Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003304

Physical Location & Seq

Genomic Coordinates Forward (+)

8013493 .. 8031186

Gene Structure 17694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG100400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2634 bp

ATGGAGGAGGGTCTAGAGTTAGCAGTACTGGTGTGTTGGTCAGTTTTGTTGCTCGGTGTATTGAGCTTGTTGATGATATTTCTTAGCCAGATGTGGCTGAAGCCTGCAAGGATACGATCGGTGCTTTCGAAACAAGGCATCCGAGGGCCACGGCCTTCGTTTCTGGTTGGGAACGTTCCGGAGATGCAAAAGATTCAATCCAACACGACCAACATGATCACCCGGCAGAAACAACCATCTGATATCGATGGTCAACGTGTGCAGCACAATTGGGATTCCTCCATGTTTCCTTATCTTCAGCAATGGGCACGTGAGTATGGTGCGGTATTCTTATACTCCACAGGAGCCAAACAACACTTGTATGTGAGCGATCCTAAGTTGTTAAGGGAGCTGAAACTGCACAACTCCTTGGATTTGGGCAGACCAACATATCTGAGTAAGCCTCTAAAGCCATTGCTAGGTAACGGCCTTATTGTAGCTAACGGACATGAATGGGCTTACCAGAGGAAACTTATTGCCCCTGAATTCTTCCTTGACAAAGTTAAGGGCATGGTAGGTTTAATGGAGGAATCAACGATGGCACTACTCGAGACATGGGAGAGCCGAATTCTAGAAAGCGAGTCGAGCATTGTTGAGATGAGGATAGATCAGGATTTGAAGAAACTCTCAGCGGATATCATATCAAGAGCTTGTTTCGGCAGCTCATATTCCCAAGGCAACCAGATTTTTGCAAAGATTGCTTTCTTGCAAGACGCATTGTCGAAACCTAATTTGCTCTTTGGGTTTCTAAATTTCAGATTCTTTCGCACTGAGACTGACAAGAAGATAAGAAACATGAACAAAGAGGTGGATGCTATGTTACTCAAATTAGTGAAGGATCGTCGGGCTCAAAGCGAATCGGGTGGTGTATATGAGAAGGATCTATTAGAAATGATACTTGAAAGTGCTGCTAGAGATAGTACTGACATGCCTCATTATAGACATAAAACAGACCGTTTTATTCTGGACAATTGTAGAAATATCTACTTTGCAGGTTCTGAGACCACTGCTCTTACAGTTTCATGGACCTTGTTGCTTCTGTCATTACACCCGGAATGGCAGGAACGTATTCGTGCAGAGATCGTTGAGGTTTGCGGGGATCATGAACTCTACCATTGCTTGCAAGACATGGATACACTCCGCAAGTTCAAAACGCTGACTATGGTGATTCTAGAGAGCCTCCGTCTTTATGGACCGGGAGTCATATCAGCAAGAGAAGCTCGGACCAAAATGAAGTTGGGGGACCTTGATGTCCCAGAAGGCATCCACATGTGGGTCTTCTATCCGGCACTGCACCGTGACTCCAAAAATTGGGGTCCGGATGCTAATGAGTTTAAGCCGGAGAGGTTTGCAAATGGAGTGTCCGAATCATGCAAGTATCCCCAAGCATACATGCCATTTGGTTTCGGGACTCGATTGTGTATAGGTCAGACATTTGCCATGCTACAACTGAAGATAGTACTCTCTCTGATTTTATCCAAGTACTCATTCTCCCTTTCTCCAAACTATCGCCATTCTCCTGTTTATAAGATGTTATTGTTGCCTGAGCATGGAATCAGACTCATTGTTAGGCGTGTGCAGTGGTTTATTCCTGCGAATGTAGTTCTTGGTAGCATATCAGGCTCAATCATAGGTTATATAACCGCATCCATCGTCCGTCCACCATACCCATACTTCAAGTTCACAATTGTACAAATTGGAATTGGAAACATTGGGAATGTGCCACTTGTTCTGATTGCAGCTTTATGTAGAGACTCATCCAACCCTTTTGGTGACTCGACCACATGTAGCACAAATGGGACTGCCTATATTTCCTTTGGCCAGTGGGTTGGTGCAATCATCCTTTACACATATGTATTTAATATGTTGGCCCCCCCTCCGGAGGGCACCTTTGACATTGATGAGGAAACTCTCCCAATCAAGAGCCCTACAGATGGGGAGACACTTGGACAAGTTCCTTTGCTTACACATGAAGACCAACAAGAAGAAGAGGAAGAGCAAAAAAATGAAGAGCAAGTTGTAGAAATCAACCCAAATTCTTCAAAGAAATCCATGATTACAGAGTTGTTGATGTTTTTGTATGAGAAATTGAAGCTCAAACAACTTCTTCAACCCCCTATAATAGCTTCTGTCCTAGCCATGGTACTTGGAGCAATACCATTTTTAAAGAAACAGATCTTCGAATCTGGTGGTCCATTTTTCTTCTTCACTGACAGCTGCACTATCCTTGGGGAAGCCATGATTCCATGCATTCTTTTGGCATTAGGCGGCAACCTTATCAATGGCCCAGGCAGTTCCAAACTTGGTCTACGAACAACTGCTGCTATTATATTTTCACGGTTGGTCTTGGTCCCCCCGGTAGGACTTGGGATTGTAACATTGGCTGATAAGCTCGGTTTCCTCCCTGATGGTGATAAGTTGTTTCGTTTTGTCCTACTGCTCCAGCACACAATGCCAACATCTGTTCTTGCTGGTGCTGTTGCAAATTTAAGAGGCTGTGGAAGAGAGGCTGCTGCTGTCTTGTTCTGGGTTCATATATTTGCGGTGTTCTCCATGGCTGGGTGGATTGTTCTGTATCTCAACATACTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

877

Amino Acids

98.62

Weight (kDa)

7.56

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	93 - 534	1.4e-78	Cytochrome P450
Mem_trans	PF03547	541 - 869	1.6e-70	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01990
fragaria_vesca	FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330
malus_domestica	MD04G1178500.v1.1 MD12G1194000.v1.1
prunus_persica	Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1
pyrus_communis	pycom04g15750 pycom12g18020
rosa_chinensis	RchiOBHm_Chr3g0459731 RchiOBHm_Chr4g0399931
rosa_laevigata	RLG00000021505 RLG00000025062 RLG00000028723
rosa_multiflora	Rmu_sc0000240.1_g000034
rosa_roxburghii	Rroxscaffold_3G00242630 Rroxscaffold_6G00420020
rosa_rugosa	Rorug03G0037900 Rorug03G0037900 Rorug03G0038000.1 Rorug03G0038100
rosa_samantha	Rh1AG210400 Rh3AG096400 Rh3BG099100 Rh3CG101000 Rh3DG100400
rosa_wichuraiana	Rw4G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1566
AasI	GACNNNNNNGTC	1 cut(s)	1289
Acc36I	ACCTGC	1 cut(s)	1022
AccB1I	GGYRCC	1 cut(s)	1925
AccB7I	CCANNNNNTGG	1 cut(s)	1350
AccI	GTMKAC	1 cut(s)	2347
AccIII	TCCGGA	3 cut(s)	178, 1357, 1918
AciI	CCGC	7 cut(s)	323, 671, 1134, 1180, 1683, 2307, 2582
AclI	AACGTT	1 cut(s)	174
AclWI	GGATC	4 cut(s)	365, 885, 927, 1146
AcoI	YGGCCR	1 cut(s)	1858
AcsI	RAATTY	5 cut(s)	524, 606, 790, 2074, 2524
AcuI	CTGAAG	3 cut(s)	119, 281, 1511
AcvI	CACGTG	1 cut(s)	311
AfaI	GTAC	6 cut(s)	27, 961, 1500, 1523, 1731, 2184
AflIII	ACRYGT	3 cut(s)	256, 1308, 1823
AgsI	TTSAA	8 cut(s)	197, 658, 941, 1189, 1717, 2082, 2131, 2150
AhdI	GACNNNNNGTC	2 cut(s)	757, 1238
AjnI	CCWGG	1 cut(s)	2326
AjuI	GAANNNNNNNTTGG	2 cut(s)	1511, 1543
Alw26I	GTCTC	5 cut(s)	584, 806, 1034, 1785, 1973
AlwI	GGATC	4 cut(s)	365, 885, 927, 1146
AlwNI	CAGNNNCTG	1 cut(s)	1037
Ama87I	CYCGRG	1 cut(s)	587
Aor13HI	TCCGGA	3 cut(s)	178, 1357, 1918
AoxI	GGCC	6 cut(s)	146, 152, 466, 1858, 1908, 2323
ApeKI	GCWGC	8 cut(s)	262, 699, 947, 1778, 2256, 2360, 2549, 2552
ApoI	RAATTY	5 cut(s)	524, 606, 790, 2074, 2524
ArsI	GACNNNNNNTTYG	2 cut(s)	1385, 1417
Asp700I	GAANNNNTTC	1 cut(s)	1107
AsuC2I	CCSGG	4 cut(s)	223, 1091, 1236, 2396
AsuHPI	GGTGA	4 cut(s)	211, 1216, 1823, 2462
AsuII	TTCGAA	2 cut(s)	128, 2220
AvaI	CYCGRG	1 cut(s)	587
AvaII	GGWCC	7 cut(s)	1065, 1232, 1263, 1282, 1355, 2231, 2389
BaeGI	GKGCMC	2 cut(s)	310, 1928
BalI	TGGCCA	1 cut(s)	1860
BanI	GGYRCC	1 cut(s)	1925
BanII	GRGCYC	2 cut(s)	889, 1967
BbrPI	CACGTG	1 cut(s)	311
BbsI	GAAGAC	2 cut(s)	1309, 2019
BbvI	GCAGC	8 cut(s)	274, 711, 934, 1790, 2243, 2347, 2536, 2539
BccI	CCATC	6 cut(s)	242, 244, 571, 1697, 1967, 2441
BceAI	ACGGC	2 cut(s)	167, 481
BciT130I	CCWGG	1 cut(s)	2328
BciVI	GTATCC	3 cut(s)	105, 1165, 1428
BclI	TGATCA	1 cut(s)	216
BcnI	CCSGG	4 cut(s)	223, 1091, 1236, 2396
BcoDI	GTCTC	5 cut(s)	584, 806, 1034, 1785, 1973
BfaI	CTAG	6 cut(s)	14, 458, 611, 951, 1211, 2174
BfmI	CTRYAG	1 cut(s)	1968
BfuAI	ACCTGC	1 cut(s)	1022
BfuI	GTATCC	3 cut(s)	105, 1165, 1428
BglII	AGATCT	1 cut(s)	2214
BisI	GCNGC	9 cut(s)	263, 700, 948, 1779, 2257, 2308, 2361, 2550, 2553
BlsI	GCNGC	9 cut(s)	264, 701, 949, 1780, 2258, 2309, 2362, 2551, 2554
BmcAI	AGTACT	4 cut(s)	27, 961, 1500, 1523
Bme1390I	CCNGG	5 cut(s)	223, 1091, 1236, 2328, 2396
Bme18I	GGWCC	7 cut(s)	1065, 1232, 1263, 1282, 1355, 2231, 2389
BmeRI	GACNNNNNGTC	2 cut(s)	757, 1238
BmeT110I	CYCGRG	1 cut(s)	587
BmiI	GGNNCC	6 cut(s)	346, 1283, 1356, 1911, 1927, 2391
BmrFI	CCNGG	5 cut(s)	223, 1091, 1236, 2328, 2396
BmsI	GCATC	6 cut(s)	147, 174, 841, 1311, 1351, 1694
BpiI	GAAGAC	2 cut(s)	1309, 2019
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
BpmI	CTGGAG	1 cut(s)	2465
Bpu10I	CCTNAGC	1 cut(s)	1584
Bpu14I	TTCGAA	2 cut(s)	128, 2220
BpuMI	CCSGG	4 cut(s)	223, 1091, 1236, 2396
Bsa29I	ATCGAT	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	1034
BsaJI	CCNNGG	9 cut(s)	142, 149, 408, 712, 2178, 2266, 2326, 2394, 2592
BsaWI	WCCGGW	3 cut(s)	178, 1357, 1918
BsaXI	ACNNNNNCTCC	4 cut(s)	1325, 1355, 1514, 1544
Bse1I	ACTGG	2 cut(s)	33, 1861
Bse3DI	GCAATG	3 cut(s)	308, 452, 1153
BseAI	TCCGGA	3 cut(s)	178, 1357, 1918
BseBI	CCWGG	1 cut(s)	2328
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	9 cut(s)	142, 149, 408, 712, 2178, 2266, 2326, 2394, 2592
BseGI	GGATG	7 cut(s)	138, 856, 1302, 1366, 1685, 1796, 1878
BseMI	GCAATG	3 cut(s)	308, 452, 1153
BseMII	CTCAG	5 cut(s)	425, 681, 801, 1029, 1575
BseNI	ACTGG	2 cut(s)	33, 1861
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	2 cut(s)	310, 1928
BseXI	GCAGC	8 cut(s)	274, 711, 934, 1790, 2243, 2347, 2536, 2539
BseYI	CCCAGC	1 cut(s)	2597
BsgI	GTGCAG	6 cut(s)	281, 383, 1134, 1316, 1637, 2242
Bsh1285I	CGRYCG	1 cut(s)	119
BshFI	GGCC	6 cut(s)	148, 154, 468, 1860, 1910, 2325
BshNI	GGYRCC	1 cut(s)	1925
BshVI	ATCGAT	1 cut(s)	246
BsiEI	CGRYCG	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	587
BsiSI	CCGG	9 cut(s)	179, 223, 1091, 1235, 1325, 1358, 1379, 1919, 2396
BslFI	GGGAC	5 cut(s)	1277, 1295, 1462, 1852, 2375
BsmAI	GTCTC	5 cut(s)	584, 806, 1034, 1785, 1973
BsmFI	GGGAC	5 cut(s)	1277, 1295, 1462, 1852, 2375
BsmI	GAATGC	1 cut(s)	2289
BsnI	GGCC	6 cut(s)	148, 154, 468, 1860, 1910, 2325
Bso31I	GGTCTC	1 cut(s)	1034
BsoBI	CYCGRG	1 cut(s)	587
Bsp119I	TTCGAA	2 cut(s)	128, 2220
Bsp1286I	GDGCHC	4 cut(s)	310, 889, 1928, 1967
Bsp13I	TCCGGA	3 cut(s)	178, 1357, 1918
Bsp1407I	TGTACA	1 cut(s)	1729
Bsp143I	GATC	9 cut(s)	116, 216, 370, 646, 877, 919, 1119, 1138, 2214
Bsp19I	CCATGG	2 cut(s)	2178, 2592
BspACI	CCGC	7 cut(s)	323, 671, 1134, 1180, 1683, 2307, 2582
BspANI	GGCC	6 cut(s)	148, 154, 468, 1860, 1910, 2325
BspCNI	CTCAG	5 cut(s)	426, 680, 802, 1030, 1576
BspDI	ATCGAT	1 cut(s)	246
BspEI	TCCGGA	3 cut(s)	178, 1357, 1918
BspHI	TCATGA	1 cut(s)	1141
BspLI	GGNNCC	6 cut(s)	346, 1283, 1356, 1911, 1927, 2391
BspMI	ACCTGC	1 cut(s)	1022
BspPI	GGATC	4 cut(s)	365, 885, 927, 1146
BspQI	GCTCTTC	2 cut(s)	2028, 2043
BspT104I	TTCGAA	2 cut(s)	128, 2220
BspT107I	GGYRCC	1 cut(s)	1925
BspTNI	GGTCTC	1 cut(s)	1034
BsrDI	GCAATG	3 cut(s)	308, 452, 1153
BsrGI	TGTACA	1 cut(s)	1729
BsrI	ACTGG	2 cut(s)	33, 1861
BssECI	CCNNGG	9 cut(s)	142, 149, 408, 712, 2178, 2266, 2326, 2394, 2592
BssMI	GATC	9 cut(s)	116, 216, 370, 646, 877, 919, 1119, 1138, 2214
BssT1I	CCWWGG	5 cut(s)	408, 712, 2178, 2266, 2592
Bst2UI	CCWGG	1 cut(s)	2328
Bst4CI	ACNGT	4 cut(s)	995, 1057, 1337, 2379
Bst6I	CTCTTC	4 cut(s)	2022, 2028, 2043, 2536
BstAPI	GCANNNNNTGC	2 cut(s)	737, 2491
BstAUI	TGTACA	1 cut(s)	1729
BstBAI	YACGTR	1 cut(s)	311
BstBI	TTCGAA	2 cut(s)	128, 2220
BstC8I	GCNNGC	2 cut(s)	105, 1160
BstDEI	CTNAG	7 cut(s)	83, 375, 434, 667, 810, 1038, 1584
BstDSI	CCRYGG	3 cut(s)	149, 2178, 2592
BstF5I	GGATG	7 cut(s)	138, 856, 1302, 1366, 1685, 1796, 1878
BstKTI	GATC	9 cut(s)	119, 219, 373, 649, 880, 922, 1122, 1141, 2217
BstMAI	GTCTC	5 cut(s)	584, 806, 1034, 1785, 1973
BstMBI	GATC	9 cut(s)	116, 216, 370, 646, 877, 919, 1119, 1138, 2214
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	7 cut(s)	397, 448, 624, 737, 1256, 1659, 2491
BstNI	CCWGG	1 cut(s)	2328
BstNSI	RCATGY	4 cut(s)	970, 1312, 1435, 1827
BstSCI	CCNGG	5 cut(s)	221, 1089, 1234, 2326, 2394
BstSFI	CTRYAG	1 cut(s)	1968
BstSLI	GKGCMC	2 cut(s)	310, 1928
BstV1I	GCAGC	8 cut(s)	274, 711, 934, 1790, 2243, 2347, 2536, 2539
BstV2I	GAAGAC	2 cut(s)	1309, 2019
BstX2I	RGATCY	2 cut(s)	919, 2214
BstXI	CCANNNNNNTGG	1 cut(s)	1868
BstYI	RGATCY	2 cut(s)	919, 2214
Bsu15I	ATCGAT	1 cut(s)	246
BsuI	GTATCC	3 cut(s)	105, 1165, 1428
BsuRI	GGCC	6 cut(s)	148, 154, 468, 1860, 1910, 2325
BsuTUI	ATCGAT	1 cut(s)	246
BtgI	CCRYGG	3 cut(s)	149, 2178, 2592
BtsCI	GGATG	7 cut(s)	138, 856, 1302, 1366, 1685, 1796, 1878
BtsI	GCAGTG	3 cut(s)	1044, 1328, 1625
BtsIMutI	CAGTG	6 cut(s)	807, 1044, 1328, 1625, 1868, 2247
BveI	ACCTGC	1 cut(s)	1022
Cac8I	GCNNGC	2 cut(s)	105, 1160
CaiI	CAGNNNCTG	1 cut(s)	1037
CciI	TCATGA	1 cut(s)	1141
ClaI	ATCGAT	1 cut(s)	246
CseI	GACGC	1 cut(s)	761
Csp6I	GTAC	6 cut(s)	26, 960, 1499, 1522, 1730, 2183
CviQI	GTAC	6 cut(s)	26, 960, 1499, 1522, 1730, 2183
DdeI	CTNAG	7 cut(s)	83, 375, 434, 667, 810, 1038, 1584
DpnI	GATC	9 cut(s)	118, 218, 372, 648, 879, 921, 1121, 1140, 2216
DpnII	GATC	9 cut(s)	116, 216, 370, 646, 877, 919, 1119, 1138, 2214
DraI	TTTAAA	1 cut(s)	2205
DrdI	GACNNNNNNGTC	1 cut(s)	1289
DriI	GACNNNNNGTC	2 cut(s)	757, 1238
DseDI	GACNNNNNNGTC	1 cut(s)	1289
EaeI	YGGCCR	1 cut(s)	1858
Eam1104I	CTCTTC	4 cut(s)	2022, 2028, 2043, 2536
Eam1105I	GACNNNNNGTC	2 cut(s)	757, 1238
EarI	CTCTTC	4 cut(s)	2022, 2028, 2043, 2536
Eco130I	CCWWGG	5 cut(s)	408, 712, 2178, 2266, 2592
Eco24I	GRGCYC	2 cut(s)	889, 1967
Eco31I	GGTCTC	1 cut(s)	1034
Eco32I	GATATC	2 cut(s)	244, 676
Eco47I	GGWCC	7 cut(s)	1065, 1232, 1263, 1282, 1355, 2231, 2389
Eco57I	CTGAAG	3 cut(s)	119, 281, 1511
Eco72I	CACGTG	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	587
EcoO109I	RGGNCCY	1 cut(s)	1282
EcoRI	GAATTC	2 cut(s)	524, 606
EcoRII	CCWGG	1 cut(s)	2326
EcoRV	GATATC	2 cut(s)	244, 676
EcoT14I	CCWWGG	5 cut(s)	408, 712, 2178, 2266, 2592
EcoT22I	ATGCAT	1 cut(s)	2291
EcoT38I	GRGCYC	2 cut(s)	889, 1967
ErhI	CCWWGG	5 cut(s)	408, 712, 2178, 2266, 2592
FaqI	GGGAC	5 cut(s)	1277, 1295, 1462, 1852, 2375
FauI	CCCGC	1 cut(s)	1127
FauNDI	CATATG	1 cut(s)	1891
FbaI	TGATCA	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	2347
Fnu4HI	GCNGC	9 cut(s)	263, 700, 948, 1779, 2257, 2308, 2361, 2550, 2553
FokI	GGATG	7 cut(s)	125, 863, 1289, 1373, 1672, 1783, 1865
FriOI	GRGCYC	2 cut(s)	889, 1967
Fsp4HI	GCNGC	9 cut(s)	263, 700, 948, 1779, 2257, 2308, 2361, 2550, 2553
FspBI	CTAG	6 cut(s)	14, 458, 611, 951, 1211, 2174
GluI	GCNGC	9 cut(s)	263, 700, 948, 1779, 2257, 2308, 2361, 2550, 2553
GsaI	CCCAGC	1 cut(s)	2601
GsuI	CTGGAG	1 cut(s)	2465
HaeIII	GGCC	6 cut(s)	148, 154, 468, 1860, 1910, 2325
HapII	CCGG	9 cut(s)	179, 223, 1091, 1235, 1325, 1358, 1379, 1919, 2396
HgaI	GACGC	1 cut(s)	761
HincII	GTYRAC	1 cut(s)	254
HindII	GTYRAC	1 cut(s)	254
HpaII	CCGG	9 cut(s)	179, 223, 1091, 1235, 1325, 1358, 1379, 1919, 2396
HphI	GGTGA	4 cut(s)	211, 1216, 1823, 2462
Hpy166II	GTNNAC	4 cut(s)	254, 1700, 1722, 2348
Hpy8I	GTNNAC	4 cut(s)	254, 1700, 1722, 2348
Hpy99I	CGWCG	1 cut(s)	885
HpyAV	CCTTC	4 cut(s)	165, 868, 910, 1292
HpyCH4III	ACNGT	4 cut(s)	995, 1057, 1337, 2379
HpyCH4IV	ACGT	4 cut(s)	174, 256, 310, 1105
HpyF10VI	GCNNNNNNNGC	7 cut(s)	397, 448, 624, 737, 1256, 1659, 2491
HpyF3I	CTNAG	7 cut(s)	83, 375, 434, 667, 810, 1038, 1584
HpySE526I	ACGT	4 cut(s)	174, 256, 310, 1105
Kpn2I	TCCGGA	3 cut(s)	178, 1357, 1918
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	9 cut(s)	116, 216, 370, 646, 877, 919, 1119, 1138, 2214
LguI	GCTCTTC	2 cut(s)	2028, 2043
LmnI	GCTCC	4 cut(s)	344, 388, 2189, 2484
Lsp1109I	GCAGC	8 cut(s)	274, 711, 934, 1790, 2243, 2347, 2536, 2539
LweI	GCATC	6 cut(s)	147, 174, 841, 1311, 1351, 1694
MaeI	CTAG	6 cut(s)	14, 458, 611, 951, 1211, 2174
MaeII	ACGT	4 cut(s)	174, 256, 310, 1105
MaeIII	GTNAC	5 cut(s)	461, 858, 1337, 1811, 2413
MalI	GATC	9 cut(s)	118, 218, 372, 648, 879, 921, 1121, 1140, 2216
MboI	GATC	9 cut(s)	116, 216, 370, 646, 877, 919, 1119, 1138, 2214
MfeI	CAATTG	3 cut(s)	268, 1009, 1725
MflI	RGATCY	2 cut(s)	919, 2214
MhlI	GDGCHC	4 cut(s)	310, 889, 1928, 1967
MlsI	TGGCCA	1 cut(s)	1860
MluNI	TGGCCA	1 cut(s)	1860
MlyI	GAGTC	7 cut(s)	629, 1248, 1334, 1444, 1593, 1787, 1808
MmeI	TCCRAC	2 cut(s)	225, 1824
Mox20I	TGGCCA	1 cut(s)	1860
Mph1103I	ATGCAT	1 cut(s)	2291
MroI	TCCGGA	3 cut(s)	178, 1357, 1918
MroXI	GAANNNNTTC	1 cut(s)	1107
MscI	TGGCCA	1 cut(s)	1860
MseI	TTAA	7 cut(s)	383, 543, 560, 1374, 1899, 2204, 2528
MslI	CAYNNNNRTG	2 cut(s)	360, 1307
Msp20I	TGGCCA	1 cut(s)	1860
MspA1I	CMGCKG	2 cut(s)	671, 2256
MspI	CCGG	9 cut(s)	179, 223, 1091, 1235, 1325, 1358, 1379, 1919, 2396
MspR9I	CCNGG	5 cut(s)	223, 1091, 1236, 2328, 2396
MunI	CAATTG	3 cut(s)	268, 1009, 1725
Mva1269I	GAATGC	1 cut(s)	2289
MvaI	CCWGG	1 cut(s)	2328
MwoI	GCNNNNNNNGC	7 cut(s)	397, 448, 624, 737, 1256, 1659, 2491
NciI	CCSGG	4 cut(s)	223, 1091, 1236, 2396
NcoI	CCATGG	2 cut(s)	2178, 2592
NdeI	CATATG	1 cut(s)	1891
NdeII	GATC	9 cut(s)	116, 216, 370, 646, 877, 919, 1119, 1138, 2214
NlaIV	GGNNCC	6 cut(s)	346, 1283, 1356, 1911, 1927, 2391
NmuCI	GTSAC	2 cut(s)	1337, 1811
NsiI	ATGCAT	1 cut(s)	2291
NspI	RCATGY	4 cut(s)	970, 1312, 1435, 1827
NspV	TTCGAA	2 cut(s)	128, 2220
PaeR7I	CTCGAG	1 cut(s)	587
PagI	TCATGA	1 cut(s)	1141
PciI	ACATGT	2 cut(s)	1308, 1823
PciSI	GCTCTTC	2 cut(s)	2028, 2043
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PctI	GAATGC	1 cut(s)	2289
PdmI	GAANNNNTTC	1 cut(s)	1107
PflMI	CCANNNNNTGG	1 cut(s)	1350
PkrI	GCNGC	9 cut(s)	264, 701, 949, 1780, 2258, 2309, 2362, 2551, 2554
Ple19I	CGATCG	1 cut(s)	119
PleI	GAGTC	7 cut(s)	628, 1247, 1334, 1444, 1593, 1787, 1808
PmaCI	CACGTG	1 cut(s)	311
PmlI	CACGTG	1 cut(s)	311
PpsI	GAGTC	7 cut(s)	628, 1247, 1334, 1444, 1593, 1787, 1808
Ppu21I	YACGTR	1 cut(s)	311
PpuMI	RGGWCCY	1 cut(s)	1282
PscI	ACATGT	2 cut(s)	1308, 1823
PsiI	TTATAA	1 cut(s)	1566
Psp1406I	AACGTT	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	1282
Psp6I	CCWGG	1 cut(s)	2326
PspCI	CACGTG	1 cut(s)	311
PspFI	CCCAGC	1 cut(s)	2597
PspGI	CCWGG	1 cut(s)	2326
PspN4I	GGNNCC	6 cut(s)	346, 1283, 1356, 1911, 1927, 2391
PspPPI	RGGWCCY	1 cut(s)	1282
PstNI	CAGNNNCTG	1 cut(s)	1037
PsuI	RGATCY	2 cut(s)	919, 2214
PvuI	CGATCG	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	2256
RsaI	GTAC	6 cut(s)	27, 961, 1500, 1523, 1731, 2184
RsaNI	GTAC	6 cut(s)	26, 960, 1499, 1522, 1730, 2183
RseI	CAYNNNNRTG	2 cut(s)	360, 1307
SapI	GCTCTTC	2 cut(s)	2028, 2043
SaqAI	TTAA	7 cut(s)	383, 543, 560, 1374, 1899, 2204, 2528
SatI	GCNGC	9 cut(s)	263, 700, 948, 1779, 2257, 2308, 2361, 2550, 2553
Sau3AI	GATC	9 cut(s)	116, 216, 370, 646, 877, 919, 1119, 1138, 2214
ScaI	AGTACT	4 cut(s)	27, 961, 1500, 1523
SchI	GAGTC	7 cut(s)	629, 1248, 1334, 1444, 1593, 1787, 1808
ScrFI	CCNGG	5 cut(s)	223, 1091, 1236, 2328, 2396
SduI	GDGCHC	4 cut(s)	310, 889, 1928, 1967
SfaNI	GCATC	6 cut(s)	147, 174, 841, 1311, 1351, 1694
SfcI	CTRYAG	1 cut(s)	1968
Sfr274I	CTCGAG	1 cut(s)	587
SfuI	TTCGAA	2 cut(s)	128, 2220
SinI	GGWCC	7 cut(s)	1065, 1232, 1263, 1282, 1355, 2231, 2389
SlaI	CTCGAG	1 cut(s)	587
SmiMI	CAYNNNNRTG	2 cut(s)	360, 1307
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
SsiI	CCGC	7 cut(s)	323, 671, 1134, 1180, 1683, 2307, 2582
SspMI	CTAG	6 cut(s)	14, 458, 611, 951, 1211, 2174
StyD4I	CCNGG	5 cut(s)	221, 1089, 1234, 2326, 2394
StyI	CCWWGG	5 cut(s)	408, 712, 2178, 2266, 2592
TaaI	ACNGT	4 cut(s)	995, 1057, 1337, 2379
TaiI	ACGT	4 cut(s)	177, 259, 313, 1108
TaqI	TCGA	8 cut(s)	128, 246, 588, 623, 761, 1453, 1817, 2220
TatI	WGTACW	5 cut(s)	25, 959, 1498, 1521, 1729
TauI	GCSGC	1 cut(s)	2310
Tru1I	TTAA	7 cut(s)	383, 543, 560, 1374, 1899, 2204, 2528
Tru9I	TTAA	7 cut(s)	383, 543, 560, 1374, 1899, 2204, 2528
TscAI	CASTG	6 cut(s)	814, 1051, 1335, 1625, 1868, 2254
TseFI	GTSAC	2 cut(s)	1337, 1811
TseI	GCWGC	8 cut(s)	262, 699, 947, 1778, 2256, 2360, 2549, 2552
Tsp45I	GTSAC	2 cut(s)	1337, 1811
TspDTI	ATGAA	8 cut(s)	504, 851, 1050, 1158, 1286, 2025, 2061, 2561
TspGWI	ACGGA	3 cut(s)	498, 1211, 1685
TspRI	CASTG	6 cut(s)	814, 1051, 1335, 1625, 1868, 2254
Van91I	CCANNNNNTGG	1 cut(s)	1350
VpaK11BI	GGWCC	7 cut(s)	1065, 1232, 1263, 1282, 1355, 2231, 2389
XapI	RAATTY	5 cut(s)	524, 606, 790, 2074, 2524
XbaI	TCTAGA	3 cut(s)	13, 610, 1210
XceI	RCATGY	4 cut(s)	970, 1312, 1435, 1827
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1273
XhoI	CTCGAG	1 cut(s)	587
XmiI	GTMKAC	1 cut(s)	2347
XmnI	GAANNNNTTC	1 cut(s)	1107
XspI	CTAG	6 cut(s)	14, 458, 611, 951, 1211, 2174
ZrmI	AGTACT	4 cut(s)	27, 961, 1500, 1523
Zsp2I	ATGCAT	1 cut(s)	2291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.