGTCAATGCTTCTTGTTCACCAGTATGGGAACTTTGTCATCCAGACAGCACTCGAGGTTTCTAAGGGTATCTACCATGAAGCTCTACTAAATCTGGTTGGTTTATACTCCGACTTCTTGCGTGGCAATTCTTATGGAAGAAAGGTACTAGCTCGGCGTGACAGGTGCCTGCGGCATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF

Protein Analysis

169

Amino Acids

18.9

Weight (kDa)

9.2

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUF	PF00806	3 - 32	2.7e-11	Pumilio-family RNA binding repeat
PUF	PF00806	72 - 103	1.8e-09	Pumilio-family RNA binding repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004233)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30780 FvH4_5g30780
malus_domestica	MD05G1093500.v1.1
prunus_persica	Prupe.8G138200_v2.0.a1 Prupe.8G138200_v2.0.a1
pyrus_communis	pycom15g06920
rosa_chinensis	RchiOBHm_Chr6g0254321 RchiOBHm_Chr6g0254351
rosa_laevigata	RLG00000014133 RLG00000014918 RLG00000014919 RLG00000014923 RLG00000014926
rosa_multiflora	Rmu_sc0006565.1_g000002 Rmu_sc0007138.1_g000009 Rmu_sc0027609.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210870 Rroxscaffold_7G00210910 Rroxscaffold_7G00210930
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG068500 Rh6AG068800 Rh6AG068900 Rh6BG061200 Rh6CG061000 Rh6CG061100 Rh6CG061500 Rh6DG058000 Rh6DG058300 Rh6DG058400 Rh6DG058700
rosa_wichuraiana	Rw6G006000 Rw6G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	489
AccII	CGCG	1 cut(s)	172
AciI	CCGC	2 cut(s)	170, 496
AclWI	GGATC	2 cut(s)	160, 173
AfaI	GTAC	3 cut(s)	111, 236, 471
AgsI	TTSAA	2 cut(s)	203, 229
AjnI	CCWGG	1 cut(s)	78
AleI	CACNNNNGTG	1 cut(s)	57
AluBI	AGCT	2 cut(s)	407, 476
AluI	AGCT	2 cut(s)	407, 476
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	2 cut(s)	160, 173
Ama87I	CYCGRG	1 cut(s)	377
AsuHPI	GGTGA	2 cut(s)	74, 335
AvaI	CYCGRG	1 cut(s)	377
BamHI	GGATCC	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	2 cut(s)	57, 473
BisI	GCNGC	1 cut(s)	497
BlsI	GCNGC	1 cut(s)	498
BmcAI	AGTACT	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	377
BmiI	GGNNCC	2 cut(s)	167, 491
BmrFI	CCNGG	1 cut(s)	80
BmrI	ACTGGG	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	139
Bse1I	ACTGG	2 cut(s)	159, 346
BseBI	CCWGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	2 cut(s)	159, 346
Bsh1236I	CGCG	1 cut(s)	172
BshNI	GGYRCC	1 cut(s)	489
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	377
BsmAI	GTCTC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	121, 165
BspACI	CCGC	2 cut(s)	170, 496
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	167, 491
BspPI	GGATC	2 cut(s)	160, 173
BspT107I	GGYRCC	1 cut(s)	489
BsrI	ACTGG	2 cut(s)	159, 346
BssMI	GATC	2 cut(s)	121, 165
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	2 cut(s)	109, 239
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	494
BstDEI	CTNAG	2 cut(s)	267, 387
BstEII	GGTNACC	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	363
BstFNI	CGCG	1 cut(s)	172
BstKTI	GATC	2 cut(s)	124, 168
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	2 cut(s)	121, 165
BstNI	CCWGG	1 cut(s)	80
BstPI	GGTNACC	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	78
BstUI	CGCG	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	494
Csp6I	GTAC	3 cut(s)	110, 235, 470
CviAII	CATG	1 cut(s)	401
CviJI	RGCY	3 cut(s)	24, 407, 476
CviKI_1	RGCY	3 cut(s)	24, 407, 476
CviQI	GTAC	3 cut(s)	110, 235, 470
DdeI	CTNAG	2 cut(s)	267, 387
DpnI	GATC	2 cut(s)	123, 167
DpnII	GATC	2 cut(s)	121, 165
Eco88I	CYCGRG	1 cut(s)	377
Eco91I	GGTNACC	1 cut(s)	310
EcoO65I	GGTNACC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	404
FaiI	YATR	9 cut(s)	95, 213, 221, 299, 351, 402, 430, 459, 501
FatI	CATG	1 cut(s)	400
FauI	CCCGC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	497
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	497
FspBI	CTAG	2 cut(s)	57, 473
GluI	GCNGC	1 cut(s)	497
Hin1II	CATG	1 cut(s)	404
HinfI	GANTC	2 cut(s)	174, 269
HphI	GGTGA	2 cut(s)	74, 335
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	2 cut(s)	268, 436
Hpy188III	TCNNGA	1 cut(s)	367
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	2 cut(s)	109, 239
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	116, 145
HpyF3I	CTNAG	2 cut(s)	267, 387
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	404
Kzo9I	GATC	2 cut(s)	121, 165
LpnPI	CCDG	7 cut(s)	65, 92, 140, 359, 380, 404, 472
MaeI	CTAG	2 cut(s)	57, 473
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	310, 482
MalI	GATC	2 cut(s)	123, 167
MboI	GATC	2 cut(s)	121, 165
MboII	GAAGA	3 cut(s)	279, 290, 474
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	1 cut(s)	451
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	2 cut(s)	156, 373
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	57, 348
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	172
NdeII	GATC	2 cut(s)	121, 165
NlaIII	CATG	1 cut(s)	404
NlaIV	GGNNCC	2 cut(s)	167, 491
NmeAIII	GCCGAG	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	482
OliI	CACNNNNGTG	1 cut(s)	57
PaeR7I	CTCGAG	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 243
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	498
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Ppu21I	YACGTR	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	78
PspEI	GGTNACC	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	167, 491
PspXI	VCTCGAGB	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	3 cut(s)	111, 236, 471
RsaNI	GTAC	3 cut(s)	110, 235, 470
RseI	CAYNNNNRTG	2 cut(s)	57, 348
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	1 cut(s)	497
Sau3AI	GATC	2 cut(s)	121, 165
ScaI	AGTACT	1 cut(s)	111
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	7 cut(s)	141, 189, 384, 409, 471, 478, 491
Sfr274I	CTCGAG	1 cut(s)	377
SlaI	CTCGAG	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	57, 348
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	1 cut(s)	451
SsiI	CCGC	2 cut(s)	170, 496
SspMI	CTAG	2 cut(s)	57, 473
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	109, 239
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	378
TasI	AATT	1 cut(s)	451
TatI	WGTACW	1 cut(s)	109
TauI	GCSGC	1 cut(s)	499
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	1 cut(s)	417
TspGWI	ACGGA	1 cut(s)	144
XhoI	CTCGAG	1 cut(s)	377
XspI	CTAG	2 cut(s)	57, 473
ZrmI	AGTACT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.