Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003304

Physical Location & Seq

Genomic Coordinates Reverse (-)

41354480 .. 41359421

Gene Structure 4942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAGAGGATTTTGGCAGTGGTGGATATGGGGAATCAAGTCGGAGGGGAGTCTTTACTCAGTACCATCAAGATTGCAGTACTGCCCATAGCAAAGGTTTTTACAGTATGTTCTTTGGGTCTTCTTATGGCTTCCAAGTGGTTTATTCCTGCGAATGTAGTTCTTGGTAGCATATCAGGCTCAATCATAGGAAACATTGGGAATGTGCCGCTTGTTCTGATTGCAGCTTTATGTAGAGACTCATCCAACCCTTTTGGTGACTCGACAACATGTAGCACAAATGGGACTGCCTATATTTCGTTTGGCCAGTGGGGTACCTTTGACATTGATGAGGAAACTCTCCCAATCAAGAGCCCCAGTGATGGAGAGACACTTGGACAAGTTCCTTTACTTACACATGAAGACCAAGAAGAAGAGGAAGAGCAAAAAAATGAAGAGCAAGTTGTAGAAGTCAACCCAAATTCTTCAAAGAAATCCAAGGTCCTAGCCATGGTACTTGGAGCAGTACCATTTTTAAAGAAACAGATCTTTGAATCTGGTGGTCCATTTTTCTTCTTCACTGACAGCTGCACTATCCTTGGGGAAGCCATGATTCCATGCATTCTTTTGGCATTAGGCGGCAACCTTATCAATGGCCCAGGAAGTTCCAAACTTGGTCTACGAACAACTGCTGCTATTATATTTTCACGGTTGGTCTTGGTCCCCCCGGCAGGACTTGGGATTGTAACATTGGCCGATAAGCTCGGTTTCCTCCCTGATGGTGATAAGTTGTTTCGTTTTGTCCTACTGCTCCAGCACACAATGCCAACATCTGTTCTTGCTGGTGCTGTTGCAAATTTAAGAGGCTGTGGAAGAGAGGCTGCTGCTGTCTTGTTCTGGGTTCATATATTTGCGGTGTTCTCCATGGCTGGTCCAGATGAAGATTCTTCAATTGGGATTGCCAAGCAACCGGACACTCTAGATGAGCAAGATGTAGGTTATATCGGTGAACTTGCTCAAGTCCGTGCGGATGGTTATATAAGTAATGAAGCTCTATTCAAGAGAGTTATATTGCCGCCGAATTTGAAACTGCAGTTGAGATGGAGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

363

Amino Acids

38.85

Weight (kDa)

4.93

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	10 - 303	2.2e-39	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01990
fragaria_vesca	FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330
malus_domestica	MD04G1178500.v1.1 MD12G1194000.v1.1
prunus_persica	Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1
pyrus_communis	pycom04g15750 pycom12g18020
rosa_chinensis	RchiOBHm_Chr3g0459731 RchiOBHm_Chr4g0399931
rosa_laevigata	RLG00000021505 RLG00000025062 RLG00000028723
rosa_multiflora	Rmu_sc0000240.1_g000034
rosa_roxburghii	Rroxscaffold_3G00242630 Rroxscaffold_6G00420020
rosa_rugosa	Rorug03G0037900 Rorug03G0037900 Rorug03G0038000.1 Rorug03G0038100
rosa_samantha	Rh1AG210400 Rh3AG096400 Rh3BG099100 Rh3CG101000 Rh3DG100400
rosa_wichuraiana	Rw4G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	658
AciI	CCGC	5 cut(s)	209, 618, 893, 1007, 1055
AcoI	YGGCCR	2 cut(s)	304, 732
AcsI	RAATTY	3 cut(s)	460, 835, 1060
AfaI	GTAC	5 cut(s)	64, 81, 316, 495, 507
AfiI	CCNNNNNNNGG	3 cut(s)	362, 490, 710
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	5 cut(s)	468, 533, 930, 1039, 1066
AjnI	CCWGG	1 cut(s)	637
AluBI	AGCT	4 cut(s)	227, 567, 742, 1031
AluI	AGCT	4 cut(s)	227, 567, 742, 1031
Alw26I	GTCTC	2 cut(s)	231, 362
AoxI	GGCC	3 cut(s)	304, 634, 732
ApeKI	GCWGC	5 cut(s)	224, 567, 671, 860, 863
ApoI	RAATTY	3 cut(s)	460, 835, 1060
Asp718I	GGTACC	1 cut(s)	314
AspS9I	GGNCC	5 cut(s)	481, 542, 635, 700, 911
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	3 cut(s)	269, 773, 998
AvaII	GGWCC	4 cut(s)	481, 542, 700, 911
BalI	TGGCCA	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	356
BbsI	GAAGAC	2 cut(s)	113, 408
BbvI	GCAGC	5 cut(s)	236, 554, 658, 847, 850
BccI	CCATC	5 cut(s)	74, 356, 752, 1004, 1074
BciT130I	CCWGG	1 cut(s)	639
BcnI	CCSGG	1 cut(s)	707
BcoDI	GTCTC	2 cut(s)	231, 362
BfaI	CTAG	2 cut(s)	485, 959
BfmI	CTRYAG	1 cut(s)	1070
BglII	AGATCT	1 cut(s)	525
BisI	GCNGC	8 cut(s)	209, 225, 568, 619, 672, 861, 864, 1055
BlsI	GCNGC	8 cut(s)	210, 226, 569, 620, 673, 862, 865, 1056
BmcAI	AGTACT	1 cut(s)	81
Bme1390I	CCNGG	2 cut(s)	639, 707
Bme18I	GGWCC	4 cut(s)	481, 542, 700, 911
BmgT120I	GGNCC	5 cut(s)	481, 542, 635, 700, 911
BmiI	GGNNCC	2 cut(s)	316, 702
BmrFI	CCNGG	2 cut(s)	639, 707
BmrI	ACTGGG	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	351
BpiI	GAAGAC	2 cut(s)	113, 408
BpmI	CTGGAG	1 cut(s)	776
BpuEI	CTTGAG	1 cut(s)	981
BpuMI	CCSGG	1 cut(s)	707
BsaJI	CCNNGG	6 cut(s)	477, 489, 577, 637, 705, 903
BsaWI	WCCGGW	1 cut(s)	949
Bsc4I	CCNNNNNNNGG	3 cut(s)	362, 490, 710
Bse1I	ACTGG	2 cut(s)	307, 357
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	6 cut(s)	477, 489, 577, 637, 705, 903
BseGI	GGATG	2 cut(s)	242, 1015
BseLI	CCNNNNNNNGG	3 cut(s)	362, 490, 710
BseMII	CTCAG	1 cut(s)	73
BseNI	ACTGG	2 cut(s)	307, 357
BseXI	GCAGC	5 cut(s)	236, 554, 658, 847, 850
BsgI	GTGCAG	1 cut(s)	553
BshFI	GGCC	3 cut(s)	306, 636, 734
BshNI	GGYRCC	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	707, 950
BslFI	GGGAC	2 cut(s)	298, 686
BslI	CCNNNNNNNGG	3 cut(s)	362, 490, 710
BsmAI	GTCTC	2 cut(s)	231, 362
BsmFI	GGGAC	2 cut(s)	298, 686
BsmI	GAATGC	1 cut(s)	600
BsnI	GGCC	3 cut(s)	306, 636, 734
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp143I	GATC	1 cut(s)	525
Bsp19I	CCATGG	2 cut(s)	489, 903
BspACI	CCGC	5 cut(s)	209, 618, 893, 1007, 1055
BspANI	GGCC	3 cut(s)	306, 636, 734
BspCNI	CTCAG	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	316, 702
BspMAI	CTGCAG	1 cut(s)	1074
BspQI	GCTCTTC	2 cut(s)	414, 429
BspT107I	GGYRCC	1 cut(s)	314
BsrI	ACTGG	2 cut(s)	307, 357
BssECI	CCNNGG	6 cut(s)	477, 489, 577, 637, 705, 903
BssMI	GATC	1 cut(s)	525
BssT1I	CCWWGG	4 cut(s)	477, 489, 577, 903
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	2 cut(s)	106, 690
Bst6I	CTCTTC	4 cut(s)	408, 414, 429, 847
BstAPI	GCANNNNNTGC	1 cut(s)	802
BstDEI	CTNAG	1 cut(s)	59
BstDSI	CCRYGG	2 cut(s)	489, 903
BstF5I	GGATG	2 cut(s)	242, 1015
BstKTI	GATC	1 cut(s)	528
BstMAI	GTCTC	2 cut(s)	231, 362
BstMBI	GATC	1 cut(s)	525
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 802
BstNI	CCWGG	1 cut(s)	639
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	2 cut(s)	637, 705
BstSFI	CTRYAG	1 cut(s)	1070
BstV1I	GCAGC	5 cut(s)	236, 554, 658, 847, 850
BstV2I	GAAGAC	2 cut(s)	113, 408
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
BsuRI	GGCC	3 cut(s)	306, 636, 734
BtgI	CCRYGG	2 cut(s)	489, 903
BtsCI	GGATG	2 cut(s)	242, 1015
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	4 cut(s)	24, 314, 364, 558
Cfr13I	GGNCC	5 cut(s)	481, 542, 635, 700, 911
Csp6I	GTAC	5 cut(s)	63, 80, 315, 494, 506
CviAII	CATG	6 cut(s)	270, 398, 490, 589, 597, 904
CviQI	GTAC	5 cut(s)	63, 80, 315, 494, 506
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	1 cut(s)	527
DpnII	GATC	1 cut(s)	525
DraI	TTTAAA	1 cut(s)	516
EaeI	YGGCCR	2 cut(s)	304, 732
Eam1104I	CTCTTC	4 cut(s)	408, 414, 429, 847
EarI	CTCTTC	4 cut(s)	408, 414, 429, 847
Eco130I	CCWWGG	4 cut(s)	477, 489, 577, 903
Eco24I	GRGCYC	1 cut(s)	356
Eco47I	GGWCC	4 cut(s)	481, 542, 700, 911
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	637
EcoT14I	CCWWGG	4 cut(s)	477, 489, 577, 903
EcoT22I	ATGCAT	1 cut(s)	602
EcoT38I	GRGCYC	1 cut(s)	356
ErhI	CCWWGG	4 cut(s)	477, 489, 577, 903
FaeI	CATG	6 cut(s)	273, 401, 493, 592, 600, 907
FaqI	GGGAC	2 cut(s)	298, 686
FatI	CATG	6 cut(s)	269, 397, 489, 588, 596, 903
FblI	GTMKAC	1 cut(s)	658
Fnu4HI	GCNGC	8 cut(s)	209, 225, 568, 619, 672, 861, 864, 1055
FokI	GGATG	2 cut(s)	229, 1022
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	8 cut(s)	209, 225, 568, 619, 672, 861, 864, 1055
FspBI	CTAG	2 cut(s)	485, 959
GluI	GCNGC	8 cut(s)	209, 225, 568, 619, 672, 861, 864, 1055
GsuI	CTGGAG	1 cut(s)	776
HaeIII	GGCC	3 cut(s)	306, 636, 734
HapII	CCGG	2 cut(s)	707, 950
Hin1II	CATG	6 cut(s)	273, 401, 493, 592, 600, 907
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	7 cut(s)	34, 50, 239, 260, 533, 592, 923
HpaII	CCGG	2 cut(s)	707, 950
HphI	GGTGA	3 cut(s)	269, 773, 998
Hpy166II	GTNNAC	3 cut(s)	454, 659, 989
Hpy188I	TCNGA	2 cut(s)	44, 219
Hpy188III	TCNNGA	5 cut(s)	70, 349, 914, 959, 1039
Hpy8I	GTNNAC	3 cut(s)	454, 659, 989
HpyCH4III	ACNGT	2 cut(s)	106, 690
HpyCH4V	TGCA	6 cut(s)	77, 224, 570, 600, 833, 1072
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 802
HpyF3I	CTNAG	1 cut(s)	59
Hsp92II	CATG	6 cut(s)	273, 401, 493, 592, 600, 907
KpnI	GGTACC	1 cut(s)	318
Kzo9I	GATC	1 cut(s)	525
LguI	GCTCTTC	2 cut(s)	414, 429
LmnI	GCTCC	2 cut(s)	500, 795
Lsp1109I	GCAGC	5 cut(s)	236, 554, 658, 847, 850
MaeI	CTAG	2 cut(s)	485, 959
MaeIII	GTNAC	2 cut(s)	257, 724
MalI	GATC	1 cut(s)	527
MboI	GATC	1 cut(s)	525
MfeI	CAATTG	1 cut(s)	930
MflI	RGATCY	1 cut(s)	525
MhlI	GDGCHC	1 cut(s)	356
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	4 cut(s)	460, 835, 930, 1060
MluNI	TGGCCA	1 cut(s)	306
MlyI	GAGTC	3 cut(s)	59, 233, 254
MmeI	TCCRAC	2 cut(s)	22, 270
MnlI	CCTC	6 cut(s)	38, 325, 409, 761, 836, 850
Mox20I	TGGCCA	1 cut(s)	306
Mph1103I	ATGCAT	1 cut(s)	602
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	2 cut(s)	515, 839
Msp20I	TGGCCA	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	567
MspI	CCGG	2 cut(s)	707, 950
MspR9I	CCNGG	2 cut(s)	639, 707
MunI	CAATTG	1 cut(s)	930
Mva1269I	GAATGC	1 cut(s)	600
MvaI	CCWGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	2 cut(s)	177, 802
NciI	CCSGG	1 cut(s)	707
NcoI	CCATGG	2 cut(s)	489, 903
NdeII	GATC	1 cut(s)	525
NlaIII	CATG	6 cut(s)	273, 401, 493, 592, 600, 907
NlaIV	GGNNCC	2 cut(s)	316, 702
NmuCI	GTSAC	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	602
NspI	RCATGY	1 cut(s)	273
PciI	ACATGT	1 cut(s)	269
PciSI	GCTCTTC	2 cut(s)	414, 429
PctI	GAATGC	1 cut(s)	600
PfeI	GAWTC	4 cut(s)	34, 533, 592, 923
PkrI	GCNGC	8 cut(s)	210, 226, 569, 620, 673, 862, 865, 1056
PleI	GAGTC	3 cut(s)	58, 233, 254
PpsI	GAGTC	3 cut(s)	58, 233, 254
PpuMI	RGGWCCY	1 cut(s)	481
PscI	ACATGT	1 cut(s)	269
Psp5II	RGGWCCY	1 cut(s)	481
Psp6I	CCWGG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	2 cut(s)	316, 702
PspPI	GGNCC	5 cut(s)	481, 542, 635, 700, 911
PspPPI	RGGWCCY	1 cut(s)	481
PstI	CTGCAG	1 cut(s)	1074
PsuI	RGATCY	1 cut(s)	525
PvuII	CAGCTG	1 cut(s)	567
RsaI	GTAC	5 cut(s)	64, 81, 316, 495, 507
RsaNI	GTAC	5 cut(s)	63, 80, 315, 494, 506
SapI	GCTCTTC	2 cut(s)	414, 429
SaqAI	TTAA	2 cut(s)	515, 839
SatI	GCNGC	8 cut(s)	209, 225, 568, 619, 672, 861, 864, 1055
Sau3AI	GATC	1 cut(s)	525
Sau96I	GGNCC	5 cut(s)	481, 542, 635, 700, 911
ScaI	AGTACT	1 cut(s)	81
SchI	GAGTC	3 cut(s)	59, 233, 254
ScrFI	CCNGG	2 cut(s)	639, 707
SduI	GDGCHC	1 cut(s)	356
SetI	ASST	9 cut(s)	99, 229, 320, 483, 569, 627, 744, 979, 1033
SfcI	CTRYAG	1 cut(s)	1070
SinI	GGWCC	4 cut(s)	481, 542, 700, 911
SmlI	CTYRAG	1 cut(s)	996
SmoI	CTYRAG	1 cut(s)	996
Sse9I	AATT	4 cut(s)	460, 835, 930, 1060
SsiI	CCGC	5 cut(s)	209, 618, 893, 1007, 1055
SspMI	CTAG	2 cut(s)	485, 959
StyD4I	CCNGG	2 cut(s)	637, 705
StyI	CCWWGG	4 cut(s)	477, 489, 577, 903
TaaI	ACNGT	2 cut(s)	106, 690
TaqI	TCGA	1 cut(s)	263
TasI	AATT	4 cut(s)	460, 835, 930, 1060
TatI	WGTACW	1 cut(s)	79
TauI	GCSGC	3 cut(s)	211, 621, 1057
TfiI	GAWTC	4 cut(s)	34, 533, 592, 923
Tru1I	TTAA	2 cut(s)	515, 839
Tru9I	TTAA	2 cut(s)	515, 839
TscAI	CASTG	4 cut(s)	24, 314, 364, 565
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	5 cut(s)	224, 567, 671, 860, 863
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	5 cut(s)	414, 447, 872, 933, 1041
TspGWI	ACGGA	1 cut(s)	992
TspRI	CASTG	4 cut(s)	24, 314, 364, 565
VpaK11BI	GGWCC	4 cut(s)	481, 542, 700, 911
XapI	RAATTY	3 cut(s)	460, 835, 1060
XbaI	TCTAGA	1 cut(s)	958
XceI	RCATGY	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	658
XspI	CTAG	2 cut(s)	485, 959
ZrmI	AGTACT	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.