FvH4_6g10910
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005189
Physical Location & Seq
Forward (+)
6536372 .. 6539014
2643 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10910.t1

Sequence Viewer

Length: 624 bp
ATGGCTTCTTGTAAGTTCTTCTCGATCATTGTTCTAGCTGCTTTGATCTCGCTCTTCACCAATGCTCTGTCTCCTGAGGATTTCAATTGCTTTTCTCTGAAAGTTAACCTGACTATATATTACGACACCCTTAGCACGTACTGTGAGGAATTCATTATATATGAACTCCCAAAGGCATTTGAGCTAGATCTCATGCAGATTATCAACCTCCGGCTAGTACCATATGGAAATGCTTACATCCAAGAACCTAACAACACCATCATTTGCCAGAATGGTCCAGCTGAATGCTACTTGAACAGTATAGAAGCTTGTGTGATCAACATCTGGCCGGATGTGAATAAACATTTCAGTTTTGTTCACTGTGTTGCGTGGCAAAACTTGAGACGATTACAGTTAGAAGAAGATGAATGGAAATCATGTTCTAAAATAATGATGATGAGTGACAAACTTGTCTCAGATTGCTATGAAAGCGGATGTGCAAAAAAGCTTCTACTACAATACGCTAATGAAACAAAGCACCTAGATCCTCCTCATACAAATGTGCCATGGGTTGTCATCAATAAGCAACCACTATACTATGTAAATCGCTCTCCATCTCACTTCTTTTTTTCTCTTACACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

208

Amino Acids

24.02

Weight (kDa)

5.47

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 36 - 142 5.2e-26 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 449
AciI CCGC 1 cut(s) 471
AclWI GGATC 1 cut(s) 518
AcoI YGGCCR 1 cut(s) 326
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 2 cut(s) 140, 219
AgsI TTSAA 2 cut(s) 85, 295
AloI GAACNNNNNNTCC 2 cut(s) 403, 435
AluBI AGCT 5 cut(s) 38, 184, 281, 308, 487
AluI AGCT 5 cut(s) 38, 184, 281, 308, 487
Alw26I GTCTC 3 cut(s) 75, 376, 457
AlwI GGATC 1 cut(s) 518
AoxI GGCC 1 cut(s) 326
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 1 cut(s) 275
AxyI CCTNAGG 1 cut(s) 75
BbvI GCAGC 1 cut(s) 25
BccI CCATC 2 cut(s) 266, 601
BclI TGATCA 1 cut(s) 315
BcoDI GTCTC 3 cut(s) 75, 376, 457
BfaI CTAG 4 cut(s) 35, 185, 215, 521
BglII AGATCT 1 cut(s) 187
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 400
BsaAI YACGTR 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 545
Bse21I CCTNAGG 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 545
BseGI GGATG 3 cut(s) 237, 337, 479
BseJI GATNNNNATC 1 cut(s) 320
BseMII CTCAG 2 cut(s) 66, 468
BseRI GAGGAG 1 cut(s) 519
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 328
BsiSI CCGG 2 cut(s) 211, 329
BsmAI GTCTC 3 cut(s) 75, 376, 457
BsmBI CGTCTC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 1 cut(s) 328
Bsp143I GATC 5 cut(s) 24, 45, 187, 315, 523
Bsp19I CCATGG 1 cut(s) 545
BspACI CCGC 1 cut(s) 471
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 2 cut(s) 67, 467
BspPI GGATC 1 cut(s) 518
BspQI GCTCTTC 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 545
BssMI GATC 5 cut(s) 24, 45, 187, 315, 523
BssT1I CCWWGG 1 cut(s) 545
Bst4CI ACNGT 4 cut(s) 143, 299, 362, 393
Bst6I CTCTTC 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 138
BstDEI CTNAG 3 cut(s) 75, 131, 454
BstDSI CCRYGG 1 cut(s) 545
BstF5I GGATG 3 cut(s) 237, 337, 479
BstKTI GATC 5 cut(s) 27, 48, 190, 318, 526
BstMAI GTCTC 3 cut(s) 75, 376, 457
BstMBI GATC 5 cut(s) 24, 45, 187, 315, 523
BstMWI GCNNNNNNNGC 1 cut(s) 468
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 2 cut(s) 187, 523
BstYI RGATCY 2 cut(s) 187, 523
Bsu36I CCTNAGG 1 cut(s) 75
BsuRI GGCC 1 cut(s) 328
BtgI CCRYGG 1 cut(s) 545
BtsCI GGATG 3 cut(s) 237, 337, 479
BtsIMutI CAGTG 2 cut(s) 358, 619
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 139, 218
CviAII CATG 3 cut(s) 193, 417, 546
CviJI RGCY 8 cut(s) 5, 38, 184, 214, 281, 308, 328, 487
CviKI_1 RGCY 8 cut(s) 5, 38, 184, 214, 281, 308, 328, 487
CviQI GTAC 2 cut(s) 139, 218
DdeI CTNAG 3 cut(s) 75, 131, 454
DpnI GATC 5 cut(s) 26, 47, 189, 317, 525
DpnII GATC 5 cut(s) 24, 45, 187, 315, 523
DrdI GACNNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 449
EaeI YGGCCR 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 545
Eco47I GGWCC 1 cut(s) 275
Eco81I CCTNAGG 1 cut(s) 75
EcoRI GAATTC 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 545
ErhI CCWWGG 1 cut(s) 545
Esp3I CGTCTC 1 cut(s) 376
FaeI CATG 3 cut(s) 196, 420, 549
FatI CATG 3 cut(s) 192, 416, 545
FauNDI CATATG 1 cut(s) 223
FbaI TGATCA 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 3 cut(s) 224, 344, 486
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 4 cut(s) 35, 185, 215, 521
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 328
HapII CCGG 2 cut(s) 211, 329
Hin1II CATG 3 cut(s) 196, 420, 549
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 2 cut(s) 306, 485
HpaI GTTAAC 1 cut(s) 106
HpaII CCGG 2 cut(s) 211, 329
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 106, 358
Hpy188I TCNGA 2 cut(s) 99, 457
Hpy188III TCNNGA 2 cut(s) 22, 74
Hpy8I GTNNAC 2 cut(s) 106, 358
HpyCH4III ACNGT 4 cut(s) 143, 299, 362, 393
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 196, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 468
HpyF3I CTNAG 3 cut(s) 75, 131, 454
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 3 cut(s) 196, 420, 549
Ksp22I TGATCA 1 cut(s) 315
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 5 cut(s) 24, 45, 187, 315, 523
LguI GCTCTTC 1 cut(s) 59
LpnPI CCDG 7 cut(s) 87, 122, 224, 281, 291, 310, 342
Lsp1109I GCAGC 1 cut(s) 25
MaeI CTAG 4 cut(s) 35, 185, 215, 521
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 440
MalI GATC 5 cut(s) 26, 47, 189, 317, 525
MboI GATC 5 cut(s) 24, 45, 187, 315, 523
MboII GAAGA 4 cut(s) 10, 46, 410, 413
MfeI CAATTG 1 cut(s) 85
MflI RGATCY 2 cut(s) 187, 523
MluCI AATT 2 cut(s) 85, 149
MnlI CCTC 5 cut(s) 70, 139, 218, 537, 540
MseI TTAA 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 537
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 2 cut(s) 211, 329
MunI CAATTG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 468
NcoI CCATGG 1 cut(s) 545
NdeI CATATG 1 cut(s) 223
NdeII GATC 5 cut(s) 24, 45, 187, 315, 523
NlaIII CATG 3 cut(s) 196, 420, 549
NmuCI GTSAC 1 cut(s) 440
PciSI GCTCTTC 1 cut(s) 59
PctI GAATGC 1 cut(s) 290
PkrI GCNGC 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 138
PspPI GGNCC 1 cut(s) 275
PsuI RGATCY 2 cut(s) 187, 523
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 2 cut(s) 140, 219
RsaNI GTAC 2 cut(s) 139, 218
RseI CAYNNNNRTG 1 cut(s) 537
SapI GCTCTTC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 5 cut(s) 24, 45, 187, 315, 523
Sau96I GGNCC 1 cut(s) 275
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 2 cut(s) 85, 149
SsiI CCGC 1 cut(s) 471
SspMI CTAG 4 cut(s) 35, 185, 215, 521
StyI CCWWGG 1 cut(s) 545
TaaI ACNGT 4 cut(s) 143, 299, 362, 393
TaiI ACGT 1 cut(s) 140
TaqI TCGA 1 cut(s) 23
TasI AATT 2 cut(s) 85, 149
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 365
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 5 cut(s) 142, 177, 420, 480, 522
TspRI CASTG 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 1 cut(s) 149
XspI CTAG 4 cut(s) 35, 185, 215, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.