Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003304

Physical Location & Seq

Genomic Coordinates Reverse (-)

35051983 .. 35052867

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGGTACTCATCCGCATCTAGGAGCTAGGTCTCATCATCGGTTGTTGTGTTGGAGTTTCGAAGGTTTTCCTGGGTTGATGTGGATAGGAAATTTGGGGAACATTCTCCTCATTATAATCCCGGCAGTTTGTGAGCAATCAGAGAGCCCATTTGAGGATGCTGACACCTGTGATACTAATGGAATCGCTTATGCTTCACTTTCAATGGCGATACGCACACAGATCTTTTTCTTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

79

Amino Acids

8.78

Weight (kDa)

5.29

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01990
fragaria_vesca	FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330
malus_domestica	MD04G1178500.v1.1 MD12G1194000.v1.1
prunus_persica	Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1
pyrus_communis	pycom04g15750 pycom12g18020
rosa_chinensis	RchiOBHm_Chr3g0459731 RchiOBHm_Chr4g0399931
rosa_laevigata	RLG00000021505 RLG00000025062 RLG00000028723
rosa_multiflora	Rmu_sc0000240.1_g000034
rosa_roxburghii	Rroxscaffold_3G00242630 Rroxscaffold_6G00420020
rosa_rugosa	Rorug03G0037900 Rorug03G0037900 Rorug03G0038000.1 Rorug03G0038100
rosa_samantha	Rh1AG210400 Rh3AG096400 Rh3BG099100 Rh3CG101000 Rh3DG100400
rosa_wichuraiana	Rw4G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
AciI	CCGC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	91
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	2 cut(s)	20, 154
AgsI	TTSAA	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	91
Asp700I	GAANNNNTTC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	122
AsuII	TTCGAA	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	2 cut(s)	20, 27
BglII	AGATCT	1 cut(s)	222
Bme1390I	CCNGG	2 cut(s)	72, 122
BmrFI	CCNGG	2 cut(s)	72, 122
BmsI	GCATC	2 cut(s)	25, 148
Bpu14I	TTCGAA	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 154
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	2 cut(s)	10, 163
BseLI	CCNNNNNNNGG	2 cut(s)	20, 154
BseRI	GAGGAG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	20, 154
BsmAI	GTCTC	1 cut(s)	36
Bso31I	GGTCTC	1 cut(s)	36
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	222
BspACI	CCGC	1 cut(s)	14
BspT104I	TTCGAA	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	72
BstBI	TTCGAA	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	10, 163
BstKTI	GATC	1 cut(s)	225
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	222
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	2 cut(s)	70, 120
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	10, 163
Csp6I	GTAC	1 cut(s)	6
CviJI	RGCY	2 cut(s)	26, 147
CviKI_1	RGCY	2 cut(s)	26, 147
CviQI	GTAC	1 cut(s)	6
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	149
FaiI	YATR	2 cut(s)	116, 192
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	149
FspBI	CTAG	2 cut(s)	20, 27
HapII	CCGG	1 cut(s)	122
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	1 cut(s)	122
Hpy188I	TCNGA	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	4 cut(s)	57, 84, 135, 181
LweI	GCATC	2 cut(s)	25, 148
MaeI	CTAG	2 cut(s)	20, 27
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	1 cut(s)	223
MflI	RGATCY	1 cut(s)	222
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	2 cut(s)	119, 148
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	1 cut(s)	238
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	72, 122
MvaI	CCWGG	1 cut(s)	72
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	183
PsiI	TTATAA	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	238
Sau3AI	GATC	1 cut(s)	222
ScrFI	CCNGG	2 cut(s)	72, 122
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	4 cut(s)	28, 32, 67, 170
SfaNI	GCATC	2 cut(s)	25, 148
SfuI	TTCGAA	1 cut(s)	60
SgeI	CNNG	7 cut(s)	32, 39, 83, 84, 133, 134, 180
Sse9I	AATT	1 cut(s)	91
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	2 cut(s)	20, 27
StyD4I	CCNGG	2 cut(s)	70, 120
TaqI	TCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	238
Tru9I	TTAA	1 cut(s)	238
XapI	RAATTY	1 cut(s)	91
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	2 cut(s)	20, 27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.