Rroxscaffold_4G00297620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005189
Physical Location & Seq
Reverse (-)
17498624 .. 17499055
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00297620.1

Sequence Viewer

Length: 432 bp
ATGGCTCACCACGAATCCCGGCAACTCAATCCGAGACGAACCGCCACGGGAATCGCCGTCATGATGCGGTTCCGGCTCGGTTCCGTCAATTCGGTATGCTTTTCATCCATACCGGTGCCGACCCGTTTGCGAAGTTTCGGTATGGTTCGGATCGGGATTCCGCGAAACGACTCATCATACCGACCCGATCGGTTTCGCGCTCGGATCGGACGGGATCGGTTTCGGGATCTCGGTTTGGAATTCCCACCTAGAATTCATATGTTTGAGATGGAGAAGAATAGAAGAAATATCGCCATCAATTTGGTCTCACGAAAAGCTTCATACATTAGACCTTTTAGGTCGTCGCGAGCTCAAAAGATGGCCTTCCTCGTCGTCGGTTGTGGGACGATTGTGCTCTTTGAAAACTTTGAATCTCGAATCGCAATGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.67

Weight (kDa)

11.71

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 115
AccII CGCG 3 cut(s) 163, 198, 346
AciI CCGC 3 cut(s) 42, 67, 161
AclWI GGATC 4 cut(s) 158, 212, 222, 234
AcsI RAATTY 2 cut(s) 239, 252
AgeI ACCGGT 1 cut(s) 112
AgsI TTSAA 2 cut(s) 401, 410
AluBI AGCT 2 cut(s) 317, 350
AluI AGCT 2 cut(s) 317, 350
Alw21I GWGCWC 2 cut(s) 352, 396
Alw26I GTCTC 2 cut(s) 28, 310
AlwI GGATC 4 cut(s) 158, 212, 222, 234
AoxI GGCC 1 cut(s) 360
ApoI RAATTY 2 cut(s) 239, 252
AsiGI ACCGGT 1 cut(s) 112
Asp700I GAANNNNTTC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 200
AsuC2I CCSGG 1 cut(s) 19
BanI GGYRCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 352
Bbv12I GWGCWC 2 cut(s) 352, 396
BccI CCATC 3 cut(s) 262, 302, 352
BceAI ACGGC 1 cut(s) 41
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 2 cut(s) 28, 310
BfaI CTAG 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 19
BmiI GGNNCC 3 cut(s) 71, 82, 117
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 112
Bse118I RCCGGY 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 104
BseMI GCAATG 1 cut(s) 429
Bsh1236I CGCG 3 cut(s) 163, 198, 346
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 1 cut(s) 362
BshNI GGYRCC 1 cut(s) 115
BshTI ACCGGT 1 cut(s) 112
BsiEI CGRYCG 1 cut(s) 190
BsiHKAI GWGCWC 2 cut(s) 352, 396
BsiSI CCGG 3 cut(s) 19, 73, 113
BslFI GGGAC 1 cut(s) 397
BsmAI GTCTC 2 cut(s) 28, 310
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 397
BsnI GGCC 1 cut(s) 362
Bso31I GGTCTC 1 cut(s) 310
Bsp1286I GDGCHC 2 cut(s) 352, 396
Bsp143I GATC 5 cut(s) 150, 187, 204, 214, 226
Bsp68I TCGCGA 1 cut(s) 346
BspACI CCGC 3 cut(s) 42, 67, 161
BspANI GGCC 1 cut(s) 362
BspFNI CGCG 3 cut(s) 163, 198, 346
BspHI TCATGA 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 71, 82, 117
BspPI GGATC 4 cut(s) 158, 212, 222, 234
BspT107I GGYRCC 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 5 cut(s) 150, 187, 204, 214, 226
BstC8I GCNNGC 1 cut(s) 348
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 104
BstFNI CGCG 3 cut(s) 163, 198, 346
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 5 cut(s) 153, 190, 207, 217, 229
BstMAI GTCTC 2 cut(s) 28, 310
BstMBI GATC 5 cut(s) 150, 187, 204, 214, 226
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 17
BstUI CGCG 3 cut(s) 163, 198, 346
BstX2I RGATCY 1 cut(s) 226
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 1 cut(s) 362
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 104
BtuMI TCGCGA 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 348
CciI TCATGA 1 cut(s) 60
CfoI GCGC 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 112
CspAI ACCGGT 1 cut(s) 112
CviAII CATG 1 cut(s) 61
CviJI RGCY 5 cut(s) 5, 76, 317, 350, 362
CviKI_1 RGCY 5 cut(s) 5, 76, 317, 350, 362
DpnI GATC 5 cut(s) 152, 189, 206, 216, 228
DpnII GATC 5 cut(s) 150, 187, 204, 214, 226
Ecl136II GAGCTC 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 352
Eco31I GGTCTC 1 cut(s) 310
Eco53kI GAGCTC 1 cut(s) 350
EcoICRI GAGCTC 1 cut(s) 350
EcoRI GAATTC 2 cut(s) 239, 252
EcoT38I GRGCYC 1 cut(s) 352
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 1 cut(s) 64
FaiI YATR 8 cut(s) 62, 97, 110, 143, 178, 258, 260, 322
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 1 cut(s) 397
FatI CATG 1 cut(s) 60
FauNDI CATATG 1 cut(s) 258
FokI GGATG 1 cut(s) 91
FriOI GRGCYC 1 cut(s) 352
FspBI CTAG 1 cut(s) 249
GlaI GCGC 1 cut(s) 199
HaeIII GGCC 1 cut(s) 362
HapII CCGG 3 cut(s) 19, 73, 113
HhaI GCGC 1 cut(s) 200
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 6 cut(s) 14, 51, 157, 170, 410, 417
HpaII CCGG 3 cut(s) 19, 73, 113
Hpy188I TCNGA 4 cut(s) 33, 150, 204, 209
Hpy188III TCNNGA 6 cut(s) 61, 154, 224, 309, 345, 414
Hpy99I CGWCG 3 cut(s) 346, 374, 377
HpyAV CCTTC 1 cut(s) 373
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 198
Kzo9I GATC 5 cut(s) 150, 187, 204, 214, 226
LpnPI CCDG 3 cut(s) 32, 86, 126
LweI GCATC 1 cut(s) 54
MaeI CTAG 1 cut(s) 249
MalI GATC 5 cut(s) 152, 189, 206, 216, 228
MboI GATC 5 cut(s) 150, 187, 204, 214, 226
MboII GAAGA 2 cut(s) 286, 294
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 2 cut(s) 352, 396
MluCI AATT 4 cut(s) 88, 239, 252, 298
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 1 cut(s) 377
MroXI GAANNNNTTC 1 cut(s) 316
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 3 cut(s) 19, 73, 113
MspR9I CCNGG 1 cut(s) 19
MvnI CGCG 3 cut(s) 163, 198, 346
MwoI GCNNNNNNNGC 1 cut(s) 73
NciI CCSGG 1 cut(s) 19
NdeI CATATG 1 cut(s) 258
NdeII GATC 5 cut(s) 150, 187, 204, 214, 226
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 3 cut(s) 71, 82, 117
NruI TCGCGA 1 cut(s) 346
PagI TCATGA 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 5 cut(s) 14, 51, 157, 410, 417
PinAI ACCGGT 1 cut(s) 112
Ple19I CGATCG 1 cut(s) 190
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Psp124BI GAGCTC 1 cut(s) 352
PspN4I GGNNCC 3 cut(s) 71, 82, 117
PsuI RGATCY 1 cut(s) 226
PvuI CGATCG 1 cut(s) 190
RruI TCGCGA 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 352
Sau3AI GATC 5 cut(s) 150, 187, 204, 214, 226
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 19
SduI GDGCHC 2 cut(s) 352, 396
SetI ASST 5 cut(s) 250, 319, 334, 341, 352
SfaNI GCATC 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 4 cut(s) 88, 239, 252, 298
SsiI CCGC 3 cut(s) 42, 67, 161
SspMI CTAG 1 cut(s) 249
SstI GAGCTC 1 cut(s) 352
StyD4I CCNGG 1 cut(s) 17
TaqI TCGA 1 cut(s) 415
TasI AATT 4 cut(s) 88, 239, 252, 298
TfiI GAWTC 5 cut(s) 14, 51, 157, 410, 417
TspDTI ATGAA 3 cut(s) 93, 245, 309
TspGWI ACGGA 1 cut(s) 73
XapI RAATTY 2 cut(s) 239, 252
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.