Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004233

Physical Location & Seq

Genomic Coordinates Forward (+)

59473136 .. 59476822

Gene Structure 3687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014919

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGAAGAGATTGAAATGATTTTTAATGAGGTTATGAAGGAGGGTCATGATCATTTGCGCGAGCTAATGGTAGATCAATTTGAGACTGAATTTGTTCAGAAACTTGTGGAGGGGACTAACAGGGACGGATGGACCAAAATGCTTGATTTGGTGATGAGTGATGGGAGGAAACTCAAGGATATGTGCACTGACCAAAATGGAAGTCGTGCCATGAAGAATTTGCTAGAGCGGGTTGAAACCCGAGAGCAACAATCCTCGTTTATGCGGGTTCTGAAGCGAATCACAATTCCGCTGAGTAAAACCCAGCGTGGTTATTATGTCATTCAAGTTGGCTTAAAAATTTTCTCTCATGATTGCACCAAGGGTGTTCTGGAATTAGTGCTAGATAACTGCCTTGCATTAGCAAAAGACAAATTTGGGTGTTACTTAGTGCAAAGCAGTGTGCATTATGCGTATACTGAAGCTAAGGAGCGTCATGTGGCTGACATAACTGAGCATGCTCGAGTCCTCTCCGAAGATCCTTACGGGTTTTACGTAATTGGACTAAAAATACCTCGTGTAACAACAGACATTTTAGGTCAGCTTCAGGGGTATTTTGTTAATCTGTCGATGATTAAGCATGGAAATAATATAGTTGAGAAAACCCTGAAAGAGGCTGGAGAAGAACATGCCAATATGAGTATTAACAAGATGATTAATAGTCCTGAGTTTCTGAATGTTCTTCAAAATCCTTATGGGAATTATGTTGCTCAGTCTGCTGTTGCAGTATCCAAGGGATCTGTTCACAATGCTCTTGTTAACCTCATTCGGAGCAATTACCCTTATCTGCACAGCCATCTGTATGGCAAAAGGGTGCTCGACAAAACTAGAGGAGGTAGGCATTGCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF zf-CCCH

Protein Analysis

297

Amino Acids

33.79

Weight (kDa)

7.7

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004233)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30780 FvH4_5g30780
malus_domestica	MD05G1093500.v1.1
prunus_persica	Prupe.8G138200_v2.0.a1 Prupe.8G138200_v2.0.a1
pyrus_communis	pycom15g06920
rosa_chinensis	RchiOBHm_Chr6g0254321 RchiOBHm_Chr6g0254351
rosa_laevigata	RLG00000014133 RLG00000014918 RLG00000014919 RLG00000014923 RLG00000014926
rosa_multiflora	Rmu_sc0006565.1_g000002 Rmu_sc0007138.1_g000009 Rmu_sc0027609.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210870 Rroxscaffold_7G00210910 Rroxscaffold_7G00210930
rosa_rugosa	Rorug05G0552000
rosa_samantha	Rh6AG068500 Rh6AG068800 Rh6AG068900 Rh6BG061200 Rh6CG061000 Rh6CG061100 Rh6CG061500 Rh6DG058000 Rh6DG058300 Rh6DG058400 Rh6DG058700
rosa_wichuraiana	Rw6G006000 Rw6G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	886
AccBSI	CCGCTC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	455
AccII	CGCG	1 cut(s)	60
AciI	CCGC	3 cut(s)	229, 265, 290
AclWI	GGATC	2 cut(s)	512, 784
AcsI	RAATTY	4 cut(s)	89, 217, 339, 413
AcuI	CTGAAG	3 cut(s)	293, 480, 569
AfiI	CCNNNNNNNGG	1 cut(s)	652
AgsI	TTSAA	4 cut(s)	14, 236, 326, 725
AluBI	AGCT	3 cut(s)	64, 464, 583
AluI	AGCT	3 cut(s)	64, 464, 583
Alw21I	GWGCWC	2 cut(s)	188, 858
Alw26I	GTCTC	1 cut(s)	77
Alw44I	GTGCAC	1 cut(s)	184
AlwI	GGATC	2 cut(s)	512, 784
Ama87I	CYCGRG	2 cut(s)	240, 501
ApaLI	GTGCAC	1 cut(s)	184
ApoI	RAATTY	4 cut(s)	89, 217, 339, 413
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
AseI	ATTAAT	1 cut(s)	696
Asp700I	GAANNNNTTC	1 cut(s)	93
AspLEI	GCGC	2 cut(s)	60, 887
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	163
AvaI	CYCGRG	2 cut(s)	240, 501
AvaII	GGWCC	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	188
BauI	CACGAG	1 cut(s)	555
Bbv12I	GWGCWC	2 cut(s)	188, 858
BccI	CCATC	3 cut(s)	123, 155, 843
BciVI	GTATCC	1 cut(s)	778
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	3 cut(s)	224, 383, 867
BfuI	GTATCC	1 cut(s)	778
Bme18I	GGWCC	1 cut(s)	132
BmeT110I	CYCGRG	2 cut(s)	240, 501
BmgT120I	GGNCC	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	158
BsaAI	YACGTR	1 cut(s)	535
BsaJI	CCNNGG	2 cut(s)	360, 771
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse3DI	GCAATG	1 cut(s)	880
BseDI	CCNNGG	2 cut(s)	360, 771
BseGI	GGATG	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMI	GCAATG	1 cut(s)	880
BseMII	CTCAG	4 cut(s)	284, 483, 696, 764
BseRI	GAGGAG	1 cut(s)	885
BseSI	GKGCMC	1 cut(s)	188
BseYI	CCCAGC	1 cut(s)	303
BsgI	GTGCAG	1 cut(s)	812
Bsh1236I	CGCG	1 cut(s)	60
BsiHKAI	GWGCWC	2 cut(s)	188, 858
BsiHKCI	CYCGRG	2 cut(s)	240, 501
BslFI	GGGAC	2 cut(s)	127, 137
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	2 cut(s)	127, 137
BsoBI	CYCGRG	2 cut(s)	240, 501
Bsp1286I	GDGCHC	2 cut(s)	188, 858
Bsp143I	GATC	4 cut(s)	49, 73, 517, 776
BspACI	CCGC	3 cut(s)	229, 265, 290
BspCNI	CTCAG	4 cut(s)	285, 484, 697, 763
BspFNI	CGCG	1 cut(s)	60
BspHI	TCATGA	2 cut(s)	46, 349
BspPI	GGATC	2 cut(s)	512, 784
BsrBI	CCGCTC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	880
BssECI	CCNNGG	2 cut(s)	360, 771
BssMI	GATC	4 cut(s)	49, 73, 517, 776
BssNAI	GTATAC	1 cut(s)	456
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	2 cut(s)	360, 771
Bst1107I	GTATAC	1 cut(s)	456
Bst2BI	CACGAG	1 cut(s)	555
BstBAI	YACGTR	1 cut(s)	535
BstC8I	GCNNGC	2 cut(s)	62, 498
BstDEI	CTNAG	6 cut(s)	293, 427, 465, 492, 705, 750
BstENI	CCTNNNNNAGG	1 cut(s)	650
BstF5I	GGATG	1 cut(s)	134
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	60, 887
BstKTI	GATC	4 cut(s)	52, 76, 520, 779
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	4 cut(s)	49, 73, 517, 776
BstMWI	GCNNNNNNNGC	1 cut(s)	755
BstNSI	RCATGY	2 cut(s)	500, 671
BstSLI	GKGCMC	1 cut(s)	188
BstSNI	TACGTA	1 cut(s)	535
BstUI	CGCG	1 cut(s)	60
BstX2I	RGATCY	2 cut(s)	517, 776
BstXI	CCANNNNNNTGG	1 cut(s)	842
BstYI	RGATCY	2 cut(s)	517, 776
BstZ17I	GTATAC	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	778
BtsCI	GGATG	1 cut(s)	134
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	2 cut(s)	186, 445
Cac8I	GCNNGC	2 cut(s)	62, 498
CciI	TCATGA	2 cut(s)	46, 349
CfoI	GCGC	2 cut(s)	60, 887
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	1 cut(s)	461
CviAII	CATG	7 cut(s)	47, 211, 350, 476, 497, 620, 668
CviJI	RGCY	7 cut(s)	64, 333, 464, 482, 583, 656, 834
CviKI_1	RGCY	7 cut(s)	64, 333, 464, 482, 583, 656, 834
DdeI	CTNAG	6 cut(s)	293, 427, 465, 492, 705, 750
DpnI	GATC	4 cut(s)	51, 75, 519, 778
DpnII	GATC	4 cut(s)	49, 73, 517, 776
Eco105I	TACGTA	1 cut(s)	535
Eco130I	CCWWGG	2 cut(s)	360, 771
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	3 cut(s)	293, 480, 569
Eco88I	CYCGRG	2 cut(s)	240, 501
EcoNI	CCTNNNNNAGG	1 cut(s)	650
EcoT14I	CCWWGG	2 cut(s)	360, 771
ErhI	CCWWGG	2 cut(s)	360, 771
FaeI	CATG	7 cut(s)	50, 214, 353, 479, 500, 623, 671
FaqI	GGGAC	2 cut(s)	127, 137
FatI	CATG	7 cut(s)	46, 210, 349, 475, 496, 619, 667
FauI	CCCGC	2 cut(s)	222, 258
FbaI	TGATCA	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	455
FokI	GGATG	1 cut(s)	141
FspBI	CTAG	3 cut(s)	224, 383, 867
FspI	TGCGCA	1 cut(s)	886
GlaI	GCGC	2 cut(s)	59, 886
GsaI	CCCAGC	1 cut(s)	307
GsuI	CTGGAG	1 cut(s)	678
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	2 cut(s)	60, 887
Hin1II	CATG	7 cut(s)	50, 214, 353, 479, 500, 623, 671
Hin6I	GCGC	2 cut(s)	58, 885
HinP1I	GCGC	2 cut(s)	58, 885
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HinfI	GANTC	2 cut(s)	279, 504
HpaI	GTTAAC	1 cut(s)	799
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	4 cut(s)	186, 456, 784, 799
Hpy188I	TCNGA	5 cut(s)	99, 273, 514, 714, 810
Hpy188III	TCNNGA	4 cut(s)	47, 350, 371, 704
Hpy8I	GTNNAC	4 cut(s)	186, 456, 784, 799
HpyAV	CCTTC	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	7 cut(s)	186, 357, 398, 433, 445, 764, 829
HpyF10VI	GCNNNNNNNGC	1 cut(s)	755
HpyF3I	CTNAG	6 cut(s)	293, 427, 465, 492, 705, 750
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	7 cut(s)	50, 214, 353, 479, 500, 623, 671
HspAI	GCGC	2 cut(s)	58, 885
Ksp22I	TGATCA	1 cut(s)	49
KspAI	GTTAAC	1 cut(s)	799
Kzo9I	GATC	4 cut(s)	49, 73, 517, 776
LmnI	GCTCC	2 cut(s)	469, 810
LpnPI	CCDG	7 cut(s)	106, 317, 356, 572, 642, 659, 717
MaeI	CTAG	3 cut(s)	224, 383, 867
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	2 cut(s)	422, 559
MalI	GATC	4 cut(s)	51, 75, 519, 778
MbiI	CCGCTC	1 cut(s)	229
MboI	GATC	4 cut(s)	49, 73, 517, 776
MboII	GAAGA	5 cut(s)	17, 226, 527, 674, 713
MflI	RGATCY	2 cut(s)	517, 776
MhlI	GDGCHC	2 cut(s)	188, 858
MlyI	GAGTC	1 cut(s)	513
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	7 cut(s)	24, 335, 600, 615, 684, 696, 798
MslI	CAYNNNNRTG	1 cut(s)	840
MspA1I	CMGCKG	1 cut(s)	292
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	755
NdeII	GATC	4 cut(s)	49, 73, 517, 776
NlaIII	CATG	7 cut(s)	50, 214, 353, 479, 500, 623, 671
NsbI	TGCGCA	1 cut(s)	886
NspI	RCATGY	2 cut(s)	500, 671
PaeI	GCATGC	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	501
PagI	TCATGA	2 cut(s)	46, 349
PcsI	WCGNNNNNNNCGW	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	279
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
Ppu21I	YACGTR	1 cut(s)	535
PshBI	ATTAAT	1 cut(s)	696
PspFI	CCCAGC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	132
PspXI	VCTCGAGB	1 cut(s)	501
PsuI	RGATCY	2 cut(s)	517, 776
RseI	CAYNNNNRTG	1 cut(s)	840
SaqAI	TTAA	7 cut(s)	24, 335, 600, 615, 684, 696, 798
Sau3AI	GATC	4 cut(s)	49, 73, 517, 776
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	188, 858
SetI	ASST	9 cut(s)	33, 66, 466, 537, 556, 580, 585, 804, 877
Sfr274I	CTCGAG	1 cut(s)	501
SinI	GGWCC	1 cut(s)	132
SlaI	CTCGAG	1 cut(s)	501
SmiMI	CAYNNNNRTG	1 cut(s)	840
SmlI	CTYRAG	2 cut(s)	173, 501
SmoI	CTYRAG	2 cut(s)	173, 501
SnaBI	TACGTA	1 cut(s)	535
SphI	GCATGC	1 cut(s)	500
SsiI	CCGC	3 cut(s)	229, 265, 290
SspMI	CTAG	3 cut(s)	224, 383, 867
StyI	CCWWGG	2 cut(s)	360, 771
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	3 cut(s)	502, 608, 858
TfiI	GAWTC	1 cut(s)	279
Tru1I	TTAA	7 cut(s)	24, 335, 600, 615, 684, 696, 798
Tru9I	TTAA	7 cut(s)	24, 335, 600, 615, 684, 696, 798
TscAI	CASTG	2 cut(s)	193, 445
TspDTI	ATGAA	2 cut(s)	50, 227
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	2 cut(s)	193, 445
VneI	GTGCAC	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	132
VspI	ATTAAT	1 cut(s)	696
XagI	CCTNNNNNAGG	1 cut(s)	650
XapI	RAATTY	4 cut(s)	89, 217, 339, 413
XceI	RCATGY	2 cut(s)	500, 671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	501
XmiI	GTMKAC	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	3 cut(s)	224, 383, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.