Rh3DG118000

oxidoreductase activity, acting on a sulfur group of donors

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005189
Physical Location & Seq
Forward (+)
9937450 .. 9938765
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG118000.1

Sequence Viewer

Length: 696 bp
ATGGCTTCTCTTAAGCTCTTGTTTTCCCTTCTTGTTCTCACTTCCGTGCTCTCCATTCAAGCATCTTATCCTTCTTTTGAAGATAACGGCGTCAATGTCCTTGAATCCAAGAAAGTTAACCTCTCTCTGTATTATGAAACTCTATGCCCATCCTGTGCGAGCTTCATTGTAAATGAACTAGCAGCTAAGTTATTCGATCCCGAAGGGGATCTCATAAGCATTGTCAACCTCAGCTGGCTAGTTCCATATGGAAATGCTCAGGTCAAAGCACCTAACAAGACCATCGTTTGCCAGAAGCGGCATTTCAAGTTCATTCATTGTCTTGAGAGTAAACTTATTGAAGGACTGCACTCCTCGAAAGAATATGCTTGGGAATCTTGTTGTGTAAAACTTAAGATGGATTCGGATCGTTTAGGAAAGTGCTACAGCAGTGGATATGAGAAGAAACTTATACATGAAAATGCTAAAGAAACAGACCACCTTGTTCCGCCTCATGAGTACGTACCATGGGTGGTTGTTAATGGACAACCGCTAAAGGATGATTACCTAAATTTTGTGAGGTATATCTGCAACGCTTACAAAGACAGTCCGAAACCAAAGGCTTGCAGATCATATCCACACAACATCAATTCAGGTGGAAAGGCAAACTCGAGCCTGGAAGGATGCTATAAAGGTGAAGAACGCGGGGGGAGCTGA

Protein Analysis

231

Amino Acids

25.89

Weight (kDa)

7.97

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 40 - 99 3.4e-08 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 684
AciI CCGC 4 cut(s) 298, 488, 530, 684
AclWI GGATC 3 cut(s) 191, 216, 414
AcsI RAATTY 1 cut(s) 550
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 2 cut(s) 500, 504
AflII CTTAAG 2 cut(s) 11, 392
AgsI TTSAA 5 cut(s) 59, 80, 104, 307, 341
AjnI CCWGG 1 cut(s) 654
AleI CACNNNNGTG 1 cut(s) 44
AluBI AGCT 5 cut(s) 16, 162, 185, 234, 693
AluI AGCT 5 cut(s) 16, 162, 185, 234, 693
Alw21I GWGCWC 1 cut(s) 51
AlwI GGATC 3 cut(s) 191, 216, 414
Ama87I CYCGRG 1 cut(s) 649
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 550
AsuHPI GGTGA 1 cut(s) 686
AvaI CYCGRG 1 cut(s) 649
Bbv12I GWGCWC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 194
BccI CCATC 3 cut(s) 157, 290, 391
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 656
BfaI CTAG 2 cut(s) 179, 239
BfmI CTRYAG 1 cut(s) 424
BfrI CTTAAG 2 cut(s) 11, 392
BisI GCNGC 2 cut(s) 183, 299
BlsI GCNGC 2 cut(s) 184, 300
Bme1390I CCNGG 1 cut(s) 656
BmeT110I CYCGRG 1 cut(s) 649
BmrFI CCNGG 1 cut(s) 656
BmsI GCATC 2 cut(s) 71, 653
Bpu10I CCTNAGC 2 cut(s) 230, 258
BpuEI CTTGAG 1 cut(s) 344
BsaAI YACGTR 1 cut(s) 502
BsaBI GATNNNNATC 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 506
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 1 cut(s) 656
BseDI CCNNGG 1 cut(s) 506
BseGI GGATG 3 cut(s) 149, 544, 668
BseJI GATNNNNATC 1 cut(s) 405
BseMII CTCAG 2 cut(s) 244, 272
BseRI GAGGAG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 194
BsgI GTGCAG 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 684
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 649
BsoBI CYCGRG 1 cut(s) 649
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 4 cut(s) 196, 208, 406, 608
Bsp19I CCATGG 1 cut(s) 506
BspACI CCGC 4 cut(s) 298, 488, 530, 684
BspCNI CTCAG 2 cut(s) 243, 271
BspFNI CGCG 1 cut(s) 684
BspHI TCATGA 1 cut(s) 493
BspPI GGATC 3 cut(s) 191, 216, 414
BspTI CTTAAG 2 cut(s) 11, 392
BssECI CCNNGG 1 cut(s) 506
BssMI GATC 4 cut(s) 196, 208, 406, 608
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 506
Bst2UI CCWGG 1 cut(s) 656
Bst4CI ACNGT 1 cut(s) 587
BstACI GRCGYC 1 cut(s) 90
BstAFI CTTAAG 2 cut(s) 11, 392
BstBAI YACGTR 1 cut(s) 502
BstC8I GCNNGC 3 cut(s) 160, 236, 604
BstDEI CTNAG 3 cut(s) 186, 230, 258
BstDSI CCRYGG 1 cut(s) 506
BstF5I GGATG 3 cut(s) 149, 544, 668
BstFNI CGCG 1 cut(s) 684
BstKTI GATC 4 cut(s) 199, 211, 409, 611
BstMBI GATC 4 cut(s) 196, 208, 406, 608
BstMWI GCNNNNNNNGC 1 cut(s) 690
BstNI CCWGG 1 cut(s) 656
BstSCI CCNGG 1 cut(s) 654
BstSFI CTRYAG 1 cut(s) 424
BstSNI TACGTA 1 cut(s) 502
BstUI CGCG 1 cut(s) 684
BstV1I GCAGC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 506
BtsCI GGATG 3 cut(s) 149, 544, 668
BtsI GCAGTG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 436
Cac8I GCNNGC 3 cut(s) 160, 236, 604
CciI TCATGA 1 cut(s) 493
CseI GACGC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 499, 503
CspCI CAANNNNNGTGG 2 cut(s) 616, 651
CviAII CATG 3 cut(s) 455, 494, 507
CviJI RGCY 9 cut(s) 5, 16, 162, 185, 234, 238, 602, 654, 693
CviKI_1 RGCY 9 cut(s) 5, 16, 162, 185, 234, 238, 602, 654, 693
CviQI GTAC 2 cut(s) 499, 503
DdeI CTNAG 3 cut(s) 186, 230, 258
DpnI GATC 4 cut(s) 198, 210, 408, 610
DpnII GATC 4 cut(s) 196, 208, 406, 608
EciI GGCGGA 1 cut(s) 477
Eco105I TACGTA 1 cut(s) 502
Eco130I CCWWGG 1 cut(s) 506
Eco88I CYCGRG 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 654
EcoT14I CCWWGG 1 cut(s) 506
ErhI CCWWGG 1 cut(s) 506
FaeI CATG 3 cut(s) 458, 497, 510
FatI CATG 3 cut(s) 454, 493, 506
FauI CCCGC 1 cut(s) 677
FauNDI CATATG 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 183, 299
FokI GGATG 3 cut(s) 136, 551, 675
Fsp4HI GCNGC 2 cut(s) 183, 299
FspBI CTAG 2 cut(s) 179, 239
GluI GCNGC 2 cut(s) 183, 299
HgaI GACGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 3 cut(s) 458, 497, 510
HincII GTYRAC 2 cut(s) 118, 226
HindII GTYRAC 2 cut(s) 118, 226
HinfI GANTC 3 cut(s) 104, 374, 401
HpaI GTTAAC 1 cut(s) 118
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 3 cut(s) 118, 226, 332
Hpy188I TCNGA 2 cut(s) 406, 591
Hpy188III TCNNGA 3 cut(s) 200, 323, 494
Hpy8I GTNNAC 3 cut(s) 118, 226, 332
HpyAV CCTTC 5 cut(s) 38, 81, 197, 335, 653
HpyCH4III ACNGT 1 cut(s) 587
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 3 cut(s) 349, 570, 606
HpyF10VI GCNNNNNNNGC 1 cut(s) 690
HpyF3I CTNAG 3 cut(s) 186, 230, 258
HpySE526I ACGT 1 cut(s) 501
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 3 cut(s) 458, 497, 510
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 4 cut(s) 196, 208, 406, 608
LmnI GCTCC 1 cut(s) 690
LpnPI CCDG 7 cut(s) 166, 220, 245, 305, 618, 641, 668
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 2 cut(s) 71, 653
MaeI CTAG 2 cut(s) 179, 239
MaeII ACGT 1 cut(s) 501
MalI GATC 4 cut(s) 198, 210, 408, 610
MboI GATC 4 cut(s) 196, 208, 406, 608
MboII GAAGA 3 cut(s) 92, 454, 689
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 2 cut(s) 550, 628
MnlI CCTC 5 cut(s) 131, 239, 364, 501, 552
MseI TTAA 4 cut(s) 12, 117, 393, 519
MslI CAYNNNNRTG 2 cut(s) 44, 459
MspA1I CMGCKG 1 cut(s) 234
MspCI CTTAAG 2 cut(s) 11, 392
MspR9I CCNGG 1 cut(s) 656
MvaI CCWGG 1 cut(s) 656
MvnI CGCG 1 cut(s) 684
MwoI GCNNNNNNNGC 1 cut(s) 690
NcoI CCATGG 1 cut(s) 506
NdeI CATATG 1 cut(s) 247
NdeII GATC 4 cut(s) 196, 208, 406, 608
NlaIII CATG 3 cut(s) 458, 497, 510
OliI CACNNNNGTG 1 cut(s) 44
PaeR7I CTCGAG 1 cut(s) 649
PagI TCATGA 1 cut(s) 493
PfeI GAWTC 3 cut(s) 104, 374, 401
PkrI GCNGC 2 cut(s) 184, 300
Ppu21I YACGTR 1 cut(s) 502
Psp6I CCWGG 1 cut(s) 654
PspGI CCWGG 1 cut(s) 654
PspXI VCTCGAGB 1 cut(s) 649
PsuI RGATCY 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 234
RsaI GTAC 2 cut(s) 500, 504
RsaNI GTAC 2 cut(s) 499, 503
RseI CAYNNNNRTG 2 cut(s) 44, 459
SaqAI TTAA 4 cut(s) 12, 117, 393, 519
SatI GCNGC 2 cut(s) 183, 299
Sau3AI GATC 4 cut(s) 196, 208, 406, 608
ScrFI CCNGG 1 cut(s) 656
SduI GDGCHC 1 cut(s) 51
SfaNI GCATC 2 cut(s) 71, 653
SfcI CTRYAG 1 cut(s) 424
Sfr274I CTCGAG 1 cut(s) 649
SlaI CTCGAG 1 cut(s) 649
SmiMI CAYNNNNRTG 2 cut(s) 44, 459
SmlI CTYRAG 4 cut(s) 11, 323, 392, 649
SmoI CTYRAG 4 cut(s) 11, 323, 392, 649
SnaBI TACGTA 1 cut(s) 502
Sse9I AATT 2 cut(s) 550, 628
SsiI CCGC 4 cut(s) 298, 488, 530, 684
SspMI CTAG 2 cut(s) 179, 239
StyD4I CCNGG 1 cut(s) 654
StyI CCWWGG 1 cut(s) 506
TaaI ACNGT 1 cut(s) 587
TaiI ACGT 1 cut(s) 504
TaqI TCGA 3 cut(s) 195, 356, 650
TasI AATT 2 cut(s) 550, 628
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 3 cut(s) 104, 374, 401
Tru1I TTAA 4 cut(s) 12, 117, 393, 519
Tru9I TTAA 4 cut(s) 12, 117, 393, 519
TscAI CASTG 1 cut(s) 436
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 6 cut(s) 150, 154, 189, 301, 305, 471
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 1 cut(s) 436
Vha464I CTTAAG 2 cut(s) 11, 392
XapI RAATTY 1 cut(s) 550
XhoI CTCGAG 1 cut(s) 649
XspI CTAG 2 cut(s) 179, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.