Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003304

Physical Location & Seq

Genomic Coordinates Reverse (-)

27217438 .. 27222348

Gene Structure 4911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G298500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGAAAGGTTTTTACAGGTGGTGGACGTGGCCCATCGGGCCGGAGGGGAGTCGTTACTTGGGACGATCAAGATCGCAGTTTTGCCCATAGCAAAGGTTTTTACAGTGTGCTCCTTGGGCCTTCTAATGGCTTCCAAGTATGTTAACATCTTCCCCGCCAGTGGAAGGAAACTCTTAAATGGGCTGGTCTTCTCACTTTTGCTTCCATGTTTGATATTCTCTCAACTTGGACAAGCCATCACCCTACAGAAAATGCTTGAGTGGTGGTTTATTCCTGTGAATGTCGTTCTGGGTAGTACATCAGGCTCTATAATAGGGTATATTGTTGCATCCATTGTCCGTCCACCTTACCCCTTCTTCAAGTTTACAATTGTACAGATTGGAATAGGAAACATTGGGAATGTGCCACTGGTTCTGATTTCAGCTTTATGTAGAGACAAATCAAACCCTTTTGGTGATTCAACTACATGTAAAACAGATGGGACTGCCTATATTTCATTTGGCCAGTGGGTTGGTGCAATCATCCTATACACATATGTATTTCATATGTTGGCCCCCCCTCCAGGGGGTACCTTTGACATTGAGGAGGGAGAGCTCCCAATCAAAAACCCTCGAAATGGCAAGATACCTGATCAAGTTCCGCTGCTTACACATGATGAAAACGAAGAGGCAGCACATGAAGAAGAGGTTGCAGAAACTAACTCAAATGTTTCTCACACACCTAAGATTACAGATTTCTTGGTTTTTTTCTATGAGAAGTTGAAGCTCAAACAATTACTTCAACCCCCTATAATTGCTTCTATCCTGGCCATGGTACTTGGATCGATACCATTTTTAAAGAAAATTATCTTTACCGCTGATGGTCCACTTTTCTTTTTCACAGACAGCTGTATTATCCTTGGGGAGGCCATGATTCCATGCATTCTGTTGGCGTTAGGTGGAAACCTTGTCGATGGTCCAGGAAGTTCAAAACTTGGTCTACGAACAACAGTTGCTATTATAATTGGACGATTAGTCTTGGTGCCCCCTGTAGGACTTGGCATTGTAATGTTGGCCGATAAGCTCGGTTTCCTCCCTGCCGGCGATAAGATGTTCCGATTTGTCCTACTGCTCCAGCACACAATGCCTACATCTGTCCTTGCTGGTGCTGTTGCAAATTTAAGAGGCTGTGGAAGAGAGGCAGCTGCCGTCTTGTTCTGGGTTCACATATTTGCTATCTTCTCCATGGCTGGATGGATTGTATTGTACCTCAACATACTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

422

Amino Acids

45.64

Weight (kDa)

7.6

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01990
fragaria_vesca	FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330
malus_domestica	MD04G1178500.v1.1 MD12G1194000.v1.1
prunus_persica	Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1
pyrus_communis	pycom04g15750 pycom12g18020
rosa_chinensis	RchiOBHm_Chr3g0459731 RchiOBHm_Chr4g0399931
rosa_laevigata	RLG00000021505 RLG00000025062 RLG00000028723
rosa_multiflora	Rmu_sc0000240.1_g000034
rosa_roxburghii	Rroxscaffold_3G00242630 Rroxscaffold_6G00420020
rosa_rugosa	Rorug03G0037900 Rorug03G0037900 Rorug03G0038000.1 Rorug03G0038100
rosa_samantha	Rh1AG210400 Rh3AG096400 Rh3BG099100 Rh3CG101000 Rh3DG100400
rosa_wichuraiana	Rw4G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1001
Acc65I	GGTACC	1 cut(s)	569
AccB1I	GGYRCC	2 cut(s)	569, 1021
AccI	GTMKAC	1 cut(s)	979
AciI	CCGC	3 cut(s)	156, 641, 855
AclWI	GGATC	1 cut(s)	829
AcoI	YGGCCR	3 cut(s)	502, 807, 1053
AcsI	RAATTY	1 cut(s)	1156
AfaI	GTAC	5 cut(s)	298, 375, 571, 816, 1247
AflIII	ACRYGT	1 cut(s)	467
AgsI	TTSAA	5 cut(s)	361, 462, 763, 782, 969
AhdI	GACNNNNNGTC	1 cut(s)	1013
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	3 cut(s)	562, 804, 958
AluBI	AGCT	6 cut(s)	425, 595, 766, 888, 1063, 1184
AluI	AGCT	6 cut(s)	425, 595, 766, 888, 1063, 1184
Alw21I	GWGCWC	2 cut(s)	113, 597
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	1 cut(s)	829
AoxI	GGCC	8 cut(s)	30, 39, 118, 502, 552, 807, 906, 1053
ApeKI	GCWGC	4 cut(s)	643, 671, 1181, 1184
ApoI	RAATTY	1 cut(s)	1156
Asp718I	GGTACC	1 cut(s)	569
AspS9I	GGNCC	6 cut(s)	31, 39, 118, 553, 863, 956
AsuHPI	GGTGA	2 cut(s)	232, 467
AvaII	GGWCC	2 cut(s)	863, 956
BaeGI	GKGCMC	1 cut(s)	1026
BalI	TGGCCA	2 cut(s)	504, 809
BanI	GGYRCC	2 cut(s)	569, 1021
BanII	GRGCYC	1 cut(s)	597
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	2 cut(s)	113, 597
BbvI	GCAGC	4 cut(s)	630, 683, 1171, 1193
BccI	CCATC	6 cut(s)	42, 245, 473, 854, 947, 1227
BceAI	ACGGC	1 cut(s)	1172
BciT130I	CCWGG	3 cut(s)	564, 806, 960
BclI	TGATCA	1 cut(s)	631
BcoDI	GTCTC	1 cut(s)	429
BfmI	CTRYAG	2 cut(s)	245, 1029
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	4 cut(s)	644, 672, 1182, 1185
BlsI	GCNGC	4 cut(s)	645, 673, 1183, 1186
Bme1390I	CCNGG	3 cut(s)	564, 806, 960
Bme18I	GGWCC	2 cut(s)	863, 956
BmeRI	GACNNNNNGTC	1 cut(s)	1013
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	6 cut(s)	31, 39, 118, 553, 863, 956
BmiI	GGNNCC	3 cut(s)	555, 571, 1023
BmrFI	CCNGG	3 cut(s)	564, 806, 960
BmsI	GCATC	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	181
BpmI	CTGGAG	2 cut(s)	546, 1097
BpuEI	CTTGAG	1 cut(s)	278
Bsa29I	ATCGAT	1 cut(s)	824
BsaBI	GATNNNNATC	1 cut(s)	71
BsaJI	CCNNGG	5 cut(s)	114, 563, 810, 898, 1224
Bse118I	RCCGGY	1 cut(s)	1079
Bse1I	ACTGG	3 cut(s)	159, 414, 505
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	3 cut(s)	564, 806, 960
BseCI	ATCGAT	1 cut(s)	824
BseDI	CCNNGG	5 cut(s)	114, 563, 810, 898, 1224
BseGI	GGATG	3 cut(s)	329, 522, 1238
BseJI	GATNNNNATC	1 cut(s)	71
BseNI	ACTGG	3 cut(s)	159, 414, 505
BseRI	GAGGAG	1 cut(s)	599
BseSI	GKGCMC	1 cut(s)	1026
BseXI	GCAGC	4 cut(s)	630, 683, 1171, 1193
BshFI	GGCC	8 cut(s)	32, 41, 120, 504, 554, 809, 908, 1055
BshNI	GGYRCC	2 cut(s)	569, 1021
BshVI	ATCGAT	1 cut(s)	824
BsiHKAI	GWGCWC	2 cut(s)	113, 597
BsiSI	CCGG	2 cut(s)	42, 1080
BslFI	GGGAC	2 cut(s)	76, 496
BsmAI	GTCTC	1 cut(s)	429
BsmFI	GGGAC	2 cut(s)	76, 496
BsmI	GAATGC	1 cut(s)	921
BsnI	GGCC	8 cut(s)	32, 41, 120, 504, 554, 809, 908, 1055
Bsp1286I	GDGCHC	3 cut(s)	113, 597, 1026
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	4 cut(s)	66, 72, 631, 821
Bsp19I	CCATGG	2 cut(s)	810, 1224
BspACI	CCGC	3 cut(s)	156, 641, 855
BspANI	GGCC	8 cut(s)	32, 41, 120, 504, 554, 809, 908, 1055
BspDI	ATCGAT	1 cut(s)	824
BspLI	GGNNCC	3 cut(s)	555, 571, 1023
BspPI	GGATC	1 cut(s)	829
BspT107I	GGYRCC	2 cut(s)	569, 1021
BsrFI	RCCGGY	1 cut(s)	1079
BsrGI	TGTACA	1 cut(s)	373
BsrI	ACTGG	3 cut(s)	159, 414, 505
BssAI	RCCGGY	1 cut(s)	1079
BssECI	CCNNGG	5 cut(s)	114, 563, 810, 898, 1224
BssMI	GATC	4 cut(s)	66, 72, 631, 821
BssT1I	CCWWGG	4 cut(s)	114, 810, 898, 1224
Bst2UI	CCWGG	3 cut(s)	564, 806, 960
Bst4CI	ACNGT	3 cut(s)	106, 991, 1260
Bst6I	CTCTTC	3 cut(s)	660, 678, 1168
BstAPI	GCANNNNNTGC	1 cut(s)	1123
BstAUI	TGTACA	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	1081
BstDEI	CTNAG	1 cut(s)	723
BstDSI	CCRYGG	2 cut(s)	810, 1224
BstENI	CCTNNNNNAGG	1 cut(s)	902
BstF5I	GGATG	3 cut(s)	329, 522, 1238
BstKTI	GATC	4 cut(s)	69, 75, 634, 824
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	4 cut(s)	66, 72, 631, 821
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 117, 1123
BstNI	CCWGG	3 cut(s)	564, 806, 960
BstNSI	RCATGY	1 cut(s)	471
BstSCI	CCNGG	3 cut(s)	562, 804, 958
BstSFI	CTRYAG	2 cut(s)	245, 1029
BstSLI	GKGCMC	1 cut(s)	1026
BstV1I	GCAGC	4 cut(s)	630, 683, 1171, 1193
BstV2I	GAAGAC	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	512
Bsu15I	ATCGAT	1 cut(s)	824
BsuRI	GGCC	8 cut(s)	32, 41, 120, 504, 554, 809, 908, 1055
BsuTUI	ATCGAT	1 cut(s)	824
BtgI	CCRYGG	2 cut(s)	810, 1224
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	329, 522, 1238
BtsIMutI	CAGTG	4 cut(s)	111, 166, 407, 512
Cac8I	GCNNGC	1 cut(s)	1081
Cfr10I	RCCGGY	1 cut(s)	1079
Cfr13I	GGNCC	6 cut(s)	31, 39, 118, 553, 863, 956
ClaI	ATCGAT	1 cut(s)	824
Csp6I	GTAC	5 cut(s)	297, 374, 570, 815, 1246
CviAII	CATG	8 cut(s)	207, 468, 653, 677, 811, 910, 918, 1225
CviQI	GTAC	5 cut(s)	297, 374, 570, 815, 1246
DdeI	CTNAG	1 cut(s)	723
DpnI	GATC	4 cut(s)	68, 74, 633, 823
DpnII	GATC	4 cut(s)	66, 72, 631, 821
DraI	TTTAAA	1 cut(s)	837
DriI	GACNNNNNGTC	1 cut(s)	1013
EaeI	YGGCCR	3 cut(s)	502, 807, 1053
Eam1104I	CTCTTC	3 cut(s)	660, 678, 1168
Eam1105I	GACNNNNNGTC	1 cut(s)	1013
EarI	CTCTTC	3 cut(s)	660, 678, 1168
Ecl136II	GAGCTC	1 cut(s)	595
Eco130I	CCWWGG	4 cut(s)	114, 810, 898, 1224
Eco24I	GRGCYC	1 cut(s)	597
Eco47I	GGWCC	2 cut(s)	863, 956
Eco53kI	GAGCTC	1 cut(s)	595
EcoICRI	GAGCTC	1 cut(s)	595
EcoNI	CCTNNNNNAGG	1 cut(s)	902
EcoRII	CCWGG	3 cut(s)	562, 804, 958
EcoT14I	CCWWGG	4 cut(s)	114, 810, 898, 1224
EcoT22I	ATGCAT	1 cut(s)	923
EcoT38I	GRGCYC	1 cut(s)	597
ErhI	CCWWGG	4 cut(s)	114, 810, 898, 1224
FaeI	CATG	8 cut(s)	210, 471, 656, 680, 814, 913, 921, 1228
FaqI	GGGAC	2 cut(s)	76, 496
FatI	CATG	8 cut(s)	206, 467, 652, 676, 810, 909, 917, 1224
FauI	CCCGC	1 cut(s)	163
FauNDI	CATATG	2 cut(s)	535, 546
FbaI	TGATCA	1 cut(s)	631
FblI	GTMKAC	1 cut(s)	979
Fnu4HI	GCNGC	4 cut(s)	644, 672, 1182, 1185
FokI	GGATG	3 cut(s)	316, 509, 1245
FriOI	GRGCYC	1 cut(s)	597
Fsp4HI	GCNGC	4 cut(s)	644, 672, 1182, 1185
GluI	GCNGC	4 cut(s)	644, 672, 1182, 1185
GsuI	CTGGAG	2 cut(s)	546, 1097
HaeIII	GGCC	8 cut(s)	32, 41, 120, 504, 554, 809, 908, 1055
HapII	CCGG	2 cut(s)	42, 1080
Hin1II	CATG	8 cut(s)	210, 471, 656, 680, 814, 913, 921, 1228
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	3 cut(s)	50, 458, 913
HpaI	GTTAAC	1 cut(s)	145
HpaII	CCGG	2 cut(s)	42, 1080
HphI	GGTGA	2 cut(s)	232, 467
Hpy166II	GTNNAC	7 cut(s)	25, 145, 344, 366, 866, 980, 1204
Hpy188I	TCNGA	2 cut(s)	417, 1097
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	7 cut(s)	25, 145, 344, 366, 866, 980, 1204
HpyAV	CCTTC	3 cut(s)	131, 159, 364
HpyCH4III	ACNGT	3 cut(s)	106, 991, 1260
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	5 cut(s)	329, 518, 692, 921, 1154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 117, 1123
HpyF3I	CTNAG	1 cut(s)	723
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	8 cut(s)	210, 471, 656, 680, 814, 913, 921, 1228
KpnI	GGTACC	1 cut(s)	573
KroI	GCCGGC	1 cut(s)	1079
KroNI	GCCGGC	1 cut(s)	1081
Ksp22I	TGATCA	1 cut(s)	631
KspAI	GTTAAC	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	66, 72, 631, 821
LmnI	GCTCC	3 cut(s)	116, 600, 1116
Lsp1109I	GCAGC	4 cut(s)	630, 683, 1171, 1193
LweI	GCATC	1 cut(s)	338
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	54
MalI	GATC	4 cut(s)	68, 74, 633, 823
MboI	GATC	4 cut(s)	66, 72, 631, 821
MboII	GAAGA	8 cut(s)	142, 181, 349, 677, 692, 695, 1185, 1210
MfeI	CAATTG	1 cut(s)	369
MhlI	GDGCHC	3 cut(s)	113, 597, 1026
MlsI	TGGCCA	2 cut(s)	504, 809
MluCI	AATT	6 cut(s)	369, 773, 792, 843, 1002, 1156
MluNI	TGGCCA	2 cut(s)	504, 809
MlyI	GAGTC	1 cut(s)	59
Mox20I	TGGCCA	2 cut(s)	504, 809
Mph1103I	ATGCAT	1 cut(s)	923
MroNI	GCCGGC	1 cut(s)	1079
MscI	TGGCCA	2 cut(s)	504, 809
MseI	TTAA	4 cut(s)	144, 176, 836, 1160
MslI	CAYNNNNRTG	1 cut(s)	1046
Msp20I	TGGCCA	2 cut(s)	504, 809
MspA1I	CMGCKG	4 cut(s)	643, 857, 888, 1184
MspI	CCGG	2 cut(s)	42, 1080
MspR9I	CCNGG	3 cut(s)	564, 806, 960
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	921
MvaI	CCWGG	3 cut(s)	564, 806, 960
MwoI	GCNNNNNNNGC	3 cut(s)	38, 117, 1123
NaeI	GCCGGC	1 cut(s)	1081
NcoI	CCATGG	2 cut(s)	810, 1224
NdeI	CATATG	2 cut(s)	535, 546
NdeII	GATC	4 cut(s)	66, 72, 631, 821
NgoMIV	GCCGGC	1 cut(s)	1079
NlaIII	CATG	8 cut(s)	210, 471, 656, 680, 814, 913, 921, 1228
NlaIV	GGNNCC	3 cut(s)	555, 571, 1023
NsiI	ATGCAT	1 cut(s)	923
NspI	RCATGY	1 cut(s)	471
PciI	ACATGT	1 cut(s)	467
PctI	GAATGC	1 cut(s)	921
PdiI	GCCGGC	1 cut(s)	1081
PfeI	GAWTC	2 cut(s)	458, 913
PfoI	TCCNGGA	1 cut(s)	958
PkrI	GCNGC	4 cut(s)	645, 673, 1183, 1186
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PscI	ACATGT	1 cut(s)	467
PsiI	TTATAA	1 cut(s)	1001
Psp124BI	GAGCTC	1 cut(s)	597
Psp6I	CCWGG	3 cut(s)	562, 804, 958
PspGI	CCWGG	3 cut(s)	562, 804, 958
PspN4I	GGNNCC	3 cut(s)	555, 571, 1023
PspPI	GGNCC	6 cut(s)	31, 39, 118, 553, 863, 956
PvuII	CAGCTG	2 cut(s)	888, 1184
RsaI	GTAC	5 cut(s)	298, 375, 571, 816, 1247
RsaNI	GTAC	5 cut(s)	297, 374, 570, 815, 1246
RseI	CAYNNNNRTG	1 cut(s)	1046
SacI	GAGCTC	1 cut(s)	597
SaqAI	TTAA	4 cut(s)	144, 176, 836, 1160
SatI	GCNGC	4 cut(s)	644, 672, 1182, 1185
Sau3AI	GATC	4 cut(s)	66, 72, 631, 821
Sau96I	GGNCC	6 cut(s)	31, 39, 118, 553, 863, 956
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	3 cut(s)	564, 806, 960
SduI	GDGCHC	3 cut(s)	113, 597, 1026
SfaNI	GCATC	1 cut(s)	338
SfcI	CTRYAG	2 cut(s)	245, 1029
SfiI	GGCCNNNNNGGCC	1 cut(s)	38
SinI	GGWCC	2 cut(s)	863, 956
SmiMI	CAYNNNNRTG	1 cut(s)	1046
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	6 cut(s)	369, 773, 792, 843, 1002, 1156
SsiI	CCGC	3 cut(s)	156, 641, 855
SstI	GAGCTC	1 cut(s)	597
StyD4I	CCNGG	3 cut(s)	562, 804, 958
StyI	CCWWGG	4 cut(s)	114, 810, 898, 1224
TaaI	ACNGT	3 cut(s)	106, 991, 1260
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	3 cut(s)	613, 824, 951
TasI	AATT	6 cut(s)	369, 773, 792, 843, 1002, 1156
TatI	WGTACW	2 cut(s)	296, 373
TfiI	GAWTC	2 cut(s)	458, 913
Tru1I	TTAA	4 cut(s)	144, 176, 836, 1160
Tru9I	TTAA	4 cut(s)	144, 176, 836, 1160
TscAI	CASTG	4 cut(s)	111, 166, 414, 512
TseI	GCWGC	4 cut(s)	643, 671, 1181, 1184
TspDTI	ATGAA	4 cut(s)	486, 533, 672, 693
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	4 cut(s)	111, 166, 414, 512
VpaK11BI	GGWCC	2 cut(s)	863, 956
XagI	CCTNNNNNAGG	1 cut(s)	902
XapI	RAATTY	1 cut(s)	1156
XceI	RCATGY	1 cut(s)	471
XmiI	GTMKAC	1 cut(s)	979
Zsp2I	ATGCAT	1 cut(s)	923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.