FvH4_6g09330

Transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
5544940 .. 5549694
4755 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09330.t6

Sequence Viewer

Length: 1266 bp
ATGGAGAGCATTTTGACAATGGTGGAGATGGGGAGTCAAGTAGGAAGCCAGTCGTTACTCAGTACAATCAAGATTGCAGTATTGCCAATAGCAAAGGTTTTTACGGTTTGTTCTTTGGGTCTTCTTATGGCTTCCAAGTATGTTAACATCTTGCCGGCTAATGGGAGGAAGCTCTTGAATGGGCTGGTTTTCTCGCTTTTGCTTCCGTGCTTGATATTCTCCCAGCTCGGACAAGCTATCACCTGGGAGAAAATGCTCGAGTGGTGGTTTATTCCTGCGAATGTAGTTCTTGGTAGTATATCAGGCTCAATTATAGGTTATATAACCGCATCCATTGTTCGTCCACCATACCCATACTTCAAGTTCACAATTGTACAGATTGGAATAGGAAACATTGGGAATGTGCCACTTGTTCTGATTGCCGCTCTATGTAGAGACACATCCAACCCTTTCGGTGACACATGTAGTACAAATGGGACTGCCTATATTTCGTTTGGCCAGTGGGTTGGTGCAATCATCCTTTACACTTACGTATTTCATATGTTGGCCCCTCCTCCAGAGGGTACCTTTGACATTGATGAGGAAACTCTCCCAATCAAGAGCCCTAGTGATGGAGACACGACTGGACAAGTTCCTTTGCTTACACATGACGAACAAGAAGAAGAGGAAGAGCAAAAACATGAAGAAGTTGTAGAAACCAACACAAATTCTTCAAAGAAATCTAAGATTATAGAGATCTTGATTTTTTTGTATGAGAAGTTGAACCTCAAACAACTTCTTCATCCCCCTATAATAGCTTCTGTCCTAGCCATGTTCCTTGGCGCAATACCATTCTTAAAAAAACAGATCTTTGAATCTGGCGGTCCACTTTTCTTCTTCACTGACAGCTGCACTATCCTTGGGGATGCCATGATTCCATGCATTCTTTTGGCATTAGGCGGCAACCTTATCAATGGCCCAGGGAGTTCCAAACTTGGTTTTCGAACAACAGCCGCTATTATTTTTGCACGGTTGGTCTTGGTCCCCCCGGCAGGACTTGGGATTGTAACGTTGGCCGATAAGCTTGGTTTCCTTCCTGATGGTGATAAGATGTTTCGTTTTGTCCTACTGCTCCAGCACACAATGCCAACATCTGTTCTTGCTGGTGCTGTTGCAAATTTAAGAGGCTGTGGAAGGGAGGCCGCCGCTGTCTTGTTCTGGGTTCATATATTTGCGGTGTTTTCCATGGCTGGGTGGATTGTTCTTTACCTCAACATACTATTTTAA

Protein Analysis

422

Amino Acids

45.73

Weight (kDa)

5.58

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 27 - 413 4.1e-95 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 563
AccB1I GGYRCC 1 cut(s) 563
AccBSI CCGCTC 1 cut(s) 425
AciI CCGC 8 cut(s) 327, 423, 861, 939, 993, 1182, 1185, 1214
AclI AACGTT 1 cut(s) 1049
AcoI YGGCCR 2 cut(s) 496, 1053
AcsI RAATTY 2 cut(s) 706, 1156
AfaI GTAC 4 cut(s) 64, 375, 469, 565
AfiI CCNNNNNNNGG 5 cut(s) 161, 560, 611, 1031, 1230
AflIII ACRYGT 1 cut(s) 461
AgsI TTSAA 5 cut(s) 178, 361, 714, 763, 854
AjnI CCWGG 2 cut(s) 242, 958
AluBI AGCT 6 cut(s) 172, 226, 236, 797, 888, 1063
AluI AGCT 6 cut(s) 172, 226, 236, 797, 888, 1063
Alw26I GTCTC 2 cut(s) 429, 609
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 5 cut(s) 496, 546, 955, 1053, 1179
ApeKI GCWGC 1 cut(s) 888
ApoI RAATTY 2 cut(s) 706, 1156
Asp718I GGTACC 1 cut(s) 563
AspLEI GCGC 1 cut(s) 824
AspS9I GGNCC 4 cut(s) 547, 863, 956, 1021
AsuC2I CCSGG 1 cut(s) 1028
AsuHPI GGTGA 3 cut(s) 232, 467, 1094
AsuII TTCGAA 1 cut(s) 982
AvaI CYCGRG 1 cut(s) 257
AvaII GGWCC 2 cut(s) 863, 1021
BalI TGGCCA 1 cut(s) 498
BanI GGYRCC 1 cut(s) 563
BanII GRGCYC 1 cut(s) 605
BbsI GAAGAC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 875
BccI CCATC 3 cut(s) 22, 605, 1073
BciT130I CCWGG 2 cut(s) 244, 960
BcnI CCSGG 1 cut(s) 1028
BcoDI GTCTC 2 cut(s) 429, 609
BfaI CTAG 2 cut(s) 606, 806
BglII AGATCT 2 cut(s) 735, 846
BisI GCNGC 6 cut(s) 423, 889, 940, 993, 1182, 1185
BlsI GCNGC 6 cut(s) 424, 890, 941, 994, 1183, 1186
Bme1390I CCNGG 3 cut(s) 244, 960, 1028
Bme18I GGWCC 2 cut(s) 863, 1021
BmeT110I CYCGRG 1 cut(s) 257
BmgT120I GGNCC 4 cut(s) 547, 863, 956, 1021
BmiI GGNNCC 3 cut(s) 549, 565, 1023
BmrFI CCNGG 3 cut(s) 244, 960, 1028
BmsI GCATC 2 cut(s) 338, 895
BpiI GAAGAC 1 cut(s) 113
BpmI CTGGAG 2 cut(s) 540, 1097
Bpu14I TTCGAA 1 cut(s) 982
BpuMI CCSGG 1 cut(s) 1028
BsaAI YACGTR 1 cut(s) 532
BsaJI CCNNGG 7 cut(s) 243, 817, 898, 958, 959, 1026, 1224
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 560, 611, 1031, 1230
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 3 cut(s) 49, 499, 628
BseBI CCWGG 2 cut(s) 244, 960
BseDI CCNNGG 7 cut(s) 243, 817, 898, 958, 959, 1026, 1224
BseGI GGATG 5 cut(s) 329, 440, 516, 781, 910
BseLI CCNNNNNNNGG 5 cut(s) 161, 560, 611, 1031, 1230
BseMII CTCAG 1 cut(s) 73
BseNI ACTGG 3 cut(s) 49, 499, 628
BseRI GAGGAG 1 cut(s) 543
BseXI GCAGC 1 cut(s) 875
BseYI CCCAGC 2 cut(s) 222, 1229
BsgI GTGCAG 1 cut(s) 874
BshFI GGCC 5 cut(s) 498, 548, 957, 1055, 1181
BshNI GGYRCC 1 cut(s) 563
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 2 cut(s) 155, 1028
BslFI GGGAC 2 cut(s) 490, 1007
BslI CCNNNNNNNGG 5 cut(s) 161, 560, 611, 1031, 1230
BsmAI GTCTC 2 cut(s) 429, 609
BsmFI GGGAC 2 cut(s) 490, 1007
BsmI GAATGC 1 cut(s) 921
BsnI GGCC 5 cut(s) 498, 548, 957, 1055, 1181
BsoBI CYCGRG 1 cut(s) 257
Bsp119I TTCGAA 1 cut(s) 982
Bsp1286I GDGCHC 1 cut(s) 605
Bsp1407I TGTACA 1 cut(s) 373
Bsp143I GATC 2 cut(s) 735, 846
Bsp19I CCATGG 1 cut(s) 1224
BspACI CCGC 8 cut(s) 327, 423, 861, 939, 993, 1182, 1185, 1214
BspANI GGCC 5 cut(s) 498, 548, 957, 1055, 1181
BspCNI CTCAG 1 cut(s) 72
BspLI GGNNCC 3 cut(s) 549, 565, 1023
BspQI GCTCTTC 1 cut(s) 663
BspT104I TTCGAA 1 cut(s) 982
BspT107I GGYRCC 1 cut(s) 563
BsrBI CCGCTC 1 cut(s) 425
BsrFI RCCGGY 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 373
BsrI ACTGG 3 cut(s) 49, 499, 628
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 7 cut(s) 243, 817, 898, 958, 959, 1026, 1224
BssMI GATC 2 cut(s) 735, 846
BssT1I CCWWGG 3 cut(s) 817, 898, 1224
Bst2UI CCWGG 2 cut(s) 244, 960
Bst4CI ACNGT 2 cut(s) 106, 1011
Bst6I CTCTTC 2 cut(s) 657, 663
BstAPI GCANNNNNTGC 1 cut(s) 1123
BstAUI TGTACA 1 cut(s) 373
BstBAI YACGTR 1 cut(s) 532
BstBI TTCGAA 1 cut(s) 982
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 59, 723
BstDSI CCRYGG 1 cut(s) 1224
BstF5I GGATG 5 cut(s) 329, 440, 516, 781, 910
BstHHI GCGC 1 cut(s) 824
BstKTI GATC 2 cut(s) 738, 849
BstMAI GTCTC 2 cut(s) 429, 609
BstMBI GATC 2 cut(s) 735, 846
BstMWI GCNNNNNNNGC 1 cut(s) 1123
BstNI CCWGG 2 cut(s) 244, 960
BstNSI RCATGY 1 cut(s) 465
BstSCI CCNGG 3 cut(s) 242, 958, 1026
BstSNI TACGTA 1 cut(s) 532
BstV1I GCAGC 1 cut(s) 875
BstV2I GAAGAC 1 cut(s) 113
BstX2I RGATCY 2 cut(s) 735, 846
BstXI CCANNNNNNTGG 1 cut(s) 506
BstYI RGATCY 2 cut(s) 735, 846
BsuRI GGCC 5 cut(s) 498, 548, 957, 1055, 1181
BtgI CCRYGG 1 cut(s) 1224
BtsCI GGATG 5 cut(s) 329, 440, 516, 781, 910
BtsIMutI CAGTG 2 cut(s) 506, 879
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 1 cut(s) 824
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 4 cut(s) 547, 863, 956, 1021
Csp6I GTAC 4 cut(s) 63, 374, 468, 564
CviAII CATG 7 cut(s) 462, 647, 680, 811, 910, 918, 1225
CviQI GTAC 4 cut(s) 63, 374, 468, 564
DdeI CTNAG 2 cut(s) 59, 723
DpnI GATC 2 cut(s) 737, 848
DpnII GATC 2 cut(s) 735, 846
EaeI YGGCCR 2 cut(s) 496, 1053
Eam1104I CTCTTC 2 cut(s) 657, 663
EarI CTCTTC 2 cut(s) 657, 663
Eco105I TACGTA 1 cut(s) 532
Eco130I CCWWGG 3 cut(s) 817, 898, 1224
Eco24I GRGCYC 1 cut(s) 605
Eco47I GGWCC 2 cut(s) 863, 1021
Eco88I CYCGRG 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 242, 958
EcoT14I CCWWGG 3 cut(s) 817, 898, 1224
EcoT22I ATGCAT 1 cut(s) 923
EcoT38I GRGCYC 1 cut(s) 605
ErhI CCWWGG 3 cut(s) 817, 898, 1224
FaeI CATG 7 cut(s) 465, 650, 683, 814, 913, 921, 1228
FaqI GGGAC 2 cut(s) 490, 1007
FatI CATG 7 cut(s) 461, 646, 679, 810, 909, 917, 1224
FauNDI CATATG 1 cut(s) 540
Fnu4HI GCNGC 6 cut(s) 423, 889, 940, 993, 1182, 1185
FokI GGATG 5 cut(s) 316, 427, 503, 768, 917
FriOI GRGCYC 1 cut(s) 605
Fsp4HI GCNGC 6 cut(s) 423, 889, 940, 993, 1182, 1185
FspBI CTAG 2 cut(s) 606, 806
GlaI GCGC 1 cut(s) 823
GluI GCNGC 6 cut(s) 423, 889, 940, 993, 1182, 1185
GsaI CCCAGC 2 cut(s) 226, 1233
GsuI CTGGAG 2 cut(s) 540, 1097
HaeIII GGCC 5 cut(s) 498, 548, 957, 1055, 1181
HapII CCGG 2 cut(s) 155, 1028
HhaI GCGC 1 cut(s) 824
Hin1II CATG 7 cut(s) 465, 650, 683, 814, 913, 921, 1228
Hin6I GCGC 1 cut(s) 822
HinP1I GCGC 1 cut(s) 822
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 1061
HinfI GANTC 3 cut(s) 34, 854, 913
HpaI GTTAAC 1 cut(s) 145
HpaII CCGG 2 cut(s) 155, 1028
HphI GGTGA 3 cut(s) 232, 467, 1094
Hpy166II GTNNAC 4 cut(s) 145, 344, 366, 866
Hpy188I TCNGA 2 cut(s) 230, 417
Hpy188III TCNNGA 6 cut(s) 70, 175, 557, 598, 739, 1076
Hpy8I GTNNAC 4 cut(s) 145, 344, 366, 866
HpyAV CCTTC 2 cut(s) 1082, 1167
HpyCH4III ACNGT 2 cut(s) 106, 1011
HpyCH4IV ACGT 2 cut(s) 531, 1049
HpyCH4V TGCA 6 cut(s) 77, 512, 891, 921, 1007, 1154
HpyF10VI GCNNNNNNNGC 1 cut(s) 1123
HpyF3I CTNAG 2 cut(s) 59, 723
HpySE526I ACGT 2 cut(s) 531, 1049
Hsp92II CATG 7 cut(s) 465, 650, 683, 814, 913, 921, 1228
HspAI GCGC 1 cut(s) 822
KpnI GGTACC 1 cut(s) 567
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
KspAI GTTAAC 1 cut(s) 145
Kzo9I GATC 2 cut(s) 735, 846
LguI GCTCTTC 1 cut(s) 663
LmnI GCTCC 1 cut(s) 1116
Lsp1109I GCAGC 1 cut(s) 875
LweI GCATC 2 cut(s) 338, 895
MaeI CTAG 2 cut(s) 606, 806
MaeII ACGT 2 cut(s) 531, 1049
MaeIII GTNAC 3 cut(s) 54, 455, 1045
MalI GATC 2 cut(s) 737, 848
MbiI CCGCTC 1 cut(s) 425
MboI GATC 2 cut(s) 735, 846
MboII GAAGA 9 cut(s) 113, 671, 674, 680, 695, 702, 770, 865, 868
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 2 cut(s) 735, 846
MhlI GDGCHC 1 cut(s) 605
MlsI TGGCCA 1 cut(s) 498
MluCI AATT 4 cut(s) 309, 369, 706, 1156
MluNI TGGCCA 1 cut(s) 498
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 468
Mox20I TGGCCA 1 cut(s) 498
Mph1103I ATGCAT 1 cut(s) 923
MroNI GCCGGC 1 cut(s) 154
MscI TGGCCA 1 cut(s) 498
MseI TTAA 4 cut(s) 144, 836, 1160, 1264
Msp20I TGGCCA 1 cut(s) 498
MspA1I CMGCKG 2 cut(s) 888, 1187
MspI CCGG 2 cut(s) 155, 1028
MspR9I CCNGG 3 cut(s) 244, 960, 1028
MunI CAATTG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 921
MvaI CCWGG 2 cut(s) 244, 960
MwoI GCNNNNNNNGC 1 cut(s) 1123
NaeI GCCGGC 1 cut(s) 156
NciI CCSGG 1 cut(s) 1028
NcoI CCATGG 1 cut(s) 1224
NdeI CATATG 1 cut(s) 540
NdeII GATC 2 cut(s) 735, 846
NgoMIV GCCGGC 1 cut(s) 154
NlaIII CATG 7 cut(s) 465, 650, 683, 814, 913, 921, 1228
NlaIV GGNNCC 3 cut(s) 549, 565, 1023
NmuCI GTSAC 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 923
NspI RCATGY 1 cut(s) 465
NspV TTCGAA 1 cut(s) 982
PaeR7I CTCGAG 1 cut(s) 257
PasI CCCWGGG 1 cut(s) 959
PciI ACATGT 1 cut(s) 461
PciSI GCTCTTC 1 cut(s) 663
PctI GAATGC 1 cut(s) 921
PdiI GCCGGC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 854, 913
PkrI GCNGC 6 cut(s) 424, 890, 941, 994, 1183, 1186
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
Ppu21I YACGTR 1 cut(s) 532
PscI ACATGT 1 cut(s) 461
Psp1406I AACGTT 1 cut(s) 1049
Psp6I CCWGG 2 cut(s) 242, 958
PspFI CCCAGC 2 cut(s) 222, 1229
PspGI CCWGG 2 cut(s) 242, 958
PspN4I GGNNCC 3 cut(s) 549, 565, 1023
PspPI GGNCC 4 cut(s) 547, 863, 956, 1021
PspXI VCTCGAGB 1 cut(s) 257
PsuI RGATCY 2 cut(s) 735, 846
PvuII CAGCTG 1 cut(s) 888
RsaI GTAC 4 cut(s) 64, 375, 469, 565
RsaNI GTAC 4 cut(s) 63, 374, 468, 564
SapI GCTCTTC 1 cut(s) 663
SaqAI TTAA 4 cut(s) 144, 836, 1160, 1264
SatI GCNGC 6 cut(s) 423, 889, 940, 993, 1182, 1185
Sau3AI GATC 2 cut(s) 735, 846
Sau96I GGNCC 4 cut(s) 547, 863, 956, 1021
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 3 cut(s) 244, 960, 1028
SduI GDGCHC 1 cut(s) 605
SfaNI GCATC 2 cut(s) 338, 895
Sfr274I CTCGAG 1 cut(s) 257
SfuI TTCGAA 1 cut(s) 982
SinI GGWCC 2 cut(s) 863, 1021
SlaI CTCGAG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SnaBI TACGTA 1 cut(s) 532
Sse9I AATT 4 cut(s) 309, 369, 706, 1156
SsiI CCGC 8 cut(s) 327, 423, 861, 939, 993, 1182, 1185, 1214
SspMI CTAG 2 cut(s) 606, 806
StyD4I CCNGG 3 cut(s) 242, 958, 1026
StyI CCWWGG 3 cut(s) 817, 898, 1224
TaaI ACNGT 2 cut(s) 106, 1011
TaiI ACGT 2 cut(s) 534, 1052
TaqI TCGA 2 cut(s) 258, 982
TasI AATT 4 cut(s) 309, 369, 706, 1156
TatI WGTACW 3 cut(s) 62, 373, 467
TauI GCSGC 5 cut(s) 425, 942, 995, 1184, 1187
TfiI GAWTC 2 cut(s) 854, 913
Tru1I TTAA 4 cut(s) 144, 836, 1160, 1264
Tru9I TTAA 4 cut(s) 144, 836, 1160, 1264
TscAI CASTG 2 cut(s) 506, 886
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 1 cut(s) 888
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 4 cut(s) 527, 696, 770, 1193
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 2 cut(s) 506, 886
VpaK11BI GGWCC 2 cut(s) 863, 1021
XapI RAATTY 2 cut(s) 706, 1156
XceI RCATGY 1 cut(s) 465
XhoI CTCGAG 1 cut(s) 257
XspI CTAG 2 cut(s) 606, 806
Zsp2I ATGCAT 1 cut(s) 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.