MD12G1194000.v1.1

Transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
27540549 .. 27544608
4060 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1194000.v1.1.491

Sequence Viewer

Length: 1287 bp
ATGGAGAGGGTTTTGATGGCGGTGCATCTGGCGAATCAAGTCGGAGGGGAATCGTTACTTGGGACGATCAAGATCGCGGTGCTTCCCATAGCAAAGGTTTTTACTGTGTGCGCCTTGGGGCTTCTAATGGCTTCCAAGTATGTCAACATCTTCCCAGCCAGTGGAAGAAAACTCTTGAATGGGTTGGTCTTCTCGCTATTGCTTCCATGTTTGATATTTTCTCAGCTTGGACAAGCCATCACCCTAAAGAAAATGCTCGAGTGGTGGTTTATTCCCGTGAATGTCGTGATTGGTAGCACTACAGGCTCCATGATAGGTTATATCGTTGCATCAATTGTCCGACCACCGTACCCCTTCTTCAAGTTTACAATTATACAGATTGGAATAGGAAACATCGGGAATGTGCCACTGGTTCTAATTGCAGCTTTGTGTAGAGACAAATCGAACCCTTTCGGTGATACGTGTAAAGCAGATGGGACTGCCTATATTTCATTTGGCCAGTGGGTTGGTGCAATCATTCTATACACGTATGTATTTCAAATGCTGTCCCCCCCTCCTGAAGGTACCTTTGACATTGAGGAGAAAGATCTCCCAATCAAAAGCCCTCAAAACAGCACGAGCATGACACCTGAACAAATTCCGTTGCTTACAAATGATGAAAATAATGAAGAGACAACACGTCAAGAAGAGGTTGCAGAAACTAAAGAGGATGCAGAAACTAACTCAAATGATACAGATAAACCTAAGATTACAAAGTTCTTCGTATTTATATACGAAAAGTTGAAGCTCAAACAAGTTCTCCAACCACCTATAATAGCTTCTATCCTGGCCATGGTACTTGGAGCAATACCATTTTTAAAGAAATTGATCTTTACATCTGATGGTCCACTTTTCTTCTTCACTGATAGCTGCAGTATCCTTGGGGAAGCCATGATTCCGTGCATTCTGTTGGCATTAGGTGGCAACCTTATTGATGGTCCGGGAAGTTCAAAACTTGGTCTACGGACAACTGCTGCAATTATATTTGCACGACTAGTCTTGGTGCCCCCGGTAGGACTTGGCATTGTAATGTTAGCCGATAAGCTTGGCTTCCTCCCTGCCAATGACAAAATGTTTCGATTTATCCTGCTGCTCCAGAACACAATGCCTACATCTGTCCTTGCTGGTGCTGTTGCAAATTTAAGAGGCTGTGGTAGAGAGGCAGCTGCCGTCCTGTTCTGGGTGCACATATTCGCCATCTTCTCCATGGCCGGGTGGATCGTCTTGTACCTCAACCTACTCTTCTGA

Protein Analysis

429

Amino Acids

46.63

Weight (kDa)

7.51

Isoelectric Point (pI)

30.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 27 - 420 3.9e-97 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 563
AccB1I GGYRCC 2 cut(s) 563, 1042
AccB7I CCANNNNNTGG 1 cut(s) 161
AccI GTMKAC 1 cut(s) 1000
AccII CGCG 1 cut(s) 77
AciI CCGC 2 cut(s) 20, 77
AclWI GGATC 1 cut(s) 1265
AcoI YGGCCR 3 cut(s) 496, 828, 1248
AcsI RAATTY 2 cut(s) 636, 1177
AcuI CTGAAG 1 cut(s) 579
AfaI GTAC 4 cut(s) 350, 565, 837, 1268
AfiI CCNNNNNNNGG 6 cut(s) 161, 560, 832, 1052, 1219, 1251
AflIII ACRYGT 3 cut(s) 461, 525, 677
AgsI TTSAA 5 cut(s) 178, 361, 539, 784, 990
AhdI GACNNNNNGTC 1 cut(s) 678
AhlI ACTAGT 1 cut(s) 1033
AjiI CACGTC 1 cut(s) 680
AjnI CCWGG 1 cut(s) 825
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
AluBI AGCT 7 cut(s) 226, 425, 787, 818, 909, 1084, 1205
AluI AGCT 7 cut(s) 226, 425, 787, 818, 909, 1084, 1205
Alw21I GWGCWC 1 cut(s) 1227
Alw26I GTCTC 2 cut(s) 429, 665
Alw44I GTGCAC 1 cut(s) 1223
AlwI GGATC 1 cut(s) 1265
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 3 cut(s) 496, 828, 1248
ApaLI GTGCAC 1 cut(s) 1223
ApeKI GCWGC 6 cut(s) 422, 909, 1013, 1129, 1202, 1205
ApoI RAATTY 2 cut(s) 636, 1177
Asp700I GAANNNNTTC 2 cut(s) 449, 636
Asp718I GGTACC 1 cut(s) 563
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 884, 977
AsuC2I CCSGG 3 cut(s) 981, 1049, 1252
AsuHPI GGTGA 2 cut(s) 232, 467
AvaI CYCGRG 1 cut(s) 257
AvaII GGWCC 2 cut(s) 884, 977
BaeGI GKGCMC 2 cut(s) 1047, 1227
BaeI ACNNNNGTAYC 2 cut(s) 332, 365
BalI TGGCCA 2 cut(s) 498, 830
BanI GGYRCC 2 cut(s) 563, 1042
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
BauI CACGAG 1 cut(s) 616
BbsI GAAGAC 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 1227
BbvI GCAGC 6 cut(s) 434, 896, 1000, 1116, 1192, 1214
BccI CCATC 6 cut(s) 10, 245, 467, 875, 968, 1244
BceAI ACGGC 1 cut(s) 1193
BciT130I CCWGG 1 cut(s) 827
BciVI GTATCC 1 cut(s) 926
BcnI CCSGG 3 cut(s) 981, 1049, 1252
BcoDI GTCTC 2 cut(s) 429, 665
BcuI ACTAGT 1 cut(s) 1033
BfaI CTAG 1 cut(s) 1034
BfmI CTRYAG 2 cut(s) 300, 910
BfuI GTATCC 1 cut(s) 926
BglII AGATCT 1 cut(s) 586
BisI GCNGC 6 cut(s) 423, 910, 1014, 1130, 1203, 1206
BlsI GCNGC 6 cut(s) 424, 911, 1015, 1131, 1204, 1207
Bme1390I CCNGG 4 cut(s) 827, 981, 1049, 1252
Bme18I GGWCC 2 cut(s) 884, 977
BmeRI GACNNNNNGTC 1 cut(s) 678
BmeT110I CYCGRG 1 cut(s) 257
BmgBI CACGTC 1 cut(s) 680
BmgT120I GGNCC 2 cut(s) 884, 977
BmiI GGNNCC 3 cut(s) 307, 565, 1044
BmrFI CCNGG 4 cut(s) 827, 981, 1049, 1252
BmsI GCATC 3 cut(s) 34, 338, 700
BpiI GAAGAC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 1118
BpuMI CCSGG 3 cut(s) 981, 1049, 1252
BsaAI YACGTR 2 cut(s) 462, 528
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 5 cut(s) 114, 831, 919, 1047, 1245
BsaXI ACNNNNNCTCC 2 cut(s) 783, 813
Bsc4I CCNNNNNNNGG 6 cut(s) 161, 560, 832, 1052, 1219, 1251
Bse1I ACTGG 3 cut(s) 159, 414, 499
Bse8I GATNNNNATC 1 cut(s) 71
BseBI CCWGG 1 cut(s) 827
BseDI CCNNGG 5 cut(s) 114, 831, 919, 1047, 1245
BseGI GGATG 1 cut(s) 715
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 6 cut(s) 161, 560, 832, 1052, 1219, 1251
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 3 cut(s) 159, 414, 499
BseRI GAGGAG 1 cut(s) 593
BseSI GKGCMC 2 cut(s) 1047, 1227
BseXI GCAGC 6 cut(s) 434, 896, 1000, 1116, 1192, 1214
BseYI CCCAGC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 3 cut(s) 498, 830, 1250
BshNI GGYRCC 2 cut(s) 563, 1042
BsiHKAI GWGCWC 1 cut(s) 1227
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 3 cut(s) 980, 1049, 1251
BslFI GGGAC 3 cut(s) 76, 490, 532
BslI CCNNNNNNNGG 6 cut(s) 161, 560, 832, 1052, 1219, 1251
BsmAI GTCTC 2 cut(s) 429, 665
BsmFI GGGAC 3 cut(s) 76, 490, 532
BsmI GAATGC 1 cut(s) 942
BsnI GGCC 3 cut(s) 498, 830, 1250
BsoBI CYCGRG 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 1047, 1227
Bsp143I GATC 5 cut(s) 66, 72, 586, 867, 1257
Bsp19I CCATGG 2 cut(s) 831, 1245
BspACI CCGC 2 cut(s) 20, 77
BspANI GGCC 3 cut(s) 498, 830, 1250
BspCNI CTCAG 1 cut(s) 235
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 3 cut(s) 307, 565, 1044
BspMAI CTGCAG 1 cut(s) 914
BspPI GGATC 1 cut(s) 1265
BspT107I GGYRCC 2 cut(s) 563, 1042
BsrI ACTGG 3 cut(s) 159, 414, 499
BssECI CCNNGG 5 cut(s) 114, 831, 919, 1047, 1245
BssMI GATC 5 cut(s) 66, 72, 586, 867, 1257
BssSI CACGAG 1 cut(s) 616
BssT1I CCWWGG 4 cut(s) 114, 831, 919, 1245
Bst2BI CACGAG 1 cut(s) 616
Bst2UI CCWGG 1 cut(s) 827
Bst4CI ACNGT 2 cut(s) 106, 348
Bst6I CTCTTC 2 cut(s) 663, 681
BstBAI YACGTR 2 cut(s) 462, 528
BstDEI CTNAG 2 cut(s) 222, 744
BstDSI CCRYGG 2 cut(s) 831, 1245
BstENI CCTNNNNNAGG 1 cut(s) 558
BstF5I GGATG 1 cut(s) 715
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 5 cut(s) 69, 75, 589, 870, 1260
BstMAI GTCTC 2 cut(s) 429, 665
BstMBI GATC 5 cut(s) 66, 72, 586, 867, 1257
BstMWI GCNNNNNNNGC 1 cut(s) 303
BstNI CCWGG 1 cut(s) 827
BstSCI CCNGG 4 cut(s) 825, 979, 1047, 1250
BstSFI CTRYAG 2 cut(s) 300, 910
BstSLI GKGCMC 2 cut(s) 1047, 1227
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 6 cut(s) 434, 896, 1000, 1116, 1192, 1214
BstV2I GAAGAC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 586
BstXI CCANNNNNNTGG 1 cut(s) 506
BstYI RGATCY 1 cut(s) 586
BsuI GTATCC 1 cut(s) 926
BsuRI GGCC 3 cut(s) 498, 830, 1250
BtgI CCRYGG 2 cut(s) 831, 1245
BtrI CACGTC 1 cut(s) 680
BtsCI GGATG 1 cut(s) 715
BtsIMutI CAGTG 4 cut(s) 166, 407, 506, 900
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 884, 977
Csp6I GTAC 4 cut(s) 349, 564, 836, 1267
CviAII CATG 6 cut(s) 207, 310, 622, 832, 931, 1246
CviQI GTAC 4 cut(s) 349, 564, 836, 1267
DdeI CTNAG 2 cut(s) 222, 744
DpnI GATC 5 cut(s) 68, 74, 588, 869, 1259
DpnII GATC 5 cut(s) 66, 72, 586, 867, 1257
DraI TTTAAA 1 cut(s) 858
DriI GACNNNNNGTC 1 cut(s) 678
EaeI YGGCCR 3 cut(s) 496, 828, 1248
Eam1104I CTCTTC 2 cut(s) 663, 681
Eam1105I GACNNNNNGTC 1 cut(s) 678
EarI CTCTTC 2 cut(s) 663, 681
Eco130I CCWWGG 4 cut(s) 114, 831, 919, 1245
Eco47I GGWCC 2 cut(s) 884, 977
Eco57I CTGAAG 1 cut(s) 579
Eco88I CYCGRG 1 cut(s) 257
EcoNI CCTNNNNNAGG 1 cut(s) 558
EcoRII CCWGG 1 cut(s) 825
EcoT14I CCWWGG 4 cut(s) 114, 831, 919, 1245
ErhI CCWWGG 4 cut(s) 114, 831, 919, 1245
FaeI CATG 6 cut(s) 210, 313, 625, 835, 934, 1249
FalI AAGNNNNNCTT 2 cut(s) 1073, 1105
FaqI GGGAC 3 cut(s) 76, 490, 532
FatI CATG 6 cut(s) 206, 309, 621, 831, 930, 1245
FblI GTMKAC 1 cut(s) 1000
Fnu4HI GCNGC 6 cut(s) 423, 910, 1014, 1130, 1203, 1206
FokI GGATG 1 cut(s) 722
Fsp4HI GCNGC 6 cut(s) 423, 910, 1014, 1130, 1203, 1206
FspBI CTAG 1 cut(s) 1034
GlaI GCGC 1 cut(s) 112
GluI GCNGC 6 cut(s) 423, 910, 1014, 1130, 1203, 1206
GsaI CCCAGC 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 1118
HaeIII GGCC 3 cut(s) 498, 830, 1250
HapII CCGG 3 cut(s) 980, 1049, 1251
HhaI GCGC 1 cut(s) 113
Hin1II CATG 6 cut(s) 210, 313, 625, 835, 934, 1249
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 1082
HinfI GANTC 3 cut(s) 34, 50, 934
HpaII CCGG 3 cut(s) 980, 1049, 1251
HphI GGTGA 2 cut(s) 232, 467
Hpy166II GTNNAC 5 cut(s) 145, 366, 887, 1001, 1225
Hpy188I TCNGA 4 cut(s) 44, 341, 880, 1286
Hpy188III TCNNGA 7 cut(s) 70, 175, 286, 397, 557, 683, 1135
Hpy8I GTNNAC 5 cut(s) 145, 366, 887, 1001, 1225
HpyAV CCTTC 2 cut(s) 364, 554
HpyCH4III ACNGT 2 cut(s) 106, 348
HpyCH4IV ACGT 3 cut(s) 461, 527, 679
HpyF10VI GCNNNNNNNGC 1 cut(s) 303
HpyF3I CTNAG 2 cut(s) 222, 744
HpySE526I ACGT 3 cut(s) 461, 527, 679
Hsp92II CATG 6 cut(s) 210, 313, 625, 835, 934, 1249
HspAI GCGC 1 cut(s) 111
KpnI GGTACC 1 cut(s) 567
Kzo9I GATC 5 cut(s) 66, 72, 586, 867, 1257
LmnI GCTCC 3 cut(s) 311, 842, 1137
Lsp1109I GCAGC 6 cut(s) 434, 896, 1000, 1116, 1192, 1214
LweI GCATC 3 cut(s) 34, 338, 700
MaeI CTAG 1 cut(s) 1034
MaeII ACGT 3 cut(s) 461, 527, 679
MaeIII GTNAC 1 cut(s) 54
MalI GATC 5 cut(s) 68, 74, 588, 869, 1259
MboI GATC 5 cut(s) 66, 72, 586, 867, 1257
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 2 cut(s) 1047, 1227
MlsI TGGCCA 2 cut(s) 498, 830
MluCI AATT 7 cut(s) 333, 369, 417, 636, 863, 1017, 1177
MluNI TGGCCA 2 cut(s) 498, 830
MmeI TCCRAC 3 cut(s) 22, 364, 826
Mox20I TGGCCA 2 cut(s) 498, 830
MroXI GAANNNNTTC 2 cut(s) 449, 636
MscI TGGCCA 2 cut(s) 498, 830
MseI TTAA 2 cut(s) 857, 1181
MslI CAYNNNNRTG 2 cut(s) 620, 1067
Msp20I TGGCCA 2 cut(s) 498, 830
MspA1I CMGCKG 1 cut(s) 1205
MspI CCGG 3 cut(s) 980, 1049, 1251
MspR9I CCNGG 4 cut(s) 827, 981, 1049, 1252
MunI CAATTG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 942
MvaI CCWGG 1 cut(s) 827
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 303
NciI CCSGG 3 cut(s) 981, 1049, 1252
NcoI CCATGG 2 cut(s) 831, 1245
NdeII GATC 5 cut(s) 66, 72, 586, 867, 1257
NlaIII CATG 6 cut(s) 210, 313, 625, 835, 934, 1249
NlaIV GGNNCC 3 cut(s) 307, 565, 1044
PaeR7I CTCGAG 1 cut(s) 257
PctI GAATGC 1 cut(s) 942
PdmI GAANNNNTTC 2 cut(s) 449, 636
PfeI GAWTC 3 cut(s) 34, 50, 934
PflMI CCANNNNNTGG 1 cut(s) 161
PfoI TCCNGGA 1 cut(s) 979
PkrI GCNGC 6 cut(s) 424, 911, 1015, 1131, 1204, 1207
Ppu21I YACGTR 2 cut(s) 462, 528
Psp6I CCWGG 1 cut(s) 825
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 1 cut(s) 825
PspN4I GGNNCC 3 cut(s) 307, 565, 1044
PspPI GGNCC 2 cut(s) 884, 977
PspXI VCTCGAGB 1 cut(s) 257
PstI CTGCAG 1 cut(s) 914
PsuI RGATCY 1 cut(s) 586
PvuII CAGCTG 1 cut(s) 1205
RsaI GTAC 4 cut(s) 350, 565, 837, 1268
RsaNI GTAC 4 cut(s) 349, 564, 836, 1267
RseI CAYNNNNRTG 2 cut(s) 620, 1067
SaqAI TTAA 2 cut(s) 857, 1181
SatI GCNGC 6 cut(s) 423, 910, 1014, 1130, 1203, 1206
Sau3AI GATC 5 cut(s) 66, 72, 586, 867, 1257
Sau96I GGNCC 2 cut(s) 884, 977
ScrFI CCNGG 4 cut(s) 827, 981, 1049, 1252
SduI GDGCHC 2 cut(s) 1047, 1227
SfaNI GCATC 3 cut(s) 34, 338, 700
SfcI CTRYAG 2 cut(s) 300, 910
Sfr274I CTCGAG 1 cut(s) 257
SinI GGWCC 2 cut(s) 884, 977
SlaI CTCGAG 1 cut(s) 257
SmiMI CAYNNNNRTG 2 cut(s) 620, 1067
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SpeI ACTAGT 1 cut(s) 1033
Sse9I AATT 7 cut(s) 333, 369, 417, 636, 863, 1017, 1177
SsiI CCGC 2 cut(s) 20, 77
SspMI CTAG 1 cut(s) 1034
StyD4I CCNGG 4 cut(s) 825, 979, 1047, 1250
StyI CCWWGG 4 cut(s) 114, 831, 919, 1245
TaaI ACNGT 2 cut(s) 106, 348
TaiI ACGT 3 cut(s) 464, 530, 682
TaqI TCGA 3 cut(s) 258, 443, 1117
TasI AATT 7 cut(s) 333, 369, 417, 636, 863, 1017, 1177
TfiI GAWTC 3 cut(s) 34, 50, 934
Tru1I TTAA 2 cut(s) 857, 1181
Tru9I TTAA 2 cut(s) 857, 1181
TscAI CASTG 4 cut(s) 166, 414, 506, 907
TseI GCWGC 6 cut(s) 422, 909, 1013, 1129, 1202, 1205
TspDTI ATGAA 3 cut(s) 480, 672, 681
TspGWI ACGGA 3 cut(s) 630, 927, 1018
TspRI CASTG 4 cut(s) 166, 414, 506, 907
Van91I CCANNNNNTGG 1 cut(s) 161
VneI GTGCAC 1 cut(s) 1223
VpaK11BI GGWCC 2 cut(s) 884, 977
XagI CCTNNNNNAGG 1 cut(s) 558
XapI RAATTY 2 cut(s) 636, 1177
XcmI CCANNNNNNNNNTGG 1 cut(s) 1243
XhoI CTCGAG 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 1000
XmnI GAANNNNTTC 2 cut(s) 449, 636
XspI CTAG 1 cut(s) 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.