Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003304

Physical Location & Seq

Genomic Coordinates Reverse (-)

26996513 .. 26998206

Gene Structure 1694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028723

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCTCGAGTGGTGGTTTATTCCTGCTTTTGTAGTTCTTGGTAGCATATCAGGCTCAATCATAGGTTATATAACCGCATCCATCGTCCGTCCACCATACCCATACTTCAAGTTCACAATTGTACAAATTGGAATTGGAAACATTGGGAATATGCCGCTTGTTCTGATTGCAGCTTTATGTAGAGACTCATCCAACCCTTTTGGTGACTCGACAACATGTAGCATAAATGGGACTGCCTATATTTCGTTTGGCCAGTGGGTAGGCATTTTGCATTTCACTCTTGATCACCAGAGTTTATGTATTTCATATGTTGCCCCCCCCCCCCCCCCCCCTCCGGAGGGTACCTTTGACATTGATGAGGAAACTCTCCCAATCAAGAGCCCTAGTGATGGAGAGACACTTGGACAAATTACAGAATTGTTGATGTTTTTCTATGAGAAATTGAAGCTCAAACAACTTCGTCAACCCCCTATAATAGCTTCTGTTGATTTACTTTCGAAGGGGTCTAATTTTAATTGTATTTGTGATTGGGTTGTGGAGGCCACTGTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

185

Amino Acids

20.23

Weight (kDa)

4.74

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	1 - 162	6.3e-20	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01990
fragaria_vesca	FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330
malus_domestica	MD04G1178500.v1.1 MD12G1194000.v1.1
prunus_persica	Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1
pyrus_communis	pycom04g15750 pycom12g18020
rosa_chinensis	RchiOBHm_Chr3g0459731 RchiOBHm_Chr4g0399931
rosa_laevigata	RLG00000021505 RLG00000025062 RLG00000028723
rosa_multiflora	Rmu_sc0000240.1_g000034
rosa_roxburghii	Rroxscaffold_3G00242630 Rroxscaffold_6G00420020
rosa_rugosa	Rorug03G0037900 Rorug03G0037900 Rorug03G0038000.1 Rorug03G0038100
rosa_samantha	Rh1AG210400 Rh3AG096400 Rh3BG099100 Rh3CG101000 Rh3DG100400
rosa_wichuraiana	Rw4G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	341
AccIII	TCCGGA	1 cut(s)	334
AciI	CCGC	2 cut(s)	75, 155
AcoI	YGGCCR	1 cut(s)	250
AfaI	GTAC	2 cut(s)	123, 343
AfiI	CCNNNNNNNGG	4 cut(s)	334, 337, 338, 389
AflIII	ACRYGT	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	109, 445
AluBI	AGCT	3 cut(s)	173, 448, 479
AluI	AGCT	3 cut(s)	173, 448, 479
Alw26I	GTCTC	2 cut(s)	177, 389
Ama87I	CYCGRG	1 cut(s)	5
Aor13HI	TCCGGA	1 cut(s)	334
AoxI	GGCC	2 cut(s)	250, 540
ApeKI	GCWGC	1 cut(s)	170
Asp718I	GGTACC	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	215, 278
AsuII	TTCGAA	1 cut(s)	497
AvaI	CYCGRG	1 cut(s)	5
BalI	TGGCCA	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	383
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	2 cut(s)	89, 383
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	2 cut(s)	177, 389
BfaI	CTAG	1 cut(s)	384
BisI	GCNGC	2 cut(s)	155, 171
BlsI	GCNGC	2 cut(s)	156, 172
BmeT110I	CYCGRG	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	343
BmsI	GCATC	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	497
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	4 cut(s)	334, 337, 338, 389
Bse1I	ACTGG	1 cut(s)	253
BseAI	TCCGGA	1 cut(s)	334
BseGI	GGATG	2 cut(s)	77, 188
BseLI	CCNNNNNNNGG	4 cut(s)	334, 337, 338, 389
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	182
BshFI	GGCC	2 cut(s)	252, 542
BshNI	GGYRCC	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	4 cut(s)	334, 337, 338, 389
BsmAI	GTCTC	2 cut(s)	177, 389
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	252, 542
BsoBI	CYCGRG	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp13I	TCCGGA	1 cut(s)	334
Bsp1407I	TGTACA	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	2 cut(s)	75, 155
BspANI	GGCC	2 cut(s)	252, 542
BspEI	TCCGGA	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	343
BspT104I	TTCGAA	1 cut(s)	497
BspT107I	GGYRCC	1 cut(s)	341
BsrGI	TGTACA	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	547
BstAUI	TGTACA	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	497
BstF5I	GGATG	2 cut(s)	77, 188
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	2 cut(s)	177, 389
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	252, 542
BtsCI	GGATG	2 cut(s)	77, 188
BtsIMutI	CAGTG	2 cut(s)	260, 543
Csp6I	GTAC	2 cut(s)	122, 342
CviAII	CATG	1 cut(s)	216
CviJI	RGCY	7 cut(s)	54, 173, 252, 381, 448, 479, 542
CviKI_1	RGCY	7 cut(s)	54, 173, 252, 381, 448, 479, 542
CviQI	GTAC	2 cut(s)	122, 342
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	383
Eco88I	CYCGRG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	383
FaeI	CATG	1 cut(s)	219
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	1 cut(s)	215
FauNDI	CATATG	1 cut(s)	307
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	155, 171
FokI	GGATG	2 cut(s)	64, 175
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	2 cut(s)	155, 171
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	2 cut(s)	155, 171
HaeIII	GGCC	2 cut(s)	252, 542
HapII	CCGG	1 cut(s)	335
Hin1II	CATG	1 cut(s)	219
HincII	GTYRAC	1 cut(s)	464
HindII	GTYRAC	1 cut(s)	464
HinfI	GANTC	2 cut(s)	185, 206
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	2 cut(s)	215, 278
Hpy166II	GTNNAC	3 cut(s)	92, 114, 464
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	3 cut(s)	281, 335, 376
Hpy8I	GTNNAC	3 cut(s)	92, 114, 464
HpyAV	CCTTC	1 cut(s)	493
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4V	TGCA	2 cut(s)	170, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	219
Kpn2I	TCCGGA	1 cut(s)	334
KpnI	GGTACC	1 cut(s)	345
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	283
LpnPI	CCDG	5 cut(s)	36, 36, 266, 302, 348
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MfeI	CAATTG	1 cut(s)	117
MhlI	GDGCHC	1 cut(s)	383
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	8 cut(s)	117, 126, 132, 408, 416, 440, 508, 514
MluNI	TGGCCA	1 cut(s)	252
MlyI	GAGTC	2 cut(s)	179, 200
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	4 cut(s)	331, 342, 352, 532
Mox20I	TGGCCA	1 cut(s)	252
MroI	TCCGGA	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	1 cut(s)	513
Msp20I	TGGCCA	1 cut(s)	252
MspI	CCGG	1 cut(s)	335
MunI	CAATTG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	219
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	219
NspV	TTCGAA	1 cut(s)	497
PaeR7I	CTCGAG	1 cut(s)	5
PciI	ACATGT	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	156, 172
PleI	GAGTC	2 cut(s)	179, 200
PpsI	GAGTC	2 cut(s)	179, 200
PscI	ACATGT	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	343
PspXI	VCTCGAGB	1 cut(s)	5
RsaI	GTAC	2 cut(s)	123, 343
RsaNI	GTAC	2 cut(s)	122, 342
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	2 cut(s)	155, 171
Sau3AI	GATC	1 cut(s)	283
SchI	GAGTC	2 cut(s)	179, 200
SduI	GDGCHC	1 cut(s)	383
SetI	ASST	5 cut(s)	67, 175, 347, 450, 481
SfaNI	GCATC	1 cut(s)	86
Sfr274I	CTCGAG	1 cut(s)	5
SfuI	TTCGAA	1 cut(s)	497
SlaI	CTCGAG	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	8 cut(s)	117, 126, 132, 408, 416, 440, 508, 514
SsiI	CCGC	2 cut(s)	75, 155
SspMI	CTAG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	547
TaqI	TCGA	3 cut(s)	6, 209, 497
TasI	AATT	8 cut(s)	117, 126, 132, 408, 416, 440, 508, 514
TatI	WGTACW	1 cut(s)	121
TauI	GCSGC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	2 cut(s)	260, 550
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	294
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	2 cut(s)	260, 550
XceI	RCATGY	1 cut(s)	219
XhoI	CTCGAG	1 cut(s)	5
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.