Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005189

Physical Location & Seq

Genomic Coordinates Reverse (-)

72602800 .. 72605543

Gene Structure 2744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G041200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCTTCTCTTAAACTCTTGTTTTCTCTTGTTGTTCTCACTTCCGTGCTCTCCATTCTAGCATCTTATCCTCCTTTTGAAGATAACGGCGTCAATGTCCTTGAATCCAAGAAAGTTAACCTCTCTCTGTATTATGAAACTCTATGCCCATCCTGTGCAAGCTTCATTGTAAATGAACTAGCAGCTAAGTTATTTGATCCCGAAGGGGATCTCATAAGCATTGTCAACCTCAGGCTAGTTCCATATGGAAATGCTCAGGTCAAAGCACCCAACAAGACCATCGTTTGCCAGCCTGGCCCAGACGAATGCTACTTTAACAGTATAGAAGCCTGTGCAATCCACCTCTGGTCAGACGTGAAGCGGCATTTCAAGTTCATTCATTGTCTTGAGAGTAAACTTATTGAAGGACTGCACTCCTCGAAAGAACATGCTTGGGAATCTTGTTGTGTAAAACTTAAGATGGATTCGGATCGTTTGGGAAACTTATACTTCAAAATGCTAAAGAAACAGACCACCTTGTTCCGCCTCATGATCGAGTACGTACCATGGGTGGTTGTTAATGGACAACTGCTAAAGGATGATTACAAAGACAGTCCGAAACCAAAGGCTTGCAGATCATATCCACACAACATCAATTCAGGTGGAAAGGCAAACTCGAGCCTAGAAGGATGCTATAAAGGTGAAGAACGCGGGGGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0002376 GO:0002474 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005775 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008285 GO:0009987 GO:0010033 GO:0015036 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019221 GO:0019882 GO:0019884 GO:0019886 GO:0023052 GO:0030054 GO:0031647 GO:0031974 GO:0034097 GO:0034341 GO:0042127 GO:0042221 GO:0042590 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0047134 GO:0048002 GO:0048145 GO:0048147 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051716 GO:0055114 GO:0060333 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071346

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT SapA

Protein Analysis

233

Amino Acids

26.1

Weight (kDa)

7.98

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	40 - 150	1.1e-27	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005189)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10880 FvH4_6g10910
malus_domestica	MD04G1163800.v1.1
prunus_persica	Prupe.6G283100_v2.0.a1
pyrus_communis	pycom04g14630
rosa_chinensis	RchiOBHm_Chr3g0462101 RchiOBHm_Chr3g0462161 RchiOBHm_Chr5g0067031 RchiOBHm_Chr5g0067041
rosa_laevigata	RLG00000024880
rosa_multiflora	Rmu_sc0006583.1_g000007
rosa_roxburghii	Rroxscaffold_1G00014070 Rroxscaffold_4G00297620 Rroxscaffold_6G00417710 Rroxscaffold_6G00417730
rosa_rugosa	Rorug03G0054600 Rorug03G0054600 Rorug03G0054600 Rorug03G0054700
rosa_samantha	Rh3AG113200 Rh3AG113400 Rh3CG118900 Rh3CG119200 Rh3DG118000 Rh3DG118300 Rh5AG440800 Rh5DG473100
rosa_wichuraiana	Rw3G009550 Rw3G009570 Rw5G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	690
AciI	CCGC	3 cut(s)	361, 523, 690
AclWI	GGATC	3 cut(s)	191, 216, 477
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	2 cut(s)	539, 543
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	5 cut(s)	80, 104, 370, 404, 493
AjiI	CACGTC	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	292
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	3 cut(s)	162, 185, 699
AluI	AGCT	3 cut(s)	162, 185, 699
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	3 cut(s)	191, 216, 477
Ama87I	CYCGRG	1 cut(s)	655
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	692
AvaI	CYCGRG	1 cut(s)	655
AxyI	CCTNAGG	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	3 cut(s)	157, 287, 454
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	294
BfaI	CTAG	4 cut(s)	59, 179, 236, 662
BfrI	CTTAAG	1 cut(s)	455
BglI	GCCNNNNNGGC	1 cut(s)	294
BisI	GCNGC	2 cut(s)	183, 362
BlsI	GCNGC	2 cut(s)	184, 363
Bme1390I	CCNGG	1 cut(s)	294
BmeT110I	CYCGRG	1 cut(s)	655
BmgBI	CACGTC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	2 cut(s)	71, 659
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	407
BsaAI	YACGTR	1 cut(s)	541
BsaBI	GATNNNNATC	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	545
Bse21I	CCTNAGG	1 cut(s)	230
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	545
BseGI	GGATG	3 cut(s)	149, 583, 674
BseJI	GATNNNNATC	1 cut(s)	468
BseMII	CTCAG	2 cut(s)	244, 269
BseRI	GAGGAG	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	395
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	655
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	655
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	5 cut(s)	196, 208, 469, 531, 614
Bsp19I	CCATGG	1 cut(s)	545
BspACI	CCGC	3 cut(s)	361, 523, 690
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	243, 268
BspFNI	CGCG	1 cut(s)	690
BspHI	TCATGA	1 cut(s)	528
BspPI	GGATC	3 cut(s)	191, 216, 477
BspTI	CTTAAG	1 cut(s)	455
BssECI	CCNNGG	1 cut(s)	545
BssMI	GATC	5 cut(s)	196, 208, 469, 531, 614
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	545
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	320, 593
BstACI	GRCGYC	1 cut(s)	90
BstAFI	CTTAAG	1 cut(s)	455
BstBAI	YACGTR	1 cut(s)	541
BstC8I	GCNNGC	3 cut(s)	160, 290, 610
BstDEI	CTNAG	3 cut(s)	186, 230, 255
BstDSI	CCRYGG	1 cut(s)	545
BstF5I	GGATG	3 cut(s)	149, 583, 674
BstFNI	CGCG	1 cut(s)	690
BstKTI	GATC	5 cut(s)	199, 211, 472, 534, 617
BstMBI	GATC	5 cut(s)	196, 208, 469, 531, 614
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 696
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	292
BstSNI	TACGTA	1 cut(s)	541
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	545
BtrI	CACGTC	1 cut(s)	355
BtsCI	GGATG	3 cut(s)	149, 583, 674
Cac8I	GCNNGC	3 cut(s)	160, 290, 610
CciI	TCATGA	1 cut(s)	528
Cfr13I	GGNCC	1 cut(s)	296
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	538, 542
CspCI	CAANNNNNGTGG	2 cut(s)	622, 657
CviAII	CATG	3 cut(s)	428, 529, 546
CviQI	GTAC	2 cut(s)	538, 542
DdeI	CTNAG	3 cut(s)	186, 230, 255
DpnI	GATC	5 cut(s)	198, 210, 471, 533, 616
DpnII	GATC	5 cut(s)	196, 208, 469, 531, 614
EciI	GGCGGA	1 cut(s)	512
Eco105I	TACGTA	1 cut(s)	541
Eco130I	CCWWGG	1 cut(s)	545
Eco81I	CCTNAGG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	655
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	545
ErhI	CCWWGG	1 cut(s)	545
FaeI	CATG	3 cut(s)	431, 532, 549
FatI	CATG	3 cut(s)	427, 528, 545
FauI	CCCGC	1 cut(s)	683
FauNDI	CATATG	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	183, 362
FokI	GGATG	3 cut(s)	136, 590, 681
Fsp4HI	GCNGC	2 cut(s)	183, 362
FspBI	CTAG	4 cut(s)	59, 179, 236, 662
GluI	GCNGC	2 cut(s)	183, 362
HaeIII	GGCC	1 cut(s)	297
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	431, 532, 549
HincII	GTYRAC	2 cut(s)	118, 226
HindII	GTYRAC	2 cut(s)	118, 226
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	3 cut(s)	104, 437, 464
HpaI	GTTAAC	1 cut(s)	118
HphI	GGTGA	1 cut(s)	692
Hpy166II	GTNNAC	3 cut(s)	118, 226, 395
Hpy188I	TCNGA	3 cut(s)	352, 469, 597
Hpy188III	TCNNGA	3 cut(s)	200, 386, 529
Hpy8I	GTNNAC	3 cut(s)	118, 226, 395
HpyAV	CCTTC	3 cut(s)	197, 398, 659
HpyCH4III	ACNGT	2 cut(s)	320, 593
HpyCH4IV	ACGT	2 cut(s)	354, 540
HpyCH4V	TGCA	4 cut(s)	158, 335, 412, 612
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 696
HpyF3I	CTNAG	3 cut(s)	186, 230, 255
HpySE526I	ACGT	2 cut(s)	354, 540
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	431, 532, 549
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	5 cut(s)	196, 208, 469, 531, 614
LmnI	GCTCC	1 cut(s)	696
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	2 cut(s)	71, 659
MaeI	CTAG	4 cut(s)	59, 179, 236, 662
MaeII	ACGT	2 cut(s)	354, 540
MalI	GATC	5 cut(s)	198, 210, 471, 533, 616
MboI	GATC	5 cut(s)	196, 208, 469, 531, 614
MboII	GAAGA	2 cut(s)	92, 695
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	1 cut(s)	634
MnlI	CCTC	6 cut(s)	81, 131, 239, 353, 427, 536
MseI	TTAA	5 cut(s)	12, 117, 315, 456, 558
MslI	CAYNNNNRTG	1 cut(s)	44
MspCI	CTTAAG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	294
Mva1269I	GAATGC	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	2 cut(s)	294, 696
NcoI	CCATGG	1 cut(s)	545
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	5 cut(s)	196, 208, 469, 531, 614
NlaIII	CATG	3 cut(s)	431, 532, 549
NspI	RCATGY	1 cut(s)	431
OliI	CACNNNNGTG	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	655
PagI	TCATGA	1 cut(s)	528
PctI	GAATGC	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	104, 437, 464
PkrI	GCNGC	2 cut(s)	184, 363
Ppu21I	YACGTR	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	296
PspXI	VCTCGAGB	1 cut(s)	655
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	2 cut(s)	539, 543
RsaNI	GTAC	2 cut(s)	538, 542
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	5 cut(s)	12, 117, 315, 456, 558
SatI	GCNGC	2 cut(s)	183, 362
Sau3AI	GATC	5 cut(s)	196, 208, 469, 531, 614
Sau96I	GGNCC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	2 cut(s)	71, 659
Sfr274I	CTCGAG	1 cut(s)	655
SlaI	CTCGAG	1 cut(s)	655
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	3 cut(s)	386, 455, 655
SmoI	CTYRAG	3 cut(s)	386, 455, 655
SnaBI	TACGTA	1 cut(s)	541
Sse9I	AATT	1 cut(s)	634
SsiI	CCGC	3 cut(s)	361, 523, 690
SspMI	CTAG	4 cut(s)	59, 179, 236, 662
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	1 cut(s)	545
TaaI	ACNGT	2 cut(s)	320, 593
TaiI	ACGT	2 cut(s)	357, 543
TaqI	TCGA	3 cut(s)	419, 534, 656
TasI	AATT	1 cut(s)	634
TauI	GCSGC	1 cut(s)	364
TfiI	GAWTC	3 cut(s)	104, 437, 464
Tru1I	TTAA	5 cut(s)	12, 117, 315, 456, 558
Tru9I	TTAA	5 cut(s)	12, 117, 315, 456, 558
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	5 cut(s)	150, 154, 189, 364, 368
TspGWI	ACGGA	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	455
XceI	RCATGY	1 cut(s)	431
XhoI	CTCGAG	1 cut(s)	655
XspI	CTAG	4 cut(s)	59, 179, 236, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.