Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003304

Physical Location & Seq

Genomic Coordinates Reverse (-)

75974022 .. 75975699

Gene Structure 1678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021505

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTCGAGTGGTGGTTTATTACTGCTTTTGTAGTTCTTGGTAGCATATCAGGCTCAATCATAGGTTATATAACCGCATCCATCGTTGGTGCAATCATCCTTTACACATATGTATTTCATATGTTGGCCCCCCCTCCGGAGGGTGCCTTTGACATTGATGAGGTAACTCTCCCAATCAAGAGCCCTAGTGATGGAGAAACACTTGGACAAGTTCCTTTGCTTACACCTGAAGACAAAGAAGAAGAGGAAGAGCAAAAAAATGAAGAGCAAGTTGTAGAAGTCGACTCAAATTCTTCAAAGAAATCCAAGGTTGATTTACTTTCCAAGCGGTCTAATTTTAATTGTATTGGTGATTGGGTTGTGGAGGCCACTGTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

127

Amino Acids

13.92

Weight (kDa)

4.29

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01990
fragaria_vesca	FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330 FvH4_6g09330
malus_domestica	MD04G1178500.v1.1 MD12G1194000.v1.1
prunus_persica	Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1 Prupe.6G298500_v2.0.a1
pyrus_communis	pycom04g15750 pycom12g18020
rosa_chinensis	RchiOBHm_Chr3g0459731 RchiOBHm_Chr4g0399931
rosa_laevigata	RLG00000021505 RLG00000025062 RLG00000028723
rosa_multiflora	Rmu_sc0000240.1_g000034
rosa_roxburghii	Rroxscaffold_3G00242630 Rroxscaffold_6G00420020
rosa_rugosa	Rorug03G0037900 Rorug03G0037900 Rorug03G0038000.1 Rorug03G0038100
rosa_samantha	Rh1AG210400 Rh3AG096400 Rh3BG099100 Rh3CG101000 Rh3DG100400
rosa_wichuraiana	Rw4G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	282
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	2 cut(s)	75, 328
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	4 cut(s)	136, 139, 140, 191
AgsI	TTSAA	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	5
Aor13HI	TCCGGA	1 cut(s)	136
AoxI	GGCC	2 cut(s)	126, 366
ApoI	RAATTY	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	237
BccI	CCATC	2 cut(s)	89, 185
BfaI	CTAG	1 cut(s)	186
BmeT110I	CYCGRG	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	2 cut(s)	129, 145
BmsI	GCATC	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 139, 140, 191
BseAI	TCCGGA	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	77, 96
BseLI	CCNNNNNNNGG	4 cut(s)	136, 139, 140, 191
BshFI	GGCC	2 cut(s)	128, 368
BshNI	GGYRCC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	4 cut(s)	136, 139, 140, 191
BsnI	GGCC	2 cut(s)	128, 368
BsoBI	CYCGRG	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp13I	TCCGGA	1 cut(s)	136
BspACI	CCGC	2 cut(s)	75, 328
BspANI	GGCC	2 cut(s)	128, 368
BspEI	TCCGGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	129, 145
BspQI	GCTCTTC	2 cut(s)	243, 258
BspT107I	GGYRCC	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	3 cut(s)	237, 243, 258
BstF5I	GGATG	2 cut(s)	77, 96
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	128, 368
BtsCI	GGATG	2 cut(s)	77, 96
BtsIMutI	CAGTG	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	127
CviJI	RGCY	4 cut(s)	54, 128, 183, 368
CviKI_1	RGCY	4 cut(s)	54, 128, 183, 368
Eam1104I	CTCTTC	3 cut(s)	237, 243, 258
EarI	CTCTTC	3 cut(s)	237, 243, 258
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	306
FaiI	YATR	8 cut(s)	47, 62, 69, 71, 109, 111, 120, 122
FauNDI	CATATG	2 cut(s)	109, 120
FblI	GTMKAC	1 cut(s)	282
FokI	GGATG	2 cut(s)	64, 83
FriOI	GRGCYC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	128, 368
HapII	CCGG	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188III	TCNNGA	2 cut(s)	137, 178
Hpy8I	GTNNAC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
Kpn2I	TCCGGA	1 cut(s)	136
LguI	GCTCTTC	2 cut(s)	243, 258
LpnPI	CCDG	3 cut(s)	36, 150, 240
LweI	GCATC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	163
MboII	GAAGA	6 cut(s)	242, 251, 254, 260, 275, 285
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	3 cut(s)	289, 334, 340
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	5 cut(s)	133, 144, 154, 238, 358
MroI	TCCGGA	1 cut(s)	136
MseI	TTAA	1 cut(s)	339
MspI	CCGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeI	CATATG	2 cut(s)	109, 120
NlaIV	GGNNCC	2 cut(s)	129, 145
PaeR7I	CTCGAG	1 cut(s)	5
PciSI	GCTCTTC	2 cut(s)	243, 258
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	129, 145
PspPI	GGNCC	1 cut(s)	127
PspXI	VCTCGAGB	1 cut(s)	5
SalI	GTCGAC	1 cut(s)	281
SapI	GCTCTTC	2 cut(s)	243, 258
SaqAI	TTAA	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	4 cut(s)	67, 165, 229, 312
SfaNI	GCATC	1 cut(s)	86
Sfr274I	CTCGAG	1 cut(s)	5
SlaI	CTCGAG	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	3 cut(s)	289, 334, 340
SsiI	CCGC	2 cut(s)	75, 328
SspMI	CTAG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	373
TaqI	TCGA	2 cut(s)	6, 282
TasI	AATT	3 cut(s)	289, 334, 340
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	376
TspDTI	ATGAA	2 cut(s)	107, 276
TspRI	CASTG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	289
XhoI	CTCGAG	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.