Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004233

Physical Location & Seq

Genomic Coordinates Reverse (-)

9970268 .. 9974030

Gene Structure 3763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG068900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCAAAGAGACATTCACACTGGTCCTCATGAACTTCCCTGGTTACCACTCCCTCAACCTGAATCCCTAAATTTCTTGAGCTTTTTGAGCCTCTTTGATGCCAAGATCCTCAAGTTAATATTGCCCGAGGATTTTAGGGCAGTTACACAGATACCAATGCAGAGGAAGAGAGAAGGTATGGAAAGGAAGAGAGAAGGTGAGGATTATGCAGACATTCATCAGTGGTTTAATACTAGAGGCTTGCCGGAAAATCAGAACCGTCAGAATTGCCGTATCGATACCACTAATTCCTTCCCCGAATACCACATCTCTCAAAACACTCCCCCTCCGTTAGCGGAATACCACCTTAATCAAAACCCTCCACCTCCCCCTCCGTTTGAAAATCAGATGTATTGGGATCCCATGTTGCCCAATCTCGTTCTTCAAAACCCACCAATCTTGCAAAACCCACCCTACCATCAAAACACTAATCCCAACTTTGATCATCTTCTTTTTCTCGAAAACAGTACCAACAATCTTATCAACAACAATAATAATGGTTTTCAACAGTGGGATTTAACAGTAATAATGGGTTTTCGACATTGGGATTTGGAACAGGTGGGGGAGGTCCTCATGATTTTGCTGCTGATCAGACTCATGATCAACTCGCAGCTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

25.85

Weight (kDa)

5.28

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004233)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30780 FvH4_5g30780
malus_domestica	MD05G1093500.v1.1
prunus_persica	Prupe.8G138200_v2.0.a1 Prupe.8G138200_v2.0.a1
pyrus_communis	pycom15g06920
rosa_chinensis	RchiOBHm_Chr6g0254321 RchiOBHm_Chr6g0254351
rosa_laevigata	RLG00000014133 RLG00000014918 RLG00000014919 RLG00000014923 RLG00000014926
rosa_multiflora	Rmu_sc0006565.1_g000002 Rmu_sc0007138.1_g000009 Rmu_sc0027609.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210870 Rroxscaffold_7G00210910 Rroxscaffold_7G00210930
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG068500 Rh6AG068800 Rh6AG068900 Rh6BG061200 Rh6CG061000 Rh6CG061100 Rh6CG061500 Rh6DG058000 Rh6DG058300 Rh6DG058400 Rh6DG058700
rosa_wichuraiana	Rw6G006000 Rw6G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	3 cut(s)	100, 392, 405
AcsI	RAATTY	1 cut(s)	70
AfaI	GTAC	1 cut(s)	508
AgsI	TTSAA	3 cut(s)	380, 425, 545
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	2 cut(s)	81, 652
AluI	AGCT	2 cut(s)	81, 652
Alw26I	GTCTC	1 cut(s)	3
AlwI	GGATC	3 cut(s)	100, 392, 405
Ama87I	CYCGRG	1 cut(s)	125
ApeKI	GCWGC	2 cut(s)	622, 649
ApoI	RAATTY	1 cut(s)	70
AspS9I	GGNCC	2 cut(s)	23, 607
AsuHPI	GGTGA	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	23, 607
BamHI	GGATCC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	609
BccI	CCATC	1 cut(s)	465
BceAI	ACGGC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	40
BclI	TGATCA	3 cut(s)	481, 627, 639
BcoDI	GTCTC	1 cut(s)	3
BfaI	CTAG	1 cut(s)	234
BisI	GCNGC	2 cut(s)	623, 650
BlsI	GCNGC	2 cut(s)	624, 651
Bme1390I	CCNGG	1 cut(s)	40
Bme18I	GGWCC	2 cut(s)	23, 607
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	2 cut(s)	23, 607
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	88
BpuEI	CTTGAG	2 cut(s)	95, 97
Bsa29I	ATCGAT	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	38, 126
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bse1I	ACTGG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	40
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	38, 126
BseNI	ACTGG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	609
BshVI	ATCGAT	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	3
BsoBI	CYCGRG	1 cut(s)	125
Bsp143I	GATC	5 cut(s)	105, 397, 481, 627, 639
BspACI	CCGC	1 cut(s)	335
BspDI	ATCGAT	1 cut(s)	276
BspHI	TCATGA	3 cut(s)	28, 612, 636
BspLI	GGNNCC	1 cut(s)	399
BspPI	GGATC	3 cut(s)	100, 392, 405
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	38, 126
BssMI	GATC	5 cut(s)	105, 397, 481, 627, 639
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	4 cut(s)	260, 506, 549, 562
Bst6I	CTCTTC	2 cut(s)	161, 182
BstC8I	GCNNGC	1 cut(s)	242
BstEII	GGTNACC	1 cut(s)	42
BstKTI	GATC	5 cut(s)	108, 400, 484, 630, 642
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	5 cut(s)	105, 397, 481, 627, 639
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	40
BstPI	GGTNACC	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	609
BstX2I	RGATCY	2 cut(s)	105, 397
BstYI	RGATCY	2 cut(s)	105, 397
Bsu15I	ATCGAT	1 cut(s)	276
BsuTUI	ATCGAT	1 cut(s)	276
BtsIMutI	CAGTG	3 cut(s)	18, 227, 554
Cac8I	GCNNGC	1 cut(s)	242
CciI	TCATGA	3 cut(s)	28, 612, 636
Cfr13I	GGNCC	2 cut(s)	23, 607
ClaI	ATCGAT	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	507
CspCI	CAANNNNNGTGG	2 cut(s)	420, 455
CviAII	CATG	4 cut(s)	29, 403, 613, 637
CviJI	RGCY	4 cut(s)	81, 90, 240, 652
CviKI_1	RGCY	4 cut(s)	81, 90, 240, 652
CviQI	GTAC	1 cut(s)	507
DpnI	GATC	5 cut(s)	107, 399, 483, 629, 641
DpnII	GATC	5 cut(s)	105, 397, 481, 627, 639
Eam1104I	CTCTTC	2 cut(s)	161, 182
EarI	CTCTTC	2 cut(s)	161, 182
Eco47I	GGWCC	2 cut(s)	23, 607
Eco88I	CYCGRG	1 cut(s)	125
Eco91I	GGTNACC	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	607
EcoO65I	GGTNACC	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	38
FaeI	CATG	4 cut(s)	32, 406, 616, 640
FaiI	YATR	6 cut(s)	30, 179, 207, 404, 614, 638
FatI	CATG	4 cut(s)	28, 402, 612, 636
FbaI	TGATCA	3 cut(s)	481, 627, 639
Fnu4HI	GCNGC	2 cut(s)	623, 650
Fsp4HI	GCNGC	2 cut(s)	623, 650
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	2 cut(s)	623, 650
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	4 cut(s)	32, 406, 616, 640
HinfI	GANTC	2 cut(s)	62, 633
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	209
Hpy188I	TCNGA	4 cut(s)	255, 264, 387, 632
Hpy188III	TCNNGA	5 cut(s)	29, 76, 497, 613, 637
HpyAV	CCTTC	3 cut(s)	167, 188, 301
HpyCH4III	ACNGT	4 cut(s)	260, 506, 549, 562
HpyCH4V	TGCA	4 cut(s)	4, 160, 209, 442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	32, 406, 616, 640
Ksp22I	TGATCA	3 cut(s)	481, 627, 639
Kzo9I	GATC	5 cut(s)	105, 397, 481, 627, 639
LpnPI	CCDG	6 cut(s)	6, 25, 52, 72, 258, 581
Lsp1109I	GCAGC	1 cut(s)	609
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	2 cut(s)	42, 142
MalI	GATC	5 cut(s)	107, 399, 483, 629, 641
MboI	GATC	5 cut(s)	105, 397, 481, 627, 639
MboII	GAAGA	4 cut(s)	178, 199, 413, 479
MflI	RGATCY	2 cut(s)	105, 397
MluCI	AATT	3 cut(s)	70, 265, 286
MlyI	GAGTC	1 cut(s)	627
MseI	TTAA	5 cut(s)	116, 228, 348, 557, 658
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	87
NdeII	GATC	5 cut(s)	105, 397, 481, 627, 639
NlaIII	CATG	4 cut(s)	32, 406, 616, 640
NlaIV	GGNNCC	1 cut(s)	399
PagI	TCATGA	3 cut(s)	28, 612, 636
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	624, 651
PleI	GAGTC	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	627
PpuMI	RGGWCCY	1 cut(s)	607
Psp5II	RGGWCCY	1 cut(s)	607
Psp6I	CCWGG	1 cut(s)	38
PspEI	GGTNACC	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	2 cut(s)	23, 607
PspPPI	RGGWCCY	1 cut(s)	607
PsuI	RGATCY	2 cut(s)	105, 397
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
SaqAI	TTAA	5 cut(s)	116, 228, 348, 557, 658
SatI	GCNGC	2 cut(s)	623, 650
Sau3AI	GATC	5 cut(s)	105, 397, 481, 627, 639
Sau96I	GGNCC	2 cut(s)	23, 607
SchI	GAGTC	1 cut(s)	627
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	9 cut(s)	61, 83, 178, 199, 348, 367, 600, 609, 654
SfaNI	GCATC	1 cut(s)	88
SinI	GGWCC	2 cut(s)	23, 607
SmlI	CTYRAG	2 cut(s)	76, 110
SmoI	CTYRAG	2 cut(s)	76, 110
Sse9I	AATT	3 cut(s)	70, 265, 286
SsiI	CCGC	1 cut(s)	335
SspI	AATATT	1 cut(s)	120
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	4 cut(s)	260, 506, 549, 562
TaqI	TCGA	3 cut(s)	276, 498, 577
TasI	AATT	3 cut(s)	70, 265, 286
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	5 cut(s)	116, 228, 348, 557, 658
Tru9I	TTAA	5 cut(s)	116, 228, 348, 557, 658
TscAI	CASTG	3 cut(s)	25, 227, 554
TseI	GCWGC	2 cut(s)	622, 649
TspDTI	ATGAA	2 cut(s)	45, 206
TspGWI	ACGGA	2 cut(s)	318, 363
TspRI	CASTG	3 cut(s)	25, 227, 554
VpaK11BI	GGWCC	2 cut(s)	23, 607
XapI	RAATTY	1 cut(s)	70
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.