Rw4G008050

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0003304
Physical Location & Seq
Forward (+)
17257117 .. 17262857
5741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G008050.1

Sequence Viewer

Length: 660 bp
ATGGGAATTGGAAACATTGGGAATGTGCCGCTTGTTCTGATTGCAGCTTTATGTAGAGACTCATCCAACCCTTTTGGTGACTCGACAACATGTAGCACAAATGGGACTGCCTATATTTCGTTTCGCCAGGTTGGTGCAATCATCCTTTACACATATGTATTTCATATGTTGGCCCCCCCTCCGGATGGTACCTTTGACATTGATGAGGAAACTCTCCCAATCAAGAGCCCTAGTGATGGCGAGACAATTGGACAAGTTCCTTTGCTTACACCTGAAGACAAAGAAGAAAAGGAAGAGCAAAAAAATGAAGAGCAAGTTGTAGAAGTCAACTCAAATTCTTCAAAGAAATCCAAGATTACAGAATTGTTGATGTTTTTCTATGAGAAATTGAAGCTCAAACAACTTCTTCAACCCTCTATAATAGCTTCTATAAAAGGTTGGTATATGGAGATAATAATAAAGGCATACGGAGGAAGTAGCGGAAGCTCTGAGAACATCACAAGTAGTGATCCGCCCATCGGATCAGGGTTAAACAAGATTTGGCTACCGCTAAACGCTGAATCGATGCTGACGTGGATCAGGCTATGGGCTGACGGCAGTGGGCTTCATGCCTGCTTCTTTGTTTTTGGGCCGAAGGCTGCTGCTGTGCTTCTGGGCTGA

Protein Analysis

219

Amino Acids

23.82

Weight (kDa)

4.82

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 2 - 144 5.2e-13 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 188
AccB1I GGYRCC 1 cut(s) 188
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 4 cut(s) 29, 480, 512, 548
AclWI GGATC 3 cut(s) 503, 529, 584
AcsI RAATTY 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 4 cut(s) 181, 185, 236, 518
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 3 cut(s) 342, 391, 410
AjiI CACGTC 1 cut(s) 573
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 4 cut(s) 47, 394, 425, 486
AluI AGCT 4 cut(s) 47, 394, 425, 486
Alw26I GTCTC 2 cut(s) 51, 236
AlwI GGATC 3 cut(s) 503, 529, 584
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 2 cut(s) 171, 629
ApeKI GCWGC 3 cut(s) 44, 638, 641
ApoI RAATTY 1 cut(s) 334
Asp718I GGTACC 1 cut(s) 188
AspS9I GGNCC 2 cut(s) 172, 629
AsuHPI GGTGA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 3 cut(s) 56, 625, 628
BccI CCATC 3 cut(s) 179, 230, 524
BceAI ACGGC 1 cut(s) 610
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 2 cut(s) 51, 236
BfaI CTAG 1 cut(s) 231
BisI GCNGC 4 cut(s) 29, 45, 639, 642
BlsI GCNGC 4 cut(s) 30, 46, 640, 643
Bme1390I CCNGG 1 cut(s) 128
BmgBI CACGTC 1 cut(s) 573
BmgT120I GGNCC 2 cut(s) 172, 629
BmiI GGNNCC 2 cut(s) 174, 190
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 555
BpiI GAAGAC 1 cut(s) 282
Bsa29I ATCGAT 1 cut(s) 563
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 185, 236, 518
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 563
BseGI GGATG 3 cut(s) 62, 141, 190
BseLI CCNNNNNNNGG 4 cut(s) 181, 185, 236, 518
BseMII CTCAG 1 cut(s) 480
BseXI GCAGC 3 cut(s) 56, 625, 628
BshFI GGCC 2 cut(s) 173, 631
BshNI GGYRCC 1 cut(s) 188
BshVI ATCGAT 1 cut(s) 563
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 4 cut(s) 181, 185, 236, 518
BsmAI GTCTC 2 cut(s) 51, 236
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 2 cut(s) 173, 631
Bsp1286I GDGCHC 1 cut(s) 230
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 3 cut(s) 508, 521, 576
BspACI CCGC 4 cut(s) 29, 480, 512, 548
BspANI GGCC 2 cut(s) 173, 631
BspCNI CTCAG 1 cut(s) 481
BspDI ATCGAT 1 cut(s) 563
BspEI TCCGGA 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 174, 190
BspPI GGATC 3 cut(s) 503, 529, 584
BspQI GCTCTTC 2 cut(s) 288, 303
BspT107I GGYRCC 1 cut(s) 188
BssMI GATC 3 cut(s) 508, 521, 576
Bst2UI CCWGG 1 cut(s) 128
Bst6I CTCTTC 2 cut(s) 288, 303
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 1 cut(s) 489
BstF5I GGATG 3 cut(s) 62, 141, 190
BstKTI GATC 3 cut(s) 511, 524, 579
BstMAI GTCTC 2 cut(s) 51, 236
BstMBI GATC 3 cut(s) 508, 521, 576
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 3 cut(s) 56, 625, 628
BstV2I GAAGAC 1 cut(s) 282
Bsu15I ATCGAT 1 cut(s) 563
BsuRI GGCC 2 cut(s) 173, 631
BsuTUI ATCGAT 1 cut(s) 563
BtrI CACGTC 1 cut(s) 573
BtsCI GGATG 3 cut(s) 62, 141, 190
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 1 cut(s) 604
Cac8I GCNNGC 1 cut(s) 613
Cfr13I GGNCC 2 cut(s) 172, 629
ClaI ATCGAT 1 cut(s) 563
Csp6I GTAC 1 cut(s) 189
CviAII CATG 2 cut(s) 90, 608
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 489
DpnI GATC 3 cut(s) 510, 523, 578
DpnII GATC 3 cut(s) 508, 521, 576
Eam1104I CTCTTC 2 cut(s) 288, 303
EarI CTCTTC 2 cut(s) 288, 303
EciI GGCGGA 1 cut(s) 501
Eco24I GRGCYC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 230
FaeI CATG 2 cut(s) 93, 611
FaqI GGGAC 1 cut(s) 118
FatI CATG 2 cut(s) 89, 607
FauNDI CATATG 2 cut(s) 154, 165
Fnu4HI GCNGC 4 cut(s) 29, 45, 639, 642
FokI GGATG 3 cut(s) 49, 128, 197
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 4 cut(s) 29, 45, 639, 642
FspBI CTAG 1 cut(s) 231
GluI GCNGC 4 cut(s) 29, 45, 639, 642
HaeIII GGCC 2 cut(s) 173, 631
HapII CCGG 1 cut(s) 182
Hin1II CATG 2 cut(s) 93, 611
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 3 cut(s) 59, 80, 560
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 3 cut(s) 39, 490, 521
Hpy188III TCNNGA 2 cut(s) 182, 223
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 1 cut(s) 628
HpyCH4IV ACGT 1 cut(s) 572
HpyCH4V TGCA 2 cut(s) 44, 137
HpyF3I CTNAG 1 cut(s) 489
HpySE526I ACGT 1 cut(s) 572
Hsp92II CATG 2 cut(s) 93, 611
Kpn2I TCCGGA 1 cut(s) 181
KpnI GGTACC 1 cut(s) 192
Kzo9I GATC 3 cut(s) 508, 521, 576
LguI GCTCTTC 2 cut(s) 288, 303
LpnPI CCDG 8 cut(s) 113, 140, 195, 285, 510, 565, 625, 638
Lsp1109I GCAGC 3 cut(s) 56, 625, 628
LweI GCATC 1 cut(s) 555
MaeI CTAG 1 cut(s) 231
MaeII ACGT 1 cut(s) 572
MaeIII GTNAC 1 cut(s) 77
MalI GATC 3 cut(s) 510, 523, 578
MboI GATC 3 cut(s) 508, 521, 576
MboII GAAGA 6 cut(s) 287, 296, 305, 320, 330, 398
MfeI CAATTG 1 cut(s) 246
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 5 cut(s) 6, 246, 334, 362, 386
MlyI GAGTC 2 cut(s) 53, 74
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 4 cut(s) 189, 199, 424, 464
MroI TCCGGA 1 cut(s) 181
MseI TTAA 1 cut(s) 530
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 128
MunI CAATTG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 128
NdeI CATATG 2 cut(s) 154, 165
NdeII GATC 3 cut(s) 508, 521, 576
NlaIII CATG 2 cut(s) 93, 611
NlaIV GGNNCC 2 cut(s) 174, 190
NmuCI GTSAC 1 cut(s) 77
NspI RCATGY 1 cut(s) 93
PciI ACATGT 1 cut(s) 89
PciSI GCTCTTC 2 cut(s) 288, 303
PcsI WCGNNNNNNNCGW 1 cut(s) 569
PfeI GAWTC 1 cut(s) 560
PkrI GCNGC 4 cut(s) 30, 46, 640, 643
PleI GAGTC 2 cut(s) 53, 74
PpsI GAGTC 2 cut(s) 53, 74
PscI ACATGT 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 174, 190
PspPI GGNCC 2 cut(s) 172, 629
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SapI GCTCTTC 2 cut(s) 288, 303
SaqAI TTAA 1 cut(s) 530
SatI GCNGC 4 cut(s) 29, 45, 639, 642
Sau3AI GATC 3 cut(s) 508, 521, 576
Sau96I GGNCC 2 cut(s) 172, 629
SchI GAGTC 2 cut(s) 53, 74
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 1 cut(s) 230
SetI ASST 9 cut(s) 49, 132, 194, 274, 396, 427, 439, 488, 575
SfaNI GCATC 1 cut(s) 555
Sse9I AATT 5 cut(s) 6, 246, 334, 362, 386
SsiI CCGC 4 cut(s) 29, 480, 512, 548
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 126
TaiI ACGT 1 cut(s) 575
TaqI TCGA 2 cut(s) 83, 563
TasI AATT 5 cut(s) 6, 246, 334, 362, 386
TauI GCSGC 1 cut(s) 31
TfiI GAWTC 1 cut(s) 560
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 3 cut(s) 44, 638, 641
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 3 cut(s) 152, 321, 596
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 1 cut(s) 604
XapI RAATTY 1 cut(s) 334
XceI RCATGY 1 cut(s) 93
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.