Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003304

Physical Location & Seq

Genomic Coordinates Forward (+)

2983871 .. 2988572

Gene Structure 4702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0037900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGATTGACGATAATATTCGTATATATCAAAAAAGCAGTCACAGCCAGCAAAAATTTCCTTTAAATATCCGAAAGTCTCTCACTTTTGTCATTTGCTTCTTCTTCTTGTGGGTCAGCTTTTGGTTTCAACTTTCAAGCAGTTTTCTGGTAAAGATGGTGGAAGAGAAGGCTTGGATTGCAAAAGATGTTACTGAATTGGTTGGCAACACGCCATTGGTGTATCTCAACCATGTCGTAGATGGCTGTGTGGCACGGGTTGCTGCTAAGCTGGAGATGATGGAGCCTTGCTCTAGCGTCAAGGATAGGATTGGATACAGTATGATCACAGATGCTGAGGAGAAGGGTCTTATTAAGGCTGGTGAGAGTGTCCTGGTCGAGCCTACTAGTGGCAATACTGGCATAGGATTGGCGTTTATGGCCGCTGCTAAGGGTTACAAACTAATAATCACCATGCCTGCTTCAATGAGTCTTGAAAGACGAACCATTCTTCTAGGTTTTGGAGCTGAGCTTGTTCTCACAGATCCCGCCAAAGGCATGAAGGGGGCTGTTCAGAAGGCACAAGAGATAGTGGACAAGACACCCAATGCTTATATGCTTCAGCAATTTGAGAACCCTGCAAACCCAAAGGTACATTATGAAACTACTGGACCAGAGATCTGGAGAGGCTCTGCTGGTAAAGTCGACGCCTTTATTTCTGGGATAGGGACTGGAGGTACAATAACAGGTGCTGGGAAGTACCTCAAAGAGCAAAATCCTGATGTTAAGCTCTACGGTGTAGAACCAGTTGAAAGTGCTGTCTTGTCTGGAGGGCGACCTGGCCCTCACAAGATTCAAGGAATTGGTGCTGGCTTCATCCCTGGAGTTTTAGATGTCAGCCTAATTGATGAAGTTATCCAAATATCAAGTGAAGAAGCAATTGAAACAGCCAAGCGTCTAGCATTGAAGGAAGGTTTGTTGGTAGGGATATCATCTGGTGCTGCAGCTGCAGCTGCTATTGAGATTGCAAGGAGGCCAGCAAACGCTGGAAAGCTCATTGTTGTGGTCTTCCCCAGCTTTGGAGAGCGTTACCTCTCCTCTGTATTGTTTGAATCTGTGAAGCGGGAGGCAGAGAACATGGTTTTTGAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

376

Amino Acids

40.61

Weight (kDa)

6.19

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	63 - 350	6.9e-73	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01990
fragaria_vesca	FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330
malus_domestica	MD04G1178500.v1.1 MD12G1194000.v1.1
prunus_persica	Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1
pyrus_communis	pycom04g15750 pycom12g18020
rosa_chinensis	RchiOBHm_Chr3g0459731 RchiOBHm_Chr4g0399931
rosa_laevigata	RLG00000021505 RLG00000025062 RLG00000028723
rosa_multiflora	Rmu_sc0000240.1_g000034
rosa_roxburghii	Rroxscaffold_3G00242630 Rroxscaffold_6G00420020
rosa_rugosa	Rorug03G0037900 Rorug03G0037900 Rorug03G0038000.1 Rorug03G0038100
rosa_samantha	Rh1AG210400 Rh3AG096400 Rh3BG099100 Rh3CG101000 Rh3DG100400
rosa_wichuraiana	Rw4G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	681
AciI	CCGC	3 cut(s)	420, 525, 1099
AclWI	GGATC	1 cut(s)	515
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	684
AfaI	GTAC	3 cut(s)	630, 715, 737
AfiI	CCNNNNNNNGG	3 cut(s)	386, 530, 1055
AgsI	TTSAA	9 cut(s)	128, 135, 462, 473, 788, 833, 920, 943, 1088
AhlI	ACTAGT	1 cut(s)	383
AjnI	CCWGG	3 cut(s)	369, 814, 856
AluBI	AGCT	9 cut(s)	117, 268, 503, 508, 766, 983, 989, 1030, 1053
AluI	AGCT	9 cut(s)	117, 268, 503, 508, 766, 983, 989, 1030, 1053
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	515
AlwNI	CAGNNNCTG	2 cut(s)	332, 728
AoxI	GGCC	3 cut(s)	417, 817, 1010
ApeKI	GCWGC	7 cut(s)	260, 422, 977, 980, 983, 986, 989
ApoI	RAATTY	1 cut(s)	53
ArsI	GACNNNNNNTTYG	2 cut(s)	22, 54
AspS9I	GGNCC	2 cut(s)	647, 818
AsuHPI	GGTGA	2 cut(s)	371, 439
AvaII	GGWCC	1 cut(s)	647
BanII	GRGCYC	1 cut(s)	1128
BbsI	GAAGAC	1 cut(s)	1036
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	7 cut(s)	247, 409, 964, 970, 976, 992, 998
BccI	CCATC	3 cut(s)	148, 233, 271
BciT130I	CCWGG	3 cut(s)	371, 816, 858
BciVI	GTATCC	1 cut(s)	305
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	81
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	4 cut(s)	291, 384, 491, 935
BfmI	CTRYAG	2 cut(s)	978, 984
BfuI	GTATCC	1 cut(s)	305
BglII	AGATCT	1 cut(s)	654
BisI	GCNGC	8 cut(s)	261, 420, 423, 978, 981, 984, 987, 990
BlpI	GCTNAGC	2 cut(s)	264, 504
BlsI	GCNGC	8 cut(s)	262, 421, 424, 979, 982, 985, 988, 991
Bme1390I	CCNGG	3 cut(s)	371, 816, 858
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	2 cut(s)	647, 818
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	3 cut(s)	371, 816, 858
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	1036
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpmI	CTGGAG	5 cut(s)	290, 679, 729, 825, 879
Bpu10I	CCTNAGC	2 cut(s)	333, 426
Bpu1102I	GCTNAGC	2 cut(s)	264, 504
BsaHI	GRCGYC	1 cut(s)	684
BsaJI	CCNNGG	1 cut(s)	856
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 530, 1055
Bse1I	ACTGG	4 cut(s)	400, 649, 712, 782
BseBI	CCWGG	3 cut(s)	371, 816, 858
BseDI	CCNNGG	1 cut(s)	856
BseGI	GGATG	1 cut(s)	852
BseLI	CCNNNNNNNGG	3 cut(s)	386, 530, 1055
BseMII	CTCAG	2 cut(s)	324, 495
BseNI	ACTGG	4 cut(s)	400, 649, 712, 782
BseRI	GAGGAG	2 cut(s)	350, 1063
BseXI	GCAGC	7 cut(s)	247, 409, 964, 970, 976, 992, 998
BseYI	CCCAGC	2 cut(s)	728, 1049
BshFI	GGCC	3 cut(s)	419, 819, 1012
BslFI	GGGAC	1 cut(s)	718
BslI	CCNNNNNNNGG	3 cut(s)	386, 530, 1055
BsmAI	GTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	718
BsnI	GGCC	3 cut(s)	419, 819, 1012
Bsp1286I	GDGCHC	1 cut(s)	1128
Bsp143I	GATC	3 cut(s)	321, 520, 654
Bsp1720I	GCTNAGC	2 cut(s)	264, 504
BspACI	CCGC	3 cut(s)	420, 525, 1099
BspANI	GGCC	3 cut(s)	419, 819, 1012
BspCNI	CTCAG	2 cut(s)	325, 496
BspLI	GGNNCC	1 cut(s)	282
BspMAI	CTGCAG	2 cut(s)	982, 988
BspPI	GGATC	1 cut(s)	515
BsrI	ACTGG	4 cut(s)	400, 649, 712, 782
BssECI	CCNNGG	1 cut(s)	856
BssMI	GATC	3 cut(s)	321, 520, 654
BssNI	GRCGYC	1 cut(s)	684
Bst2UI	CCWGG	3 cut(s)	371, 816, 858
Bst4CI	ACNGT	2 cut(s)	317, 773
Bst6I	CTCTTC	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	684
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	4 cut(s)	47, 456, 847, 1014
BstDEI	CTNAG	4 cut(s)	264, 333, 426, 504
BstF5I	GGATG	1 cut(s)	852
BstKTI	GATC	3 cut(s)	324, 523, 657
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	3 cut(s)	321, 520, 654
BstMWI	GCNNNNNNNGC	8 cut(s)	42, 176, 257, 396, 416, 983, 986, 989
BstNI	CCWGG	3 cut(s)	371, 816, 858
BstSCI	CCNGG	3 cut(s)	369, 814, 856
BstSFI	CTRYAG	2 cut(s)	978, 984
BstV1I	GCAGC	7 cut(s)	247, 409, 964, 970, 976, 992, 998
BstV2I	GAAGAC	1 cut(s)	1036
BstX2I	RGATCY	2 cut(s)	520, 654
BstXI	CCANNNNNNTGG	1 cut(s)	657
BstYI	RGATCY	2 cut(s)	520, 654
BsuI	GTATCC	1 cut(s)	305
BsuRI	GGCC	3 cut(s)	419, 819, 1012
BtsCI	GGATG	1 cut(s)	852
Cac8I	GCNNGC	4 cut(s)	47, 456, 847, 1014
CaiI	CAGNNNCTG	2 cut(s)	332, 728
Cfr13I	GGNCC	2 cut(s)	647, 818
CseI	GACGC	3 cut(s)	283, 692, 920
Csp6I	GTAC	3 cut(s)	629, 714, 736
CviAII	CATG	4 cut(s)	230, 451, 535, 1114
CviQI	GTAC	3 cut(s)	629, 714, 736
DdeI	CTNAG	4 cut(s)	264, 333, 426, 504
DpnI	GATC	3 cut(s)	323, 522, 656
DpnII	GATC	3 cut(s)	321, 520, 654
DraI	TTTAAA	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	1128
Eco32I	GATATC	1 cut(s)	966
Eco47I	GGWCC	1 cut(s)	647
Eco57I	CTGAAG	1 cut(s)	581
EcoRII	CCWGG	3 cut(s)	369, 814, 856
EcoRV	GATATC	1 cut(s)	966
EcoT38I	GRGCYC	1 cut(s)	1128
FaeI	CATG	4 cut(s)	233, 454, 538, 1117
FaqI	GGGAC	1 cut(s)	718
FatI	CATG	4 cut(s)	229, 450, 534, 1113
FauI	CCCGC	2 cut(s)	532, 1092
FbaI	TGATCA	1 cut(s)	321
FblI	GTMKAC	1 cut(s)	681
Fnu4HI	GCNGC	8 cut(s)	261, 420, 423, 978, 981, 984, 987, 990
FokI	GGATG	1 cut(s)	839
FriOI	GRGCYC	1 cut(s)	1128
Fsp4HI	GCNGC	8 cut(s)	261, 420, 423, 978, 981, 984, 987, 990
FspBI	CTAG	4 cut(s)	291, 384, 491, 935
GluI	GCNGC	8 cut(s)	261, 420, 423, 978, 981, 984, 987, 990
GsaI	CCCAGC	2 cut(s)	732, 1053
GsuI	CTGGAG	5 cut(s)	290, 679, 729, 825, 879
HaeIII	GGCC	3 cut(s)	419, 819, 1012
HgaI	GACGC	3 cut(s)	283, 692, 920
Hin1I	GRCGYC	1 cut(s)	684
Hin1II	CATG	4 cut(s)	233, 454, 538, 1117
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	3 cut(s)	466, 829, 1088
HphI	GGTGA	2 cut(s)	371, 439
Hpy166II	GTNNAC	2 cut(s)	571, 682
Hpy188I	TCNGA	2 cut(s)	71, 552
Hpy188III	TCNNGA	4 cut(s)	470, 658, 755, 804
Hpy8I	GTNNAC	2 cut(s)	571, 682
Hpy99I	CGWCG	1 cut(s)	686
HpyAV	CCTTC	6 cut(s)	160, 334, 532, 547, 937, 941
HpyCH4III	ACNGT	2 cut(s)	317, 773
HpyCH4V	TGCA	5 cut(s)	179, 617, 980, 986, 1004
HpyF10VI	GCNNNNNNNGC	8 cut(s)	42, 176, 257, 396, 416, 983, 986, 989
HpyF3I	CTNAG	4 cut(s)	264, 333, 426, 504
Hsp92I	GRCGYC	1 cut(s)	684
Hsp92II	CATG	4 cut(s)	233, 454, 538, 1117
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	321, 520, 654
LmnI	GCTCC	2 cut(s)	280, 500
Lsp1109I	GCAGC	7 cut(s)	247, 409, 964, 970, 976, 992, 998
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	4 cut(s)	291, 384, 491, 935
MaeIII	GTNAC	4 cut(s)	38, 187, 431, 1064
MalI	GATC	3 cut(s)	323, 522, 656
MboI	GATC	3 cut(s)	321, 520, 654
MboII	GAAGA	6 cut(s)	91, 94, 173, 479, 920, 1036
MfeI	CAATTG	1 cut(s)	915
MflI	RGATCY	2 cut(s)	520, 654
MhlI	GDGCHC	1 cut(s)	1128
MluCI	AATT	6 cut(s)	53, 194, 602, 837, 879, 915
MlyI	GAGTC	1 cut(s)	475
MseI	TTAA	3 cut(s)	62, 351, 762
MslI	CAYNNNNRTG	1 cut(s)	1037
MspA1I	CMGCKG	3 cut(s)	422, 983, 989
MspR9I	CCNGG	3 cut(s)	371, 816, 858
MunI	CAATTG	1 cut(s)	915
MvaI	CCWGG	3 cut(s)	371, 816, 858
MwoI	GCNNNNNNNGC	8 cut(s)	42, 176, 257, 396, 416, 983, 986, 989
NdeII	GATC	3 cut(s)	321, 520, 654
NlaIII	CATG	4 cut(s)	233, 454, 538, 1117
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	829, 1088
PkrI	GCNGC	8 cut(s)	262, 421, 424, 979, 982, 985, 988, 991
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
Psp6I	CCWGG	3 cut(s)	369, 814, 856
PspFI	CCCAGC	2 cut(s)	728, 1049
PspGI	CCWGG	3 cut(s)	369, 814, 856
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	2 cut(s)	647, 818
PstI	CTGCAG	2 cut(s)	982, 988
PstNI	CAGNNNCTG	2 cut(s)	332, 728
PsuI	RGATCY	2 cut(s)	520, 654
PvuII	CAGCTG	2 cut(s)	983, 989
RsaI	GTAC	3 cut(s)	630, 715, 737
RsaNI	GTAC	3 cut(s)	629, 714, 736
RseI	CAYNNNNRTG	1 cut(s)	1037
SalI	GTCGAC	1 cut(s)	680
SaqAI	TTAA	3 cut(s)	62, 351, 762
SatI	GCNGC	8 cut(s)	261, 420, 423, 978, 981, 984, 987, 990
Sau3AI	GATC	3 cut(s)	321, 520, 654
Sau96I	GGNCC	2 cut(s)	647, 818
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	3 cut(s)	371, 816, 858
SduI	GDGCHC	1 cut(s)	1128
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	2 cut(s)	978, 984
SinI	GGWCC	1 cut(s)	647
SmiMI	CAYNNNNRTG	1 cut(s)	1037
SpeI	ACTAGT	1 cut(s)	383
Sse9I	AATT	6 cut(s)	53, 194, 602, 837, 879, 915
SsiI	CCGC	3 cut(s)	420, 525, 1099
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	4 cut(s)	291, 384, 491, 935
StyD4I	CCNGG	3 cut(s)	369, 814, 856
TaaI	ACNGT	2 cut(s)	317, 773
TaqI	TCGA	2 cut(s)	375, 681
TasI	AATT	6 cut(s)	53, 194, 602, 837, 879, 915
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	2 cut(s)	829, 1088
Tru1I	TTAA	3 cut(s)	62, 351, 762
Tru9I	TTAA	3 cut(s)	62, 351, 762
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	7 cut(s)	260, 422, 977, 980, 983, 986, 989
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	4 cut(s)	551, 651, 841, 900
VpaK11BI	GGWCC	1 cut(s)	647
XapI	RAATTY	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	681
XspI	CTAG	4 cut(s)	291, 384, 491, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.