Rh3DG118300
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005189
Physical Location & Seq
Forward (+)
9946598 .. 9950495
3898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG118300.1

Sequence Viewer

Length: 609 bp
ATGGCTTCTCATAAGTTCTTCTCCATCACTGTTCTAACAGCTTTGCTCTCCCTCTGCACCAATGCTCTGTCTCGTACGGAATACAATTGCTCTTCCCAGAAAGTTAACCTAACTATATATTATGACACTCTTAACCCGTACTGTGAGGAATTCATTGTATATGAGCTTCCAAAGGCATTTGAGCTGGAACTCATACACATTATCAACCTCCGTCTAGTACCATCTGGAAATGCTTACATCCAAGAACCTAACAACACCATCAGTTGCCAGGATGGTCCAGCTGAATGCTACTTGAACAGTATAGAAGCTTGTGTAATCAGCATCTGGCCGGATGTGAATAAACATTTCAAATTTATTCACTGTGTTGCATGGCAGAACTTGGGACGATTACAGTTAAAAGAAGATGCATGGAAATCATGTTCCAAAATAACGATGCTGAGTGACAAACCTGTCTCAAATTGCTACAAAAGCGGATATGCGAAAAAGGTTTGGTATAATATTTGTAACAGACGCATACATGGAAAGCTTCCTCCTGCATATAAGAGAACCCAACAGTTCATTGACGGAAATGTAGAAATGATTTGTCAGTCTGTCACATCTCGTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

202

Amino Acids

23.21

Weight (kDa)

8.25

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 36 - 142 9.7e-26 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 449
AciI CCGC 1 cut(s) 471
AcoI YGGCCR 1 cut(s) 326
AcsI RAATTY 2 cut(s) 149, 350
AfaI GTAC 3 cut(s) 76, 140, 219
AgsI TTSAA 2 cut(s) 295, 349
AjnI CCWGG 1 cut(s) 267
AloI GAACNNNNNNTCC 2 cut(s) 403, 435
AluBI AGCT 6 cut(s) 41, 166, 184, 281, 308, 526
AluI AGCT 6 cut(s) 41, 166, 184, 281, 308, 526
Alw26I GTCTC 2 cut(s) 75, 457
AlwNI CAGNNNCTG 1 cut(s) 324
AoxI GGCC 1 cut(s) 326
ApoI RAATTY 2 cut(s) 149, 350
AspS9I GGNCC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 275
BarI GAAGNNNNNNTAC 2 cut(s) 150, 182
BauI CACGAG 1 cut(s) 600
BccI CCATC 4 cut(s) 32, 229, 266, 266
BciT130I CCWGG 1 cut(s) 269
BcoDI GTCTC 2 cut(s) 75, 457
BfaI CTAG 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 3 cut(s) 330, 394, 423
BseBI CCWGG 1 cut(s) 269
BseGI GGATG 3 cut(s) 237, 277, 337
BseMII CTCAG 1 cut(s) 428
BsgI GTGCAG 1 cut(s) 40
BshFI GGCC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 329
BsiWI CGTACG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 396
BsmAI GTCTC 2 cut(s) 75, 457
BsmFI GGGAC 1 cut(s) 396
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 1 cut(s) 328
BspACI CCGC 1 cut(s) 471
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 1 cut(s) 429
BspQI GCTCTTC 1 cut(s) 97
BssSI CACGAG 1 cut(s) 600
Bst2BI CACGAG 1 cut(s) 600
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 6 cut(s) 31, 143, 299, 362, 393, 555
Bst6I CTCTTC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 437
BstF5I GGATG 3 cut(s) 237, 277, 337
BstMAI GTCTC 2 cut(s) 75, 457
BstMWI GCNNNNNNNGC 1 cut(s) 468
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BsuRI GGCC 1 cut(s) 328
BtsCI GGATG 3 cut(s) 237, 277, 337
BtsIMutI CAGTG 2 cut(s) 27, 358
CaiI CAGNNNCTG 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 275
CseI GACGC 1 cut(s) 519
Csp6I GTAC 3 cut(s) 75, 139, 218
CviAII CATG 4 cut(s) 369, 408, 417, 518
CviJI RGCY 8 cut(s) 5, 41, 166, 184, 281, 308, 328, 526
CviKI_1 RGCY 8 cut(s) 5, 41, 166, 184, 281, 308, 328, 526
CviQI GTAC 3 cut(s) 75, 139, 218
DdeI CTNAG 1 cut(s) 437
DrdI GACNNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 449
EaeI YGGCCR 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 275
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 409
FaeI CATG 4 cut(s) 372, 411, 420, 521
FaqI GGGAC 1 cut(s) 396
FatI CATG 4 cut(s) 368, 407, 416, 517
FokI GGATG 3 cut(s) 224, 284, 344
FspBI CTAG 1 cut(s) 215
HaeIII GGCC 1 cut(s) 328
HapII CCGG 1 cut(s) 329
HgaI GACGC 1 cut(s) 519
Hin1II CATG 4 cut(s) 372, 411, 420, 521
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 2 cut(s) 306, 524
HpaI GTTAAC 1 cut(s) 106
HpaII CCGG 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 106
Hpy188III TCNNGA 2 cut(s) 225, 602
Hpy8I GTNNAC 1 cut(s) 106
HpyCH4III ACNGT 6 cut(s) 31, 143, 299, 362, 393, 555
HpyCH4V TGCA 4 cut(s) 57, 368, 407, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 468
HpyF3I CTNAG 1 cut(s) 437
Hsp92II CATG 4 cut(s) 372, 411, 420, 521
KspAI GTTAAC 1 cut(s) 106
LguI GCTCTTC 1 cut(s) 97
LweI GCATC 3 cut(s) 330, 394, 423
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 3 cut(s) 440, 503, 592
MboII GAAGA 3 cut(s) 10, 84, 413
MfeI CAATTG 1 cut(s) 85
MluCI AATT 4 cut(s) 85, 149, 350, 457
MnlI CCTC 4 cut(s) 62, 139, 218, 540
Mph1103I ATGCAT 1 cut(s) 409
MseI TTAA 3 cut(s) 105, 132, 395
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 269
MunI CAATTG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 468
NlaIII CATG 4 cut(s) 372, 411, 420, 521
NmuCI GTSAC 2 cut(s) 440, 592
NsiI ATGCAT 1 cut(s) 409
PciSI GCTCTTC 1 cut(s) 97
PctI GAATGC 1 cut(s) 290
Pfl23II CGTACG 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspLI CGTACG 1 cut(s) 74
PspPI GGNCC 1 cut(s) 275
PstNI CAGNNNCTG 1 cut(s) 324
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 3 cut(s) 76, 140, 219
RsaNI GTAC 3 cut(s) 75, 139, 218
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 3 cut(s) 105, 132, 395
Sau96I GGNCC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 269
SfaNI GCATC 3 cut(s) 330, 394, 423
SinI GGWCC 1 cut(s) 275
Sse9I AATT 4 cut(s) 85, 149, 350, 457
SsiI CCGC 1 cut(s) 471
SspI AATATT 1 cut(s) 499
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 267
TaaI ACNGT 6 cut(s) 31, 143, 299, 362, 393, 555
TasI AATT 4 cut(s) 85, 149, 350, 457
Tru1I TTAA 3 cut(s) 105, 132, 395
Tru9I TTAA 3 cut(s) 105, 132, 395
TscAI CASTG 2 cut(s) 34, 365
TseFI GTSAC 2 cut(s) 440, 592
Tsp45I GTSAC 2 cut(s) 440, 592
TspDTI ATGAA 2 cut(s) 142, 547
TspGWI ACGGA 3 cut(s) 92, 200, 579
TspRI CASTG 2 cut(s) 34, 365
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 2 cut(s) 149, 350
XspI CTAG 1 cut(s) 215
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.