Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005189

Physical Location & Seq

Genomic Coordinates Reverse (-)

75732620 .. 75734177

Gene Structure 1558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG440800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCTTCTCTTAAACTCTTGTTTTCTCTTGTTGTTCTCACTTCCGTGCTCTCCATTCAAGCATCTTATCCTCCTTTTGAAGATAACGGCGTCAATGTCCTTGAATCCAAGAAAGTTAACCTCTCTCTGTATTATGAAACTCTATGCCCATCCTGTGCAAGCTTCATTGTAAATGAACTAGCAGCTAAGTTATTTGATCCCGAAGGGGATCTCATAAGCATTGTCAACCTCAGGCTAGTTCCATATGGAAATGCTCAGGTCAAAGCACCTAACAAGACCATCGTTTGCCAGCATGGCCCAGACGAATGCTACTTTAACAGTATAGAAGCCTGTGCAATCCACCTCTGGTCAGACGTGGTAAGGCCATCTTTCTATAGCTTTTTTTTTACCATAAATCAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0002376 GO:0002474 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005775 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008285 GO:0009987 GO:0010033 GO:0015036 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019221 GO:0019882 GO:0019884 GO:0019886 GO:0023052 GO:0030054 GO:0031647 GO:0031974 GO:0034097 GO:0034341 GO:0042127 GO:0042221 GO:0042590 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0047134 GO:0048002 GO:0048145 GO:0048147 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051716 GO:0055114 GO:0060333 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071346

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT SapA

Protein Analysis

134

Amino Acids

14.96

Weight (kDa)

5.23

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	40 - 118	5.4e-23	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005189)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10880 FvH4_6g10910
malus_domestica	MD04G1163800.v1.1
prunus_persica	Prupe.6G283100_v2.0.a1
pyrus_communis	pycom04g14630
rosa_chinensis	RchiOBHm_Chr3g0462101 RchiOBHm_Chr3g0462161 RchiOBHm_Chr5g0067031 RchiOBHm_Chr5g0067041
rosa_laevigata	RLG00000024880
rosa_multiflora	Rmu_sc0006583.1_g000007
rosa_roxburghii	Rroxscaffold_1G00014070 Rroxscaffold_4G00297620 Rroxscaffold_6G00417710 Rroxscaffold_6G00417730
rosa_rugosa	Rorug03G0054600 Rorug03G0054600 Rorug03G0054600 Rorug03G0054700
rosa_samantha	Rh3AG113200 Rh3AG113400 Rh3CG118900 Rh3CG119200 Rh3DG118000 Rh3DG118300 Rh5AG440800 Rh5DG473100
rosa_wichuraiana	Rw3G009550 Rw3G009570 Rw5G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	191, 216
AcyI	GRCGYC	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	59, 80, 104
AjiI	CACGTC	1 cut(s)	355
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	3 cut(s)	162, 185, 378
AluI	AGCT	3 cut(s)	162, 185, 378
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	191, 216
AoxI	GGCC	2 cut(s)	295, 362
ApeKI	GCWGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	296
AxyI	CCTNAGG	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	3 cut(s)	157, 287, 373
BceAI	ACGGC	1 cut(s)	103
BfaI	CTAG	2 cut(s)	179, 236
BfmI	CTRYAG	1 cut(s)	373
BglI	GCCNNNNNGGC	1 cut(s)	294
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmgBI	CACGTC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	296
BmsI	GCATC	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	90
Bse21I	CCTNAGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	149
BseMII	CTCAG	2 cut(s)	244, 269
BseXI	GCAGC	1 cut(s)	194
BshFI	GGCC	2 cut(s)	297, 364
BsiHKAI	GWGCWC	1 cut(s)	51
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	2 cut(s)	297, 364
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	196, 208
BspANI	GGCC	2 cut(s)	297, 364
BspCNI	CTCAG	2 cut(s)	243, 268
BspPI	GGATC	2 cut(s)	191, 216
BssMI	GATC	2 cut(s)	196, 208
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	160, 290
BstDEI	CTNAG	3 cut(s)	186, 230, 255
BstF5I	GGATG	1 cut(s)	149
BstKTI	GATC	2 cut(s)	199, 211
BstMBI	GATC	2 cut(s)	196, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	297, 364
BtrI	CACGTC	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	149
Cac8I	GCNNGC	2 cut(s)	160, 290
Cfr13I	GGNCC	1 cut(s)	296
CseI	GACGC	1 cut(s)	79
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	8 cut(s)	5, 162, 185, 235, 297, 329, 364, 378
CviKI_1	RGCY	8 cut(s)	5, 162, 185, 235, 297, 329, 364, 378
DdeI	CTNAG	3 cut(s)	186, 230, 255
DpnI	GATC	2 cut(s)	198, 210
DpnII	GATC	2 cut(s)	196, 208
Eco81I	CCTNAGG	1 cut(s)	230
FaeI	CATG	1 cut(s)	296
FaiI	YATR	9 cut(s)	135, 145, 215, 244, 246, 294, 323, 375, 392
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FatI	CATG	1 cut(s)	292
FauNDI	CATATG	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	179, 236
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	297, 364
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	296
HincII	GTYRAC	2 cut(s)	118, 226
HindII	GTYRAC	2 cut(s)	118, 226
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	1 cut(s)	104
HpaI	GTTAAC	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	118, 226
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	2 cut(s)	118, 226
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	2 cut(s)	158, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	3 cut(s)	186, 230, 255
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	296
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	196, 208
LpnPI	CCDG	7 cut(s)	166, 217, 242, 302, 312, 331, 343
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	2 cut(s)	179, 236
MaeII	ACGT	1 cut(s)	354
MalI	GATC	2 cut(s)	198, 210
MboI	GATC	2 cut(s)	196, 208
MboII	GAAGA	1 cut(s)	92
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	51
MnlI	CCTC	4 cut(s)	81, 131, 239, 353
MseI	TTAA	3 cut(s)	12, 117, 315
MslI	CAYNNNNRTG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	311
MwoI	GCNNNNNNNGC	1 cut(s)	294
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	2 cut(s)	196, 208
NlaIII	CATG	1 cut(s)	296
OliI	CACNNNNGTG	1 cut(s)	44
PctI	GAATGC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	12, 117, 315
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	2 cut(s)	196, 208
Sau96I	GGNCC	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	1 cut(s)	71
SfcI	CTRYAG	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	44
SspMI	CTAG	2 cut(s)	179, 236
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	3 cut(s)	12, 117, 315
Tru9I	TTAA	3 cut(s)	12, 117, 315
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	150, 154, 189
TspGWI	ACGGA	1 cut(s)	34
XspI	CTAG	2 cut(s)	179, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.