Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005189

Physical Location & Seq

Genomic Coordinates Reverse (-)

73108050 .. 73111278

Gene Structure 3229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34277

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAAATGCTCAGGTCAAAGCACCTAACAAGACCATCGTTTGCCAGGTCACATTTCCCTCTCCACCATCTTTATTTATTATATATATATATATATATGTATATATATCTTTTTTCTTTTGTGCTTGGAATCTTGGATAATTATCATTCCATTAATTTGCTTCATATTCTGCAGCATGGCCCAGACGAATGCTACTTTAACAGTATAGAAGCCTGTGCAATCCACCTCTGGTCAGACGTGAAGCGGCATTTCAAGTTCAATCATTGTCTTGAGAGTAAACTTATTGAAGGACTGCAGTCCTCGAAAAAAAATGCTTGGGAATCTTGTTGTGTAAAACTTAAGATGGATTCGGATCGTTTGGGAAAGTGCTACCGCAGTGGATATGAGAAGAAGCAGCTTATACTTCAAAATGCTAAAGAAACAGACCACCTTGTTCCGCCTCATGAGTACGTACCATGGGTGGTTGTTAATGGACAACTGCTAAAGGATGATTACCTAAATTTTGTGAGGTATGTCTGCAACGCTTACAAAGACAGTCCGAAACCAATGGCTTGCAGATCATATCCACACAACATCAATTCAGGTGGAAAGGCAAACTCGAGCCTAGAAGGATGCTATAAAGGTGAAGAACGCGGGGGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0002376 GO:0002474 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005775 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008285 GO:0009987 GO:0010033 GO:0015036 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019221 GO:0019882 GO:0019884 GO:0019886 GO:0023052 GO:0030054 GO:0031647 GO:0031974 GO:0034097 GO:0034341 GO:0042127 GO:0042221 GO:0042590 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0047134 GO:0048002 GO:0048145 GO:0048147 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051716 GO:0055114 GO:0060333 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071346

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT SapA

Protein Analysis

214

Amino Acids

24.96

Weight (kDa)

8.63

Isoelectric Point (pI)

61.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	57 - 111	7e-11	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005189)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10880 FvH4_6g10910
malus_domestica	MD04G1163800.v1.1
prunus_persica	Prupe.6G283100_v2.0.a1
pyrus_communis	pycom04g14630
rosa_chinensis	RchiOBHm_Chr3g0462101 RchiOBHm_Chr3g0462161 RchiOBHm_Chr5g0067031 RchiOBHm_Chr5g0067041
rosa_laevigata	RLG00000024880
rosa_multiflora	Rmu_sc0006583.1_g000007
rosa_roxburghii	Rroxscaffold_1G00014070 Rroxscaffold_4G00297620 Rroxscaffold_6G00417710 Rroxscaffold_6G00417730
rosa_rugosa	Rorug03G0054600 Rorug03G0054600 Rorug03G0054600 Rorug03G0054700
rosa_samantha	Rh3AG113200 Rh3AG113400 Rh3CG118900 Rh3CG119200 Rh3DG118000 Rh3DG118300 Rh5AG440800 Rh5DG473100
rosa_wichuraiana	Rw3G009550 Rw3G009570 Rw5G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	633
AciI	CCGC	4 cut(s)	244, 373, 437, 633
AclWI	GGATC	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	499
AfaI	GTAC	2 cut(s)	449, 453
AflII	CTTAAG	1 cut(s)	338
AgsI	TTSAA	4 cut(s)	253, 259, 287, 407
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	2 cut(s)	397, 642
AluI	AGCT	2 cut(s)	397, 642
AlwI	GGATC	1 cut(s)	360
Ama87I	CYCGRG	1 cut(s)	598
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	2 cut(s)	172, 394
ApoI	RAATTY	1 cut(s)	499
AseI	ATTAAT	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	635
AvaI	CYCGRG	1 cut(s)	598
BbvI	GCAGC	2 cut(s)	184, 406
BccI	CCATC	3 cut(s)	43, 75, 337
BciT130I	CCWGG	1 cut(s)	46
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	2 cut(s)	170, 293
BfrI	CTTAAG	1 cut(s)	338
BisI	GCNGC	3 cut(s)	173, 245, 395
BlsI	GCNGC	3 cut(s)	174, 246, 396
Bme1390I	CCNGG	1 cut(s)	46
BmeT110I	CYCGRG	1 cut(s)	598
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	602
BoxI	GACNNNNGTC	1 cut(s)	295
Bpu10I	CCTNAGC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	451
BsaBI	GATNNNNATC	2 cut(s)	141, 351
BsaJI	CCNNGG	1 cut(s)	455
Bse8I	GATNNNNATC	2 cut(s)	141, 351
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	455
BseGI	GGATG	2 cut(s)	493, 617
BseJI	GATNNNNATC	2 cut(s)	141, 351
BseMII	CTCAG	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	184, 406
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	598
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	598
Bsp143I	GATC	2 cut(s)	352, 557
Bsp19I	CCATGG	1 cut(s)	455
BspACI	CCGC	4 cut(s)	244, 373, 437, 633
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	633
BspHI	TCATGA	1 cut(s)	442
BspMAI	CTGCAG	2 cut(s)	174, 297
BspPI	GGATC	1 cut(s)	360
BspTI	CTTAAG	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	2 cut(s)	352, 557
BssT1I	CCWWGG	1 cut(s)	455
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	203, 536
BstAFI	CTTAAG	1 cut(s)	338
BstBAI	YACGTR	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	1 cut(s)	11
BstDSI	CCRYGG	1 cut(s)	455
BstF5I	GGATG	2 cut(s)	493, 617
BstFNI	CGCG	1 cut(s)	633
BstKTI	GATC	2 cut(s)	355, 560
BstMBI	GATC	2 cut(s)	352, 557
BstMWI	GCNNNNNNNGC	1 cut(s)	639
BstNI	CCWGG	1 cut(s)	46
BstPAI	GACNNNNGTC	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	44
BstSFI	CTRYAG	2 cut(s)	170, 293
BstSNI	TACGTA	1 cut(s)	451
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	2 cut(s)	184, 406
BsuRI	GGCC	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	455
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	493, 617
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	553
CciI	TCATGA	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	448, 452
CspCI	CAANNNNNGTGG	2 cut(s)	565, 600
CviAII	CATG	3 cut(s)	176, 443, 456
CviJI	RGCY	6 cut(s)	180, 212, 397, 551, 603, 642
CviKI_1	RGCY	6 cut(s)	180, 212, 397, 551, 603, 642
CviQI	GTAC	2 cut(s)	448, 452
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	2 cut(s)	354, 559
DpnII	GATC	2 cut(s)	352, 557
EciI	GGCGGA	1 cut(s)	426
Eco105I	TACGTA	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	3 cut(s)	179, 446, 459
FatI	CATG	3 cut(s)	175, 442, 455
FauI	CCCGC	1 cut(s)	626
Fnu4HI	GCNGC	3 cut(s)	173, 245, 395
FokI	GGATG	2 cut(s)	500, 624
Fsp4HI	GCNGC	3 cut(s)	173, 245, 395
FspBI	CTAG	1 cut(s)	605
GluI	GCNGC	3 cut(s)	173, 245, 395
HaeIII	GGCC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	179, 446, 459
HinfI	GANTC	3 cut(s)	129, 320, 347
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	3 cut(s)	235, 352, 540
Hpy188III	TCNNGA	2 cut(s)	269, 443
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	2 cut(s)	281, 602
HpyCH4III	ACNGT	2 cut(s)	203, 536
HpyCH4IV	ACGT	2 cut(s)	237, 450
HpyCH4V	TGCA	5 cut(s)	172, 218, 295, 519, 555
HpyF10VI	GCNNNNNNNGC	1 cut(s)	639
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	2 cut(s)	237, 450
Hsp92II	CATG	3 cut(s)	179, 446, 459
Kzo9I	GATC	2 cut(s)	352, 557
LmnI	GCTCC	1 cut(s)	639
LpnPI	CCDG	6 cut(s)	31, 58, 195, 214, 226, 567
Lsp1109I	GCAGC	2 cut(s)	184, 406
LweI	GCATC	1 cut(s)	602
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	2 cut(s)	237, 450
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	2 cut(s)	354, 559
MboI	GATC	2 cut(s)	352, 557
MboII	GAAGA	2 cut(s)	400, 638
MluCI	AATT	4 cut(s)	139, 154, 499, 577
MnlI	CCTC	5 cut(s)	69, 236, 310, 450, 501
MseI	TTAA	4 cut(s)	153, 198, 339, 468
MspCI	CTTAAG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	46
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	46
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	639
NcoI	CCATGG	1 cut(s)	455
NdeII	GATC	2 cut(s)	352, 557
NlaIII	CATG	3 cut(s)	179, 446, 459
NmuCI	GTSAC	1 cut(s)	48
PaeR7I	CTCGAG	1 cut(s)	598
PagI	TCATGA	1 cut(s)	442
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	3 cut(s)	129, 320, 347
PkrI	GCNGC	3 cut(s)	174, 246, 396
Ppu21I	YACGTR	1 cut(s)	451
PshAI	GACNNNNGTC	1 cut(s)	295
PshBI	ATTAAT	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	179
PspXI	VCTCGAGB	1 cut(s)	598
PstI	CTGCAG	2 cut(s)	174, 297
RsaI	GTAC	2 cut(s)	449, 453
RsaNI	GTAC	2 cut(s)	448, 452
SaqAI	TTAA	4 cut(s)	153, 198, 339, 468
SatI	GCNGC	3 cut(s)	173, 245, 395
Sau3AI	GATC	2 cut(s)	352, 557
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	46
SfaNI	GCATC	1 cut(s)	602
SfcI	CTRYAG	2 cut(s)	170, 293
Sfr274I	CTCGAG	1 cut(s)	598
SlaI	CTCGAG	1 cut(s)	598
SmlI	CTYRAG	3 cut(s)	269, 338, 598
SmoI	CTYRAG	3 cut(s)	269, 338, 598
SnaBI	TACGTA	1 cut(s)	451
Sse9I	AATT	4 cut(s)	139, 154, 499, 577
SsiI	CCGC	4 cut(s)	244, 373, 437, 633
SspMI	CTAG	1 cut(s)	605
StyD4I	CCNGG	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	2 cut(s)	203, 536
TaiI	ACGT	2 cut(s)	240, 453
TaqI	TCGA	2 cut(s)	302, 599
TasI	AATT	4 cut(s)	139, 154, 499, 577
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	3 cut(s)	129, 320, 347
Tru1I	TTAA	4 cut(s)	153, 198, 339, 468
Tru9I	TTAA	4 cut(s)	153, 198, 339, 468
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	2 cut(s)	172, 394
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	382
Vha464I	CTTAAG	1 cut(s)	338
VspI	ATTAAT	1 cut(s)	153
XapI	RAATTY	1 cut(s)	499
XhoI	CTCGAG	1 cut(s)	598
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.