RLG00000024880
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0005189
Physical Location & Seq
Reverse (-)
40010556 .. 40012541
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024880

Sequence Viewer

Length: 348 bp
ATGGCTTCCCATAAGTTCTTCTCCATCACTGTTCTAACAGCTTTGCTCTCGCTCTGCACCAATGCTCTGTCTCGTACGGAATACAATTGCTCTTCTCAGGAAGTTAACCTAACTATATATTATGACACTCTTAGCCCGTACTGTGAGGAATTCATTGTATATGAGCTTCCAAAGGCATTTGAGCTGGAGCTCATGCACATTATCAACCTCCGTCTAGTACCATATGGAAATGCTTACATCCAAGAACCTAACAACACCATCATTTGCCAGCTTCTACTACGATACGCTAATGAAACAAAGCACCTAGATCCTCATACAAATGTGTGTGCCATGGGTTGTCATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

116

Amino Acids

13.22

Weight (kDa)

5.39

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 36 - 90 9.8e-10 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 302
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 3 cut(s) 76, 140, 219
AluBI AGCT 5 cut(s) 41, 166, 184, 190, 271
AluI AGCT 5 cut(s) 41, 166, 184, 190, 271
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 149
BanII GRGCYC 1 cut(s) 192
BarI GAAGNNNNNNTAC 2 cut(s) 150, 182
Bbv12I GWGCWC 1 cut(s) 192
BccI CCATC 2 cut(s) 32, 266
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 2 cut(s) 215, 305
BpmI CTGGAG 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 192
BsiWI CGTACG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 1 cut(s) 307
Bsp19I CCATGG 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 109
BspPI GGATC 1 cut(s) 302
BspQI GCTCTTC 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 31, 143
Bst6I CTCTTC 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 2 cut(s) 96, 131
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 237
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 269
Csp6I GTAC 3 cut(s) 75, 139, 218
CviAII CATG 2 cut(s) 193, 331
CviJI RGCY 7 cut(s) 5, 41, 135, 166, 184, 190, 271
CviKI_1 RGCY 7 cut(s) 5, 41, 135, 166, 184, 190, 271
CviQI GTAC 3 cut(s) 75, 139, 218
DdeI CTNAG 2 cut(s) 96, 131
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 2 cut(s) 196, 334
FatI CATG 2 cut(s) 192, 330
FauNDI CATATG 1 cut(s) 223
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 192
FspBI CTAG 2 cut(s) 215, 305
GsuI CTGGAG 1 cut(s) 206
Hin1II CATG 2 cut(s) 196, 334
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HpaI GTTAAC 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 106
HpyCH4III ACNGT 2 cut(s) 31, 143
HpyCH4V TGCA 2 cut(s) 57, 196
HpyF3I CTNAG 2 cut(s) 96, 131
Hsp92II CATG 2 cut(s) 196, 334
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 1 cut(s) 307
LguI GCTCTTC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 3 cut(s) 83, 170, 281
MaeI CTAG 2 cut(s) 215, 305
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 2 cut(s) 10, 84
MfeI CAATTG 1 cut(s) 85
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 2 cut(s) 85, 149
MnlI CCTC 3 cut(s) 139, 218, 321
MseI TTAA 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 318
MunI CAATTG 1 cut(s) 85
NcoI CCATGG 1 cut(s) 330
NdeI CATATG 1 cut(s) 223
NdeII GATC 1 cut(s) 307
NlaIII CATG 2 cut(s) 196, 334
PciSI GCTCTTC 1 cut(s) 97
Pfl23II CGTACG 1 cut(s) 74
Psp124BI GAGCTC 1 cut(s) 192
PspLI CGTACG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 3 cut(s) 76, 140, 219
RsaNI GTAC 3 cut(s) 75, 139, 218
RseI CAYNNNNRTG 1 cut(s) 318
SacI GAGCTC 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 105
Sau3AI GATC 1 cut(s) 307
SduI GDGCHC 1 cut(s) 192
SetI ASST 9 cut(s) 43, 111, 168, 186, 192, 210, 250, 273, 306
SmiMI CAYNNNNRTG 1 cut(s) 318
Sse9I AATT 2 cut(s) 85, 149
SspMI CTAG 2 cut(s) 215, 305
SstI GAGCTC 1 cut(s) 192
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 2 cut(s) 31, 143
TasI AATT 2 cut(s) 85, 149
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 142, 306
TspGWI ACGGA 2 cut(s) 92, 200
TspRI CASTG 1 cut(s) 34
XapI RAATTY 1 cut(s) 149
XspI CTAG 2 cut(s) 215, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.