Rh3CG101000

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003304
Physical Location & Seq
Forward (+)
8038641 .. 8040599
1959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG101000.1

Sequence Viewer

Length: 732 bp
ATGTTGGCCCCCCCTCCGGAGGGCACCTTTGACATTGATGAGGAAACTCTCCCAATCAAGAGCCCTACAGATGGAGAGACACTTGGACAAGTTCCTTTGCTTACACATGAAGACCAACAAGAAGAAGAGGAAGAGCAAAAAAATGAAGAGCAAGTTGTAGAAATCAACCCAAATTCTTCAAAGAAATCCATGATTACAGAGCTGTTGACGTTTTTGTATGAGAAATTGAAGCTCAAACAACTTCTTCAACCCCCTATAATAGCTTCTGTCCTAGCCATGGTACTTGGAGCAATACCATTTTTAAAGAAACAGATCTTCGAATCTGGTGGTCCATTTTTCTTCTTCACTGACAGCTGCACTATCCTTGGGGAAGCCATGATTCCATGCATTCTTTTGGCATTAGGCGGCAACCTTATCAATGGCCCAGGAAGTTCCAAACTTGGTCTACGAACAACTGCTGCTATTATATTTTCACGGTTGGTCTTGGTCCCCCCGGTAGGACTTGGGATTGTAACATTGGCCGATAAGCTCGGTTTCCTCCCTGATGGTGATAAGTTGTTTCGTTTTGTCCTACTGCTCCAGCACACAATGCCAACATCTGTTCTTGCTGGTGCTGTTGCAAATTTAAGAGGCTGTGGAAGAGAGGCTGCTGCTGTCTTGTTCTGGGTTCATATATTTGCGGTGTTCTCCATGGCTGGGTGGATTGTTCTGTACCTCAACATACTCTTCTAA

Protein Analysis

243

Amino Acids

26.48

Weight (kDa)

4.85

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 41 - 235 4.8e-46 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccI GTMKAC 1 cut(s) 445
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 2 cut(s) 405, 680
AcoI YGGCCR 1 cut(s) 519
AcsI RAATTY 2 cut(s) 172, 622
AfaI GTAC 2 cut(s) 282, 713
AfiI CCNNNNNNNGG 7 cut(s) 16, 19, 20, 71, 277, 497, 696
AgsI TTSAA 3 cut(s) 180, 229, 248
AjnI CCWGG 1 cut(s) 424
AluBI AGCT 5 cut(s) 202, 232, 263, 354, 529
AluI AGCT 5 cut(s) 202, 232, 263, 354, 529
Alw26I GTCTC 1 cut(s) 71
Aor13HI TCCGGA 1 cut(s) 16
AoxI GGCC 3 cut(s) 6, 421, 519
ApeKI GCWGC 4 cut(s) 354, 458, 647, 650
ApoI RAATTY 2 cut(s) 172, 622
AspS9I GGNCC 4 cut(s) 7, 329, 422, 487
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 1 cut(s) 560
AsuII TTCGAA 1 cut(s) 318
AvaII GGWCC 2 cut(s) 329, 487
BaeGI GKGCMC 1 cut(s) 26
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 117
BbvI GCAGC 4 cut(s) 341, 445, 634, 637
BccI CCATC 2 cut(s) 65, 539
BciT130I CCWGG 1 cut(s) 426
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 66
BglII AGATCT 1 cut(s) 312
BisI GCNGC 5 cut(s) 355, 406, 459, 648, 651
BlsI GCNGC 5 cut(s) 356, 407, 460, 649, 652
Bme1390I CCNGG 2 cut(s) 426, 494
Bme18I GGWCC 2 cut(s) 329, 487
BmgT120I GGNCC 4 cut(s) 7, 329, 422, 487
BmiI GGNNCC 3 cut(s) 9, 25, 489
BmrFI CCNGG 2 cut(s) 426, 494
BpiI GAAGAC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 563
Bpu14I TTCGAA 1 cut(s) 318
BpuMI CCSGG 1 cut(s) 494
BsaJI CCNNGG 5 cut(s) 276, 364, 424, 492, 690
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 7 cut(s) 16, 19, 20, 71, 277, 497, 696
BseAI TCCGGA 1 cut(s) 16
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 5 cut(s) 276, 364, 424, 492, 690
BseLI CCNNNNNNNGG 7 cut(s) 16, 19, 20, 71, 277, 497, 696
BseSI GKGCMC 1 cut(s) 26
BseXI GCAGC 4 cut(s) 341, 445, 634, 637
BseYI CCCAGC 1 cut(s) 695
BsgI GTGCAG 1 cut(s) 340
BshFI GGCC 3 cut(s) 8, 423, 521
BshNI GGYRCC 1 cut(s) 23
BsiSI CCGG 2 cut(s) 17, 494
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 7 cut(s) 16, 19, 20, 71, 277, 497, 696
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 473
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 3 cut(s) 8, 423, 521
Bsp119I TTCGAA 1 cut(s) 318
Bsp1286I GDGCHC 2 cut(s) 26, 65
Bsp13I TCCGGA 1 cut(s) 16
Bsp143I GATC 1 cut(s) 312
Bsp19I CCATGG 2 cut(s) 276, 690
BspACI CCGC 2 cut(s) 405, 680
BspANI GGCC 3 cut(s) 8, 423, 521
BspEI TCCGGA 1 cut(s) 16
BspLI GGNNCC 3 cut(s) 9, 25, 489
BspQI GCTCTTC 2 cut(s) 126, 141
BspT104I TTCGAA 1 cut(s) 318
BspT107I GGYRCC 1 cut(s) 23
BssECI CCNNGG 5 cut(s) 276, 364, 424, 492, 690
BssMI GATC 1 cut(s) 312
BssT1I CCWWGG 3 cut(s) 276, 364, 690
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 1 cut(s) 477
Bst6I CTCTTC 4 cut(s) 120, 126, 141, 634
BstAPI GCANNNNNTGC 1 cut(s) 589
BstBI TTCGAA 1 cut(s) 318
BstDSI CCRYGG 2 cut(s) 276, 690
BstKTI GATC 1 cut(s) 315
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 1 cut(s) 589
BstNI CCWGG 1 cut(s) 426
BstSCI CCNGG 2 cut(s) 424, 492
BstSFI CTRYAG 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 26
BstV1I GCAGC 4 cut(s) 341, 445, 634, 637
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BsuRI GGCC 3 cut(s) 8, 423, 521
BtgI CCRYGG 2 cut(s) 276, 690
BtsIMutI CAGTG 1 cut(s) 345
Cfr13I GGNCC 4 cut(s) 7, 329, 422, 487
Csp6I GTAC 2 cut(s) 281, 712
CviAII CATG 6 cut(s) 107, 190, 277, 376, 384, 691
CviQI GTAC 2 cut(s) 281, 712
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
DraI TTTAAA 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 4 cut(s) 120, 126, 141, 634
EarI CTCTTC 4 cut(s) 120, 126, 141, 634
Eco130I CCWWGG 3 cut(s) 276, 364, 690
Eco24I GRGCYC 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 329, 487
EcoRII CCWGG 1 cut(s) 424
EcoT14I CCWWGG 3 cut(s) 276, 364, 690
EcoT22I ATGCAT 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 65
ErhI CCWWGG 3 cut(s) 276, 364, 690
FaeI CATG 6 cut(s) 110, 193, 280, 379, 387, 694
FaqI GGGAC 1 cut(s) 473
FatI CATG 6 cut(s) 106, 189, 276, 375, 383, 690
FblI GTMKAC 1 cut(s) 445
Fnu4HI GCNGC 5 cut(s) 355, 406, 459, 648, 651
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 5 cut(s) 355, 406, 459, 648, 651
FspBI CTAG 1 cut(s) 272
GluI GCNGC 5 cut(s) 355, 406, 459, 648, 651
GsaI CCCAGC 1 cut(s) 699
GsuI CTGGAG 1 cut(s) 563
HaeIII GGCC 3 cut(s) 8, 423, 521
HapII CCGG 2 cut(s) 17, 494
Hin1II CATG 6 cut(s) 110, 193, 280, 379, 387, 694
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 2 cut(s) 320, 379
HpaII CCGG 2 cut(s) 17, 494
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 2 cut(s) 207, 446
Hpy188III TCNNGA 2 cut(s) 17, 58
Hpy8I GTNNAC 2 cut(s) 207, 446
HpyCH4III ACNGT 1 cut(s) 477
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 3 cut(s) 357, 387, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 589
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 6 cut(s) 110, 193, 280, 379, 387, 694
Kpn2I TCCGGA 1 cut(s) 16
Kzo9I GATC 1 cut(s) 312
LguI GCTCTTC 2 cut(s) 126, 141
LmnI GCTCC 2 cut(s) 287, 582
Lsp1109I GCAGC 4 cut(s) 341, 445, 634, 637
MaeI CTAG 1 cut(s) 272
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 511
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 2 cut(s) 26, 65
MluCI AATT 3 cut(s) 172, 224, 622
MnlI CCTC 8 cut(s) 13, 24, 34, 121, 548, 623, 637, 725
Mph1103I ATGCAT 1 cut(s) 389
MroI TCCGGA 1 cut(s) 16
MseI TTAA 2 cut(s) 302, 626
MspA1I CMGCKG 1 cut(s) 354
MspI CCGG 2 cut(s) 17, 494
MspR9I CCNGG 2 cut(s) 426, 494
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 589
NciI CCSGG 1 cut(s) 494
NcoI CCATGG 2 cut(s) 276, 690
NdeII GATC 1 cut(s) 312
NlaIII CATG 6 cut(s) 110, 193, 280, 379, 387, 694
NlaIV GGNNCC 3 cut(s) 9, 25, 489
NsiI ATGCAT 1 cut(s) 389
NspV TTCGAA 1 cut(s) 318
PciSI GCTCTTC 2 cut(s) 126, 141
PctI GAATGC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 320, 379
PkrI GCNGC 5 cut(s) 356, 407, 460, 649, 652
Psp6I CCWGG 1 cut(s) 424
PspFI CCCAGC 1 cut(s) 695
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 3 cut(s) 9, 25, 489
PspPI GGNCC 4 cut(s) 7, 329, 422, 487
PsuI RGATCY 1 cut(s) 312
PvuII CAGCTG 1 cut(s) 354
RsaI GTAC 2 cut(s) 282, 713
RsaNI GTAC 2 cut(s) 281, 712
SapI GCTCTTC 2 cut(s) 126, 141
SaqAI TTAA 2 cut(s) 302, 626
SatI GCNGC 5 cut(s) 355, 406, 459, 648, 651
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 4 cut(s) 7, 329, 422, 487
ScrFI CCNGG 2 cut(s) 426, 494
SduI GDGCHC 2 cut(s) 26, 65
SetI ASST 9 cut(s) 29, 204, 212, 234, 265, 356, 414, 531, 717
SfcI CTRYAG 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 318
SinI GGWCC 2 cut(s) 329, 487
Sse9I AATT 3 cut(s) 172, 224, 622
SsiI CCGC 2 cut(s) 405, 680
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 424, 492
StyI CCWWGG 3 cut(s) 276, 364, 690
TaaI ACNGT 1 cut(s) 477
TaiI ACGT 1 cut(s) 212
TaqI TCGA 1 cut(s) 318
TasI AATT 3 cut(s) 172, 224, 622
TauI GCSGC 1 cut(s) 408
TfiI GAWTC 2 cut(s) 320, 379
Tru1I TTAA 2 cut(s) 302, 626
Tru9I TTAA 2 cut(s) 302, 626
TscAI CASTG 1 cut(s) 352
TseI GCWGC 4 cut(s) 354, 458, 647, 650
TspDTI ATGAA 3 cut(s) 123, 159, 659
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 2 cut(s) 329, 487
XapI RAATTY 2 cut(s) 172, 622
XmiI GTMKAC 1 cut(s) 445
XspI CTAG 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.