Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005189

Physical Location & Seq

Genomic Coordinates Forward (+)

9907049 .. 9908390

Gene Structure 1342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42849

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCTTCTCTTAAGCTCTTGTTTTCCCTTGTTGTTCTCACTTCCGTGCTCTCCATTCAAGCATCTTATCCTTCTTTTGAAGATAACGGCGTCAATGTCCTTGAATCCAAGAAAGTTAACCTCTCTCTGTATTATGAAACTCTATGCCCATCCTGTGCGAGCTTCATTGTAAATGAACTAGCAGCTACGTTATTCGATCCCGAAGGGGATCTCGTAAGCATTGTCAACCTTAGGCTAGTTCCATATGGAAATGCTCAGGTCAAAGCACCTAACAAGACCATCGTTTGCCAGAAGCGGCATTTCAAGTTCATTCATTGTCTTGAGAGTAAACTTATTGAAGGACTGCACTCCTCGAAAGAATATGCTTGGGAATCTTGTTGTGTAAAACTTGAGATGGATTCGGATCGTTTGGGAAAGTGCTACCGCAGTGGATATGAGAAGAAGCTTATACTTGAAAATGCTAAAGAAACAGACCACCTTGTTCCGCCTCATGAGTACGTACCATGGGTGGTTGTTAATGGACAACCGCTAAAGGATGATTACCTAAATTTTGTGAGGTATGTCTGCAACGCTTACAAAGACAGTCCGAAACCAAAGGCTTGCAGATCATATCAACACAACATCAATTCAGGTGGAAAGGCAAACTCGAGCCTAGAAGGATGCTATAAAGGTGATCAGAACGCGGGGGGAGCTGAAACACTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0002376 GO:0002474 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005775 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008285 GO:0009987 GO:0010033 GO:0015036 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019221 GO:0019882 GO:0019884 GO:0019886 GO:0023052 GO:0030054 GO:0031647 GO:0031974 GO:0034097 GO:0034341 GO:0042127 GO:0042221 GO:0042590 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0047134 GO:0048002 GO:0048145 GO:0048147 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051716 GO:0055114 GO:0060333 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071346

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT SapA

Protein Analysis

235

Amino Acids

26.25

Weight (kDa)

6.98

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	40 - 98	1e-10	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005189)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10880 FvH4_6g10910
malus_domestica	MD04G1163800.v1.1
prunus_persica	Prupe.6G283100_v2.0.a1
pyrus_communis	pycom04g14630
rosa_chinensis	RchiOBHm_Chr3g0462101 RchiOBHm_Chr3g0462161 RchiOBHm_Chr5g0067031 RchiOBHm_Chr5g0067041
rosa_laevigata	RLG00000024880
rosa_multiflora	Rmu_sc0006583.1_g000007
rosa_roxburghii	Rroxscaffold_1G00014070 Rroxscaffold_4G00297620 Rroxscaffold_6G00417710 Rroxscaffold_6G00417730
rosa_rugosa	Rorug03G0054600 Rorug03G0054600 Rorug03G0054600 Rorug03G0054700
rosa_samantha	Rh3AG113200 Rh3AG113400 Rh3CG118900 Rh3CG119200 Rh3DG118000 Rh3DG118300 Rh5AG440800 Rh5DG473100
rosa_wichuraiana	Rw3G009550 Rw3G009570 Rw5G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	683
AciI	CCGC	5 cut(s)	295, 424, 485, 527, 683
AclWI	GGATC	3 cut(s)	191, 216, 411
AcsI	RAATTY	1 cut(s)	547
AcuI	CTGAAG	1 cut(s)	686
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	2 cut(s)	497, 501
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	6 cut(s)	59, 80, 104, 304, 338, 455
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	5 cut(s)	16, 162, 185, 445, 692
AluI	AGCT	5 cut(s)	16, 162, 185, 445, 692
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	3 cut(s)	191, 216, 411
Ama87I	CYCGRG	1 cut(s)	646
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	547
Asp700I	GAANNNNTTC	1 cut(s)	699
AsuHPI	GGTGA	1 cut(s)	683
AvaI	CYCGRG	1 cut(s)	646
AxyI	CCTNAGG	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	3 cut(s)	157, 287, 388
BceAI	ACGGC	1 cut(s)	103
BclI	TGATCA	1 cut(s)	673
BfaI	CTAG	3 cut(s)	179, 236, 653
BfrI	CTTAAG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	183, 296
BlsI	GCNGC	2 cut(s)	184, 297
BmeT110I	CYCGRG	1 cut(s)	646
BmsI	GCATC	2 cut(s)	71, 650
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	341, 410
BsaAI	YACGTR	1 cut(s)	499
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	503
Bse21I	CCTNAGG	1 cut(s)	230
Bse8I	GATNNNNATC	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	503
BseGI	GGATG	3 cut(s)	149, 541, 665
BseJI	GATNNNNATC	1 cut(s)	402
BseMII	CTCAG	1 cut(s)	269
BseRI	GAGGAG	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	683
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	646
BsoBI	CYCGRG	1 cut(s)	646
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	5 cut(s)	196, 208, 403, 605, 673
Bsp19I	CCATGG	1 cut(s)	503
BspACI	CCGC	5 cut(s)	295, 424, 485, 527, 683
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	683
BspHI	TCATGA	1 cut(s)	490
BspPI	GGATC	3 cut(s)	191, 216, 411
BspTI	CTTAAG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	503
BssMI	GATC	5 cut(s)	196, 208, 403, 605, 673
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	503
Bst4CI	ACNGT	1 cut(s)	584
BstACI	GRCGYC	1 cut(s)	90
BstAFI	CTTAAG	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	499
BstC8I	GCNNGC	2 cut(s)	160, 601
BstDEI	CTNAG	2 cut(s)	230, 255
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	3 cut(s)	149, 541, 665
BstFNI	CGCG	1 cut(s)	683
BstKTI	GATC	5 cut(s)	199, 211, 406, 608, 676
BstMBI	GATC	5 cut(s)	196, 208, 403, 605, 673
BstMWI	GCNNNNNNNGC	1 cut(s)	689
BstSNI	TACGTA	1 cut(s)	499
BstUI	CGCG	1 cut(s)	683
BstV1I	GCAGC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	3 cut(s)	149, 541, 665
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	1 cut(s)	433
Cac8I	GCNNGC	2 cut(s)	160, 601
CciI	TCATGA	1 cut(s)	490
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	496, 500
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviAII	CATG	2 cut(s)	491, 504
CviJI	RGCY	9 cut(s)	5, 16, 162, 185, 235, 445, 599, 651, 692
CviKI_1	RGCY	9 cut(s)	5, 16, 162, 185, 235, 445, 599, 651, 692
CviQI	GTAC	2 cut(s)	496, 500
DdeI	CTNAG	2 cut(s)	230, 255
DpnI	GATC	5 cut(s)	198, 210, 405, 607, 675
DpnII	GATC	5 cut(s)	196, 208, 403, 605, 673
EciI	GGCGGA	1 cut(s)	474
Eco105I	TACGTA	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	686
Eco81I	CCTNAGG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	646
EcoT14I	CCWWGG	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	503
FaeI	CATG	2 cut(s)	494, 507
FatI	CATG	2 cut(s)	490, 503
FauI	CCCGC	1 cut(s)	676
FauNDI	CATATG	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	2 cut(s)	183, 296
FokI	GGATG	3 cut(s)	136, 548, 672
Fsp4HI	GCNGC	2 cut(s)	183, 296
FspBI	CTAG	3 cut(s)	179, 236, 653
GluI	GCNGC	2 cut(s)	183, 296
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	494, 507
HincII	GTYRAC	2 cut(s)	118, 226
HindII	GTYRAC	2 cut(s)	118, 226
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	3 cut(s)	104, 371, 398
HpaI	GTTAAC	1 cut(s)	118
HphI	GGTGA	1 cut(s)	683
Hpy166II	GTNNAC	3 cut(s)	118, 226, 329
Hpy188I	TCNGA	3 cut(s)	403, 588, 678
Hpy188III	TCNNGA	3 cut(s)	200, 320, 491
Hpy8I	GTNNAC	3 cut(s)	118, 226, 329
HpyAV	CCTTC	4 cut(s)	81, 197, 332, 650
HpyCH4III	ACNGT	1 cut(s)	584
HpyCH4IV	ACGT	2 cut(s)	188, 498
HpyCH4V	TGCA	3 cut(s)	346, 567, 603
HpyF10VI	GCNNNNNNNGC	1 cut(s)	689
HpyF3I	CTNAG	2 cut(s)	230, 255
HpySE526I	ACGT	2 cut(s)	188, 498
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	494, 507
Ksp22I	TGATCA	1 cut(s)	673
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	5 cut(s)	196, 208, 403, 605, 673
LmnI	GCTCC	1 cut(s)	689
LpnPI	CCDG	4 cut(s)	166, 242, 302, 615
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	2 cut(s)	71, 650
MaeI	CTAG	3 cut(s)	179, 236, 653
MaeII	ACGT	2 cut(s)	188, 498
MalI	GATC	5 cut(s)	198, 210, 405, 607, 675
MboI	GATC	5 cut(s)	196, 208, 403, 605, 673
MboII	GAAGA	2 cut(s)	92, 451
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	2 cut(s)	547, 625
MnlI	CCTC	4 cut(s)	131, 361, 498, 549
MroXI	GAANNNNTTC	1 cut(s)	699
MseI	TTAA	3 cut(s)	12, 117, 516
MslI	CAYNNNNRTG	1 cut(s)	44
MspCI	CTTAAG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	683
MwoI	GCNNNNNNNGC	1 cut(s)	689
NcoI	CCATGG	1 cut(s)	503
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	5 cut(s)	196, 208, 403, 605, 673
NlaIII	CATG	2 cut(s)	494, 507
OliI	CACNNNNGTG	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	646
PagI	TCATGA	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	3 cut(s)	104, 371, 398
PkrI	GCNGC	2 cut(s)	184, 297
Ppu21I	YACGTR	1 cut(s)	499
PspXI	VCTCGAGB	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	2 cut(s)	497, 501
RsaNI	GTAC	2 cut(s)	496, 500
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	12, 117, 516
SatI	GCNGC	2 cut(s)	183, 296
Sau3AI	GATC	5 cut(s)	196, 208, 403, 605, 673
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	2 cut(s)	71, 650
Sfr274I	CTCGAG	1 cut(s)	646
SlaI	CTCGAG	1 cut(s)	646
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	4 cut(s)	11, 320, 389, 646
SmoI	CTYRAG	4 cut(s)	11, 320, 389, 646
SnaBI	TACGTA	1 cut(s)	499
Sse9I	AATT	2 cut(s)	547, 625
SsiI	CCGC	5 cut(s)	295, 424, 485, 527, 683
SspMI	CTAG	3 cut(s)	179, 236, 653
StyI	CCWWGG	1 cut(s)	503
TaaI	ACNGT	1 cut(s)	584
TaiI	ACGT	2 cut(s)	191, 501
TaqI	TCGA	3 cut(s)	195, 353, 647
TasI	AATT	2 cut(s)	547, 625
TauI	GCSGC	1 cut(s)	298
TfiI	GAWTC	3 cut(s)	104, 371, 398
Tru1I	TTAA	3 cut(s)	12, 117, 516
Tru9I	TTAA	3 cut(s)	12, 117, 516
TscAI	CASTG	1 cut(s)	433
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	5 cut(s)	150, 154, 189, 298, 302
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	433
Vha464I	CTTAAG	1 cut(s)	11
XapI	RAATTY	1 cut(s)	547
XhoI	CTCGAG	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	3 cut(s)	179, 236, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.