Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003304

Physical Location & Seq

Genomic Coordinates Reverse (-)

39976962 .. 39981651

Gene Structure 4690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG210400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGTACAAATTGGAATTGGAAACATCGAGAATGTGCCGCTTGTTCTGATTGCAGATTTATGTAGAGACTCATCCAACCCATTTGGTGACTCGACAACATGTAGCACAAATGGGACTGCCTATATTTTGTTTGGCCAGTGGGTAGAGACTTTCTTACCAAAGATTTTGGCAAGCAAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

60

Amino Acids

6.49

Weight (kDa)

4.44

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01990
fragaria_vesca	FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330
malus_domestica	MD04G1178500.v1.1 MD12G1194000.v1.1
prunus_persica	Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1
pyrus_communis	pycom04g15750 pycom12g18020
rosa_chinensis	RchiOBHm_Chr3g0459731 RchiOBHm_Chr4g0399931
rosa_laevigata	RLG00000021505 RLG00000025062 RLG00000028723
rosa_multiflora	Rmu_sc0000240.1_g000034
rosa_roxburghii	Rroxscaffold_3G00242630 Rroxscaffold_6G00420020
rosa_rugosa	Rorug03G0037900 Rorug03G0037900 Rorug03G0038000.1 Rorug03G0038100
rosa_samantha	Rh1AG210400 Rh3AG096400 Rh3BG099100 Rh3CG101000 Rh3DG100400
rosa_wichuraiana	Rw4G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	133
AfaI	GTAC	1 cut(s)	6
AflIII	ACRYGT	1 cut(s)	98
Alw26I	GTCTC	2 cut(s)	60, 140
AoxI	GGCC	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	98
BalI	TGGCCA	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	60, 140
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	60, 140
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	172, 176
BstF5I	GGATG	1 cut(s)	71
BstMAI	GTCTC	2 cut(s)	60, 140
BstNSI	RCATGY	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	172, 176
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	1 cut(s)	135
CviKI_1	RGCY	1 cut(s)	135
CviQI	GTAC	1 cut(s)	5
EaeI	YGGCCR	1 cut(s)	133
FaeI	CATG	1 cut(s)	102
FaiI	YATR	3 cut(s)	61, 100, 123
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	1 cut(s)	98
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	102
HinfI	GANTC	2 cut(s)	68, 89
HphI	GGTGA	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	102
LpnPI	CCDG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	2 cut(s)	9, 15
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	62, 83
MmeI	TCCRAC	1 cut(s)	99
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	135
NlaIII	CATG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	86
NspI	RCATGY	1 cut(s)	102
PciI	ACATGT	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	39
PleI	GAGTC	2 cut(s)	62, 83
PpsI	GAGTC	2 cut(s)	62, 83
PscI	ACATGT	1 cut(s)	98
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
SatI	GCNGC	1 cut(s)	38
SchI	GAGTC	2 cut(s)	62, 83
SgeI	CNNG	5 cut(s)	40, 53, 103, 111, 148
Sse9I	AATT	2 cut(s)	9, 15
SsiI	CCGC	1 cut(s)	38
TaqI	TCGA	2 cut(s)	27, 92
TasI	AATT	2 cut(s)	9, 15
TauI	GCSGC	1 cut(s)	40
TscAI	CASTG	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspRI	CASTG	1 cut(s)	143
XceI	RCATGY	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.