Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005189

Physical Location & Seq

Genomic Coordinates Forward (+)

6524455 .. 6526174

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTACTCTTAAGCTCTTGTTCTCCCTTGTTGTTCTCACTTCCATGCTCTCCATTCATCATGCATCTTATTCTTCTTTTGAAGGTAGCGGCATCAATGTCCTTGAATCCAATAAAGTTAACCTCTCTCTGTACTATGAATCTCTATGCCCGGCCTGTAGGAGCTTCATTGTAGATGAACTAGCAGCTGCGTTATTTGATCCCGACAAGGATCTCATAAGCATTACCAACCTCAGGCTAGTTCCATATGGAAATGCTCATGTTCAAGCACCTAACCAGACCGTCGTTTGCCAGCATGGCCCAGACGAATGCTACTTCAACAGTATAGAAGCCTGTGCAATCGACCTCTGGTTAGACGTGAAGCAGCATTTCGACCTCATTCATTGTATTGAGAAGAAGCTCAGTGATGAAGGGATTCAAGAGTCAAAAGAACAAACTTGGCAATCTTGTTGTGGAGAACTTAAGATGGATCCGGATGGTTTGGGAAAATGCTACAGCAGTGGATATGAGAAGCAGCTAATACTAAGAGATGCTAACGAAACAGACGACCTTGTTCCGCCTCATGAGTACGTGCCATGGGTTGTTGTTAATGGACAACCGCTGAAGGGGGATTACCAAAACTTTGTGAGCCATGTCTGCGAGGCGTACAAAGACAGTCCAAAACCAAAGGCTTGTGCATCACTTCCACATACCATGAACTCAGGTGGAGAGGCAAACTCGACACTCGAAGGATGCTATAAAGGTGACCGCGGGGGGAGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0002376 GO:0002474 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005775 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008285 GO:0009987 GO:0010033 GO:0015036 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019221 GO:0019882 GO:0019884 GO:0019886 GO:0023052 GO:0030054 GO:0031647 GO:0031974 GO:0034097 GO:0034341 GO:0042127 GO:0042221 GO:0042590 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0047134 GO:0048002 GO:0048145 GO:0048147 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051716 GO:0055114 GO:0060333 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071346

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT SapA

Protein Analysis

255

Amino Acids

28.02

Weight (kDa)

4.89

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	41 - 152	7.3e-29	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005189)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10880 FvH4_6g10910
malus_domestica	MD04G1163800.v1.1
prunus_persica	Prupe.6G283100_v2.0.a1
pyrus_communis	pycom04g14630
rosa_chinensis	RchiOBHm_Chr3g0462101 RchiOBHm_Chr3g0462161 RchiOBHm_Chr5g0067031 RchiOBHm_Chr5g0067041
rosa_laevigata	RLG00000024880
rosa_multiflora	Rmu_sc0006583.1_g000007
rosa_roxburghii	Rroxscaffold_1G00014070 Rroxscaffold_4G00297620 Rroxscaffold_6G00417710 Rroxscaffold_6G00417730
rosa_rugosa	Rorug03G0054600 Rorug03G0054600 Rorug03G0054600 Rorug03G0054700
rosa_samantha	Rh3AG113200 Rh3AG113400 Rh3CG118900 Rh3CG119200 Rh3DG118000 Rh3DG118300 Rh5AG440800 Rh5DG473100
rosa_wichuraiana	Rw3G009550 Rw3G009570 Rw5G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	750
AccIII	TCCGGA	1 cut(s)	472
AciI	CCGC	5 cut(s)	90, 557, 599, 748, 750
AclWI	GGATC	4 cut(s)	194, 219, 464, 477
AcuI	CTGAAG	1 cut(s)	623
AfaI	GTAC	3 cut(s)	134, 569, 647
AfiI	CCNNNNNNNGG	2 cut(s)	234, 605
AflII	CTTAAG	2 cut(s)	11, 461
AgsI	TTSAA	5 cut(s)	83, 107, 266, 319, 419
AjiI	CACGTC	1 cut(s)	358
AluBI	AGCT	6 cut(s)	16, 165, 188, 400, 517, 759
AluI	AGCT	6 cut(s)	16, 165, 188, 400, 517, 759
Alw21I	GWGCWC	1 cut(s)	761
AlwI	GGATC	4 cut(s)	194, 219, 464, 477
Aor13HI	TCCGGA	1 cut(s)	472
AoxI	GGCC	2 cut(s)	153, 298
ApeKI	GCWGC	4 cut(s)	185, 188, 364, 514
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	755
AxyI	CCTNAGG	1 cut(s)	233
BamHI	GGATCC	1 cut(s)	469
BanII	GRGCYC	1 cut(s)	761
BarI	GAAGNNNNNNTAC	2 cut(s)	596, 628
Bbv12I	GWGCWC	1 cut(s)	761
BbvI	GCAGC	4 cut(s)	175, 197, 376, 526
BccI	CCATC	2 cut(s)	460, 470
BcnI	CCSGG	1 cut(s)	152
BfaI	CTAG	2 cut(s)	182, 239
BfmI	CTRYAG	2 cut(s)	157, 493
BfrI	CTTAAG	2 cut(s)	11, 461
BglI	GCCNNNNNGGC	1 cut(s)	297
BisI	GCNGC	5 cut(s)	91, 186, 189, 365, 515
BlsI	GCNGC	5 cut(s)	92, 187, 190, 366, 516
Bme1390I	CCNGG	1 cut(s)	152
BmgBI	CACGTC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	5 cut(s)	74, 102, 520, 686, 722
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
BpuMI	CCSGG	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	571
BsaJI	CCNNGG	2 cut(s)	575, 748
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 605
Bse21I	CCTNAGG	1 cut(s)	233
BseAI	TCCGGA	1 cut(s)	472
BseDI	CCNNGG	2 cut(s)	575, 748
BseGI	GGATG	2 cut(s)	481, 737
BseLI	CCNNNNNNNGG	2 cut(s)	234, 605
BseMII	CTCAG	3 cut(s)	247, 415, 714
BseXI	GCAGC	4 cut(s)	175, 197, 376, 526
Bsh1236I	CGCG	1 cut(s)	750
BshFI	GGCC	2 cut(s)	155, 300
BsiHKAI	GWGCWC	1 cut(s)	761
BsiSI	CCGG	2 cut(s)	152, 473
BslI	CCNNNNNNNGG	2 cut(s)	234, 605
BsmI	GAATGC	1 cut(s)	314
BsnI	GGCC	2 cut(s)	155, 300
Bsp1286I	GDGCHC	1 cut(s)	761
Bsp13I	TCCGGA	1 cut(s)	472
Bsp143I	GATC	3 cut(s)	199, 211, 469
Bsp19I	CCATGG	1 cut(s)	575
BspACI	CCGC	5 cut(s)	90, 557, 599, 748, 750
BspANI	GGCC	2 cut(s)	155, 300
BspCNI	CTCAG	3 cut(s)	246, 414, 713
BspEI	TCCGGA	1 cut(s)	472
BspFNI	CGCG	1 cut(s)	750
BspHI	TCATGA	2 cut(s)	562, 761
BspLI	GGNNCC	1 cut(s)	471
BspPI	GGATC	4 cut(s)	194, 219, 464, 477
BspTI	CTTAAG	2 cut(s)	11, 461
BssECI	CCNNGG	2 cut(s)	575, 748
BssMI	GATC	3 cut(s)	199, 211, 469
BssT1I	CCWWGG	1 cut(s)	575
Bst4CI	ACNGT	3 cut(s)	283, 323, 656
BstAFI	CTTAAG	2 cut(s)	11, 461
BstBAI	YACGTR	1 cut(s)	571
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	4 cut(s)	233, 401, 524, 700
BstDSI	CCRYGG	2 cut(s)	575, 748
BstEII	GGTNACC	1 cut(s)	743
BstF5I	GGATG	2 cut(s)	481, 737
BstFNI	CGCG	1 cut(s)	750
BstKTI	GATC	3 cut(s)	202, 214, 472
BstMBI	GATC	3 cut(s)	199, 211, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	297, 636, 756
BstPI	GGTNACC	1 cut(s)	743
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	2 cut(s)	157, 493
BstUI	CGCG	1 cut(s)	750
BstV1I	GCAGC	4 cut(s)	175, 197, 376, 526
BstX2I	RGATCY	2 cut(s)	211, 469
BstYI	RGATCY	2 cut(s)	211, 469
Bsu36I	CCTNAGG	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	155, 300
BtgI	CCRYGG	2 cut(s)	575, 748
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	481, 737
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	2 cut(s)	409, 505
Cac8I	GCNNGC	1 cut(s)	293
CciI	TCATGA	2 cut(s)	562, 761
Cfr13I	GGNCC	1 cut(s)	299
Cfr42I	CCGCGG	1 cut(s)	751
Csp6I	GTAC	3 cut(s)	133, 568, 646
CviAII	CATG	9 cut(s)	46, 62, 260, 296, 563, 576, 632, 694, 762
CviQI	GTAC	3 cut(s)	133, 568, 646
DdeI	CTNAG	4 cut(s)	233, 401, 524, 700
DpnI	GATC	3 cut(s)	201, 213, 471
DpnII	GATC	3 cut(s)	199, 211, 469
EciI	GGCGGA	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	759
Eco130I	CCWWGG	1 cut(s)	575
Eco24I	GRGCYC	1 cut(s)	761
Eco53kI	GAGCTC	1 cut(s)	759
Eco57I	CTGAAG	1 cut(s)	623
Eco81I	CCTNAGG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	743
EcoICRI	GAGCTC	1 cut(s)	759
EcoO65I	GGTNACC	1 cut(s)	743
EcoT14I	CCWWGG	1 cut(s)	575
EcoT22I	ATGCAT	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	761
ErhI	CCWWGG	1 cut(s)	575
FaeI	CATG	9 cut(s)	49, 65, 263, 299, 566, 579, 635, 697, 765
FatI	CATG	9 cut(s)	45, 61, 259, 295, 562, 575, 631, 693, 761
FauI	CCCGC	1 cut(s)	743
FauNDI	CATATG	1 cut(s)	247
Fnu4HI	GCNGC	5 cut(s)	91, 186, 189, 365, 515
FokI	GGATG	2 cut(s)	488, 744
FriOI	GRGCYC	1 cut(s)	761
Fsp4HI	GCNGC	5 cut(s)	91, 186, 189, 365, 515
FspBI	CTAG	2 cut(s)	182, 239
GluI	GCNGC	5 cut(s)	91, 186, 189, 365, 515
HaeIII	GGCC	2 cut(s)	155, 300
HapII	CCGG	2 cut(s)	152, 473
Hin1II	CATG	9 cut(s)	49, 65, 263, 299, 566, 579, 635, 697, 765
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	4 cut(s)	107, 140, 415, 422
HpaI	GTTAAC	1 cut(s)	121
HpaII	CCGG	2 cut(s)	152, 473
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188III	TCNNGA	5 cut(s)	203, 419, 473, 563, 762
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	4 cut(s)	77, 404, 598, 722
HpyCH4III	ACNGT	3 cut(s)	283, 323, 656
HpyCH4IV	ACGT	2 cut(s)	357, 570
HpyCH4V	TGCA	3 cut(s)	65, 338, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	297, 636, 756
HpyF3I	CTNAG	4 cut(s)	233, 401, 524, 700
HpySE526I	ACGT	2 cut(s)	357, 570
Hsp92II	CATG	9 cut(s)	49, 65, 263, 299, 566, 579, 635, 697, 765
Kpn2I	TCCGGA	1 cut(s)	472
KspAI	GTTAAC	1 cut(s)	121
KspI	CCGCGG	1 cut(s)	751
Kzo9I	GATC	3 cut(s)	199, 211, 469
LmnI	GCTCC	2 cut(s)	162, 756
Lsp1109I	GCAGC	4 cut(s)	175, 197, 376, 526
LweI	GCATC	5 cut(s)	74, 102, 520, 686, 722
MaeI	CTAG	2 cut(s)	182, 239
MaeII	ACGT	2 cut(s)	357, 570
MaeIII	GTNAC	1 cut(s)	743
MalI	GATC	3 cut(s)	201, 213, 471
MboI	GATC	3 cut(s)	199, 211, 469
MboII	GAAGA	2 cut(s)	66, 406
MflI	RGATCY	2 cut(s)	211, 469
MhlI	GDGCHC	1 cut(s)	761
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	7 cut(s)	134, 242, 356, 386, 570, 634, 703
Mph1103I	ATGCAT	1 cut(s)	67
MroI	TCCGGA	1 cut(s)	472
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	4 cut(s)	12, 120, 462, 588
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	3 cut(s)	188, 601, 750
MspCI	CTTAAG	2 cut(s)	11, 461
MspI	CCGG	2 cut(s)	152, 473
MspR9I	CCNGG	1 cut(s)	152
Mva1269I	GAATGC	1 cut(s)	314
MvnI	CGCG	1 cut(s)	750
MwoI	GCNNNNNNNGC	3 cut(s)	297, 636, 756
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	575
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	3 cut(s)	199, 211, 469
NlaIII	CATG	9 cut(s)	49, 65, 263, 299, 566, 579, 635, 697, 765
NlaIV	GGNNCC	1 cut(s)	471
NmuCI	GTSAC	1 cut(s)	743
NsiI	ATGCAT	1 cut(s)	67
PagI	TCATGA	2 cut(s)	562, 761
PcsI	WCGNNNNNNNCGW	1 cut(s)	543
PctI	GAATGC	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	107, 140, 415
PkrI	GCNGC	5 cut(s)	92, 187, 190, 366, 516
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	571
Psp124BI	GAGCTC	1 cut(s)	761
PspEI	GGTNACC	1 cut(s)	743
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	299
PsuI	RGATCY	2 cut(s)	211, 469
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	3 cut(s)	134, 569, 647
RsaNI	GTAC	3 cut(s)	133, 568, 646
RseI	CAYNNNNRTG	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	761
SacII	CCGCGG	1 cut(s)	751
SaqAI	TTAA	4 cut(s)	12, 120, 462, 588
SatI	GCNGC	5 cut(s)	91, 186, 189, 365, 515
Sau3AI	GATC	3 cut(s)	199, 211, 469
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	761
SfaNI	GCATC	5 cut(s)	74, 102, 520, 686, 722
SfcI	CTRYAG	2 cut(s)	157, 493
Sfr303I	CCGCGG	1 cut(s)	751
SgrBI	CCGCGG	1 cut(s)	751
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	11, 461
SmoI	CTYRAG	2 cut(s)	11, 461
SsiI	CCGC	5 cut(s)	90, 557, 599, 748, 750
SspMI	CTAG	2 cut(s)	182, 239
SstI	GAGCTC	1 cut(s)	761
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	575
TaaI	ACNGT	3 cut(s)	283, 323, 656
TaiI	ACGT	2 cut(s)	360, 573
TaqI	TCGA	4 cut(s)	342, 372, 719, 726
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	3 cut(s)	107, 140, 415
Tru1I	TTAA	4 cut(s)	12, 120, 462, 588
Tru9I	TTAA	4 cut(s)	12, 120, 462, 588
TscAI	CASTG	2 cut(s)	409, 505
TseFI	GTSAC	1 cut(s)	743
TseI	GCWGC	4 cut(s)	185, 188, 364, 514
Tsp45I	GTSAC	1 cut(s)	743
TspDTI	ATGAA	7 cut(s)	47, 153, 157, 192, 371, 423, 710
TspRI	CASTG	2 cut(s)	409, 505
Vha464I	CTTAAG	2 cut(s)	11, 461
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	2 cut(s)	182, 239
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.