Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005189

Physical Location & Seq

Genomic Coordinates Forward (+)

17417619 .. 17420279

Gene Structure 2661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00014070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCTCACCACGAATCCCGGCAACTCAATCCGAGACAGAACCGCCACGGAATCGCCGTCATGATCCGGTTTCAGCTCGGTTCCGTCAATTCGCATTCTGTAATGGCTTCTCTTAAGCTCTTGTTTTCCCTTGTTCTCACTTCCGTGCTCTCCATTCAAGCATCTTATCCTTCTTTTGAAGATAACGGCATCAATGTCCTTGAATCCAAGAAAGTTAACCTCTCTCTGTATTATGAAACTCTATGCCCATCCTGTGCGAGCTTCATTGTAAATGAACTAGCAGCCAAGTTATTCGATCCCGAAGGGGATCTCATAAGCATTGTCAACCTCAGGCTAGTTCCATATGGAAATGCTCAGCGGCATTTCAAGTTCATTCATTGTCTTGAGAGTAAACTTATTGAAGGAATGCACTCCTCGAAAGAATATGCTTGGGAATCTTGTTGTGTAAAACTTAAGATGGATTCGGATCGTTTGGGAAAGTGCTACCGCAGTGGATATGAGAAGAAGCTTATACTTCAAAATGCTAAAGAAACAGACCACCTTGTTCCGCCTCATGAGTACGTACCATGGGTGGTTGTTAATGGACAACCGCTAAAGGATGATTACCTAAATTTTGTGAGGTATGTCTGCAACGCTTACAAAGACAGTCCGAAACCAAAGGCTTGCAGATCATATCCACACAACATCAATTCAGGTGGAAAGGCAAACTCGAGCCTAGAAGGATGCTATAAAGGTGAAGAACGCGGGGGAGCTGAAACACTTCAGTCTGATTCAATATGGTGGTTCTGCATCATCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0002376 GO:0002474 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005775 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008285 GO:0009987 GO:0010033 GO:0015036 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019221 GO:0019882 GO:0019884 GO:0019886 GO:0023052 GO:0030054 GO:0031647 GO:0031974 GO:0034097 GO:0034341 GO:0042127 GO:0042221 GO:0042590 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0047134 GO:0048002 GO:0048145 GO:0048147 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051716 GO:0055114 GO:0060333 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071346

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT SapA

Protein Analysis

266

Amino Acids

30.15

Weight (kDa)

8.26

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	73 - 119	3.9e-08	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005189)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10880 FvH4_6g10910
malus_domestica	MD04G1163800.v1.1
prunus_persica	Prupe.6G283100_v2.0.a1
pyrus_communis	pycom04g14630
rosa_chinensis	RchiOBHm_Chr3g0462101 RchiOBHm_Chr3g0462161 RchiOBHm_Chr5g0067031 RchiOBHm_Chr5g0067041
rosa_laevigata	RLG00000024880
rosa_multiflora	Rmu_sc0006583.1_g000007
rosa_roxburghii	Rroxscaffold_1G00014070 Rroxscaffold_4G00297620 Rroxscaffold_6G00417710 Rroxscaffold_6G00417730
rosa_rugosa	Rorug03G0054600 Rorug03G0054600 Rorug03G0054600 Rorug03G0054700
rosa_samantha	Rh3AG113200 Rh3AG113400 Rh3CG118900 Rh3CG119200 Rh3DG118000 Rh3DG118300 Rh5AG440800 Rh5DG473100
rosa_wichuraiana	Rw3G009550 Rw3G009570 Rw5G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	744
AciI	CCGC	6 cut(s)	43, 358, 487, 548, 590, 744
AclWI	GGATC	4 cut(s)	58, 290, 315, 474
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	1 cut(s)	746
AfaI	GTAC	2 cut(s)	560, 564
AflII	CTTAAG	2 cut(s)	113, 452
AgsI	TTSAA	7 cut(s)	158, 179, 203, 367, 401, 518, 774
AleI	CACNNNNGTG	1 cut(s)	143
AluBI	AGCT	5 cut(s)	76, 118, 261, 508, 752
AluI	AGCT	5 cut(s)	76, 118, 261, 508, 752
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	4 cut(s)	58, 290, 315, 474
Ama87I	CYCGRG	1 cut(s)	709
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	610
Asp700I	GAANNNNTTC	1 cut(s)	759
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	746
AvaI	CYCGRG	1 cut(s)	709
AxyI	CCTNAGG	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	2 cut(s)	256, 451
BceAI	ACGGC	2 cut(s)	41, 202
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	3 cut(s)	278, 335, 716
BfrI	CTTAAG	2 cut(s)	113, 452
BisI	GCNGC	2 cut(s)	282, 359
BlpI	GCTNAGC	1 cut(s)	354
BlsI	GCNGC	2 cut(s)	283, 360
Bme1390I	CCNGG	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	709
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	3 cut(s)	170, 198, 713
Bpu1102I	GCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	19
BsaAI	YACGTR	1 cut(s)	562
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	2 cut(s)	46, 566
BsaWI	WCCGGW	1 cut(s)	66
Bse21I	CCTNAGG	1 cut(s)	329
Bse8I	GATNNNNATC	1 cut(s)	465
BseDI	CCNNGG	2 cut(s)	46, 566
BseGI	GGATG	4 cut(s)	248, 604, 728, 792
BseJI	GATNNNNATC	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	343, 368
BseRI	GAGGAG	1 cut(s)	403
BseXI	GCAGC	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	744
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	709
BsiSI	CCGG	2 cut(s)	19, 67
BsmAI	GTCTC	1 cut(s)	28
BsmI	GAATGC	2 cut(s)	94, 411
BsoBI	CYCGRG	1 cut(s)	709
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	5 cut(s)	63, 295, 307, 466, 668
Bsp1720I	GCTNAGC	1 cut(s)	354
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	6 cut(s)	43, 358, 487, 548, 590, 744
BspCNI	CTCAG	2 cut(s)	342, 367
BspFNI	CGCG	1 cut(s)	744
BspHI	TCATGA	2 cut(s)	60, 553
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	4 cut(s)	58, 290, 315, 474
BspTI	CTTAAG	2 cut(s)	113, 452
BssECI	CCNNGG	2 cut(s)	46, 566
BssMI	GATC	5 cut(s)	63, 295, 307, 466, 668
BssT1I	CCWWGG	1 cut(s)	566
Bst4CI	ACNGT	1 cut(s)	647
BstAFI	CTTAAG	2 cut(s)	113, 452
BstBAI	YACGTR	1 cut(s)	562
BstC8I	GCNNGC	2 cut(s)	259, 664
BstDEI	CTNAG	2 cut(s)	329, 354
BstDSI	CCRYGG	2 cut(s)	46, 566
BstF5I	GGATG	4 cut(s)	248, 604, 728, 792
BstFNI	CGCG	1 cut(s)	744
BstKTI	GATC	5 cut(s)	66, 298, 310, 469, 671
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	5 cut(s)	63, 295, 307, 466, 668
BstSCI	CCNGG	1 cut(s)	17
BstSNI	TACGTA	1 cut(s)	562
BstUI	CGCG	1 cut(s)	744
BstV1I	GCAGC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
Bsu36I	CCTNAGG	1 cut(s)	329
BtgI	CCRYGG	2 cut(s)	46, 566
BtsCI	GGATG	4 cut(s)	248, 604, 728, 792
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	496
Cac8I	GCNNGC	2 cut(s)	259, 664
CciI	TCATGA	2 cut(s)	60, 553
Csp6I	GTAC	2 cut(s)	559, 563
CspCI	CAANNNNNGTGG	2 cut(s)	676, 711
CviAII	CATG	3 cut(s)	61, 554, 567
CviQI	GTAC	2 cut(s)	559, 563
DdeI	CTNAG	2 cut(s)	329, 354
DpnI	GATC	5 cut(s)	65, 297, 309, 468, 670
DpnII	GATC	5 cut(s)	63, 295, 307, 466, 668
EciI	GGCGGA	1 cut(s)	537
Eco105I	TACGTA	1 cut(s)	562
Eco130I	CCWWGG	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	746
Eco81I	CCTNAGG	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	709
EcoT14I	CCWWGG	1 cut(s)	566
ErhI	CCWWGG	1 cut(s)	566
FaeI	CATG	3 cut(s)	64, 557, 570
FatI	CATG	3 cut(s)	60, 553, 566
FauI	CCCGC	1 cut(s)	737
FauNDI	CATATG	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	282, 359
FokI	GGATG	4 cut(s)	235, 611, 735, 779
Fsp4HI	GCNGC	2 cut(s)	282, 359
FspBI	CTAG	3 cut(s)	278, 335, 716
GluI	GCNGC	2 cut(s)	282, 359
HapII	CCGG	2 cut(s)	19, 67
Hin1II	CATG	3 cut(s)	64, 557, 570
HincII	GTYRAC	2 cut(s)	217, 325
HindII	GTYRAC	2 cut(s)	217, 325
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	6 cut(s)	14, 51, 203, 434, 461, 770
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	2 cut(s)	19, 67
HphI	GGTGA	1 cut(s)	746
Hpy166II	GTNNAC	3 cut(s)	217, 325, 392
Hpy188I	TCNGA	4 cut(s)	33, 466, 651, 769
Hpy188III	TCNNGA	4 cut(s)	61, 299, 383, 554
Hpy8I	GTNNAC	3 cut(s)	217, 325, 392
HpyAV	CCTTC	4 cut(s)	180, 296, 395, 713
HpyCH4III	ACNGT	1 cut(s)	647
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	4 cut(s)	409, 630, 666, 789
HpyF3I	CTNAG	2 cut(s)	329, 354
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	3 cut(s)	64, 557, 570
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	5 cut(s)	63, 295, 307, 466, 668
LmnI	GCTCC	1 cut(s)	749
LpnPI	CCDG	5 cut(s)	32, 80, 265, 316, 678
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	3 cut(s)	170, 198, 713
MaeI	CTAG	3 cut(s)	278, 335, 716
MaeII	ACGT	1 cut(s)	561
MalI	GATC	5 cut(s)	65, 297, 309, 468, 670
MboI	GATC	5 cut(s)	63, 295, 307, 466, 668
MboII	GAAGA	3 cut(s)	191, 514, 749
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	3 cut(s)	88, 610, 688
MnlI	CCTC	5 cut(s)	230, 338, 424, 561, 612
MroXI	GAANNNNTTC	1 cut(s)	759
MseI	TTAA	5 cut(s)	114, 216, 453, 579, 799
MslI	CAYNNNNRTG	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	358
MspCI	CTTAAG	2 cut(s)	113, 452
MspI	CCGG	2 cut(s)	19, 67
MspR9I	CCNGG	1 cut(s)	19
Mva1269I	GAATGC	2 cut(s)	94, 411
MvnI	CGCG	1 cut(s)	744
NciI	CCSGG	1 cut(s)	19
NcoI	CCATGG	1 cut(s)	566
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	5 cut(s)	63, 295, 307, 466, 668
NlaIII	CATG	3 cut(s)	64, 557, 570
NlaIV	GGNNCC	1 cut(s)	82
OliI	CACNNNNGTG	1 cut(s)	143
PaeR7I	CTCGAG	1 cut(s)	709
PagI	TCATGA	2 cut(s)	60, 553
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	2 cut(s)	94, 411
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	6 cut(s)	14, 51, 203, 434, 461, 770
PkrI	GCNGC	2 cut(s)	283, 360
Ppu21I	YACGTR	1 cut(s)	562
PspN4I	GGNNCC	1 cut(s)	82
PspXI	VCTCGAGB	1 cut(s)	709
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	2 cut(s)	560, 564
RsaNI	GTAC	2 cut(s)	559, 563
RseI	CAYNNNNRTG	1 cut(s)	143
SaqAI	TTAA	5 cut(s)	114, 216, 453, 579, 799
SatI	GCNGC	2 cut(s)	282, 359
Sau3AI	GATC	5 cut(s)	63, 295, 307, 466, 668
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	150
SfaNI	GCATC	3 cut(s)	170, 198, 713
Sfr274I	CTCGAG	1 cut(s)	709
SlaI	CTCGAG	1 cut(s)	709
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	4 cut(s)	113, 383, 452, 709
SmoI	CTYRAG	4 cut(s)	113, 383, 452, 709
SnaBI	TACGTA	1 cut(s)	562
Sse9I	AATT	3 cut(s)	88, 610, 688
SsiI	CCGC	6 cut(s)	43, 358, 487, 548, 590, 744
SspMI	CTAG	3 cut(s)	278, 335, 716
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	1 cut(s)	647
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	3 cut(s)	294, 416, 710
TasI	AATT	3 cut(s)	88, 610, 688
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	6 cut(s)	14, 51, 203, 434, 461, 770
Tru1I	TTAA	5 cut(s)	114, 216, 453, 579, 799
Tru9I	TTAA	5 cut(s)	114, 216, 453, 579, 799
TscAI	CASTG	1 cut(s)	496
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	5 cut(s)	249, 253, 288, 361, 365
TspGWI	ACGGA	3 cut(s)	63, 73, 133
TspRI	CASTG	1 cut(s)	496
Vha464I	CTTAAG	2 cut(s)	113, 452
XapI	RAATTY	1 cut(s)	610
XhoI	CTCGAG	1 cut(s)	709
XmnI	GAANNNNTTC	1 cut(s)	759
XspI	CTAG	3 cut(s)	278, 335, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.