Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005189

Physical Location & Seq

Genomic Coordinates Forward (+)

9159046 .. 9160352

Gene Structure 1307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G009550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTTCTCTTAAGCTCTTGTTTTCCCTTCTTGTTCTCACTTCCGTGCTCTCCATTCAAGCATCTTATCCTTCTTTTGAAGATAACGGCGTCAATGTCCTTGAATCCAAGAAAGTTAACCTCTCTCTGTATTATGAAACTCTATGCCCATCCTGTGCGAGCTTCATTGTAAATGAACTAGCAGCTAAGTTATTCGATCCCGAAGGGGATCTCATAAGCATTGTCAACCTCAAAGCCTGTGCAATCCACCTCTGGTCAGACGTGAAGCGGCATTTCAAGTTCATTCATTGTCTTGAGAGTAAACTTATTGAAGGACTGCACTCCTCGAAAGAATATGCTTGGGAATCTTGTTGTGTAAAACTTAAGATGGATTCGGATCGTTTAGGAAAGTGCTACAGCAGTGGATATGAGAAGAAGCTTATACTTGAAAATGCTAAAGAAACAGACCACCTTGTTCCGCCTCATGAGTACGTACCATGGGTGGTTGTTAATGGACAACCGCTAAAGGATGATTACCTAAATTTTGTGAGGTATATCTGCAACGCTTACAAAGACAGTCCGAAACGAAAGGCTTGCAGATCATATCCACACAACATCAATTCAGGTGGAAAGGCAAACTCGAGCCTGGAAGGATGCTATAAAGGTGAAGAACGCGGGGGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0002376 GO:0002474 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005775 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008285 GO:0009987 GO:0010033 GO:0015036 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019221 GO:0019882 GO:0019884 GO:0019886 GO:0023052 GO:0030054 GO:0031647 GO:0031974 GO:0034097 GO:0034341 GO:0042127 GO:0042221 GO:0042590 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0047134 GO:0048002 GO:0048145 GO:0048147 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051716 GO:0055114 GO:0060333 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071346

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT SapA

Protein Analysis

221

Amino Acids

24.86

Weight (kDa)

7.53

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005189)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10880 FvH4_6g10910
malus_domestica	MD04G1163800.v1.1
prunus_persica	Prupe.6G283100_v2.0.a1
pyrus_communis	pycom04g14630
rosa_chinensis	RchiOBHm_Chr3g0462101 RchiOBHm_Chr3g0462161 RchiOBHm_Chr5g0067031 RchiOBHm_Chr5g0067041
rosa_laevigata	RLG00000024880
rosa_multiflora	Rmu_sc0006583.1_g000007
rosa_roxburghii	Rroxscaffold_1G00014070 Rroxscaffold_4G00297620 Rroxscaffold_6G00417710 Rroxscaffold_6G00417730
rosa_rugosa	Rorug03G0054600 Rorug03G0054600 Rorug03G0054600 Rorug03G0054700
rosa_samantha	Rh3AG113200 Rh3AG113400 Rh3CG118900 Rh3CG119200 Rh3DG118000 Rh3DG118300 Rh5AG440800 Rh5DG473100
rosa_wichuraiana	Rw3G009550 Rw3G009570 Rw5G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	654
AciI	CCGC	4 cut(s)	268, 458, 500, 654
AclWI	GGATC	3 cut(s)	191, 216, 384
AcsI	RAATTY	1 cut(s)	520
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	2 cut(s)	470, 474
AflII	CTTAAG	2 cut(s)	11, 362
AgsI	TTSAA	6 cut(s)	59, 80, 104, 277, 311, 428
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	624
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	5 cut(s)	16, 162, 185, 418, 663
AluI	AGCT	5 cut(s)	16, 162, 185, 418, 663
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	3 cut(s)	191, 216, 384
Ama87I	CYCGRG	1 cut(s)	619
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	520
AsuHPI	GGTGA	1 cut(s)	656
AvaI	CYCGRG	1 cut(s)	619
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	2 cut(s)	157, 361
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	2 cut(s)	555, 589
BciT130I	CCWGG	1 cut(s)	626
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	394
BfrI	CTTAAG	2 cut(s)	11, 362
BisI	GCNGC	2 cut(s)	183, 269
BlsI	GCNGC	2 cut(s)	184, 270
Bme1390I	CCNGG	1 cut(s)	626
BmeT110I	CYCGRG	1 cut(s)	619
BmgBI	CACGTC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	626
BmsI	GCATC	2 cut(s)	71, 623
BpuEI	CTTGAG	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	472
BsaBI	GATNNNNATC	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	476
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	626
BseDI	CCNNGG	1 cut(s)	476
BseGI	GGATG	3 cut(s)	149, 514, 638
BseJI	GATNNNNATC	1 cut(s)	375
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	654
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	619
BsoBI	CYCGRG	1 cut(s)	619
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	196, 208, 376, 578
Bsp19I	CCATGG	1 cut(s)	476
BspACI	CCGC	4 cut(s)	268, 458, 500, 654
BspFNI	CGCG	1 cut(s)	654
BspHI	TCATGA	1 cut(s)	463
BspPI	GGATC	3 cut(s)	191, 216, 384
BspTI	CTTAAG	2 cut(s)	11, 362
BssECI	CCNNGG	1 cut(s)	476
BssMI	GATC	4 cut(s)	196, 208, 376, 578
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	476
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	1 cut(s)	557
BstACI	GRCGYC	1 cut(s)	90
BstAFI	CTTAAG	2 cut(s)	11, 362
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	2 cut(s)	160, 574
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	1 cut(s)	476
BstF5I	GGATG	3 cut(s)	149, 514, 638
BstFNI	CGCG	1 cut(s)	654
BstKTI	GATC	4 cut(s)	199, 211, 379, 581
BstMBI	GATC	4 cut(s)	196, 208, 376, 578
BstMWI	GCNNNNNNNGC	1 cut(s)	660
BstNI	CCWGG	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	624
BstSFI	CTRYAG	1 cut(s)	394
BstSNI	TACGTA	1 cut(s)	472
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BtgI	CCRYGG	1 cut(s)	476
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	149, 514, 638
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	2 cut(s)	160, 574
CciI	TCATGA	1 cut(s)	463
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	469, 473
CspCI	CAANNNNNGTGG	2 cut(s)	586, 621
CviAII	CATG	2 cut(s)	464, 477
CviJI	RGCY	9 cut(s)	5, 16, 162, 185, 236, 418, 572, 624, 663
CviKI_1	RGCY	9 cut(s)	5, 16, 162, 185, 236, 418, 572, 624, 663
CviQI	GTAC	2 cut(s)	469, 473
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	4 cut(s)	198, 210, 378, 580
DpnII	GATC	4 cut(s)	196, 208, 376, 578
EciI	GGCGGA	1 cut(s)	447
Eco105I	TACGTA	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	619
EcoRII	CCWGG	1 cut(s)	624
EcoT14I	CCWWGG	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	476
FaeI	CATG	2 cut(s)	467, 480
FatI	CATG	2 cut(s)	463, 476
FauI	CCCGC	1 cut(s)	647
Fnu4HI	GCNGC	2 cut(s)	183, 269
FokI	GGATG	3 cut(s)	136, 521, 645
Fsp4HI	GCNGC	2 cut(s)	183, 269
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	2 cut(s)	183, 269
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	467, 480
HincII	GTYRAC	2 cut(s)	118, 226
HindII	GTYRAC	2 cut(s)	118, 226
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	3 cut(s)	104, 344, 371
HpaI	GTTAAC	1 cut(s)	118
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	3 cut(s)	118, 226, 302
Hpy188I	TCNGA	3 cut(s)	259, 376, 561
Hpy188III	TCNNGA	3 cut(s)	200, 293, 464
Hpy8I	GTNNAC	3 cut(s)	118, 226, 302
HpyAV	CCTTC	5 cut(s)	38, 81, 197, 305, 623
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	2 cut(s)	261, 471
HpyCH4V	TGCA	4 cut(s)	242, 319, 540, 576
HpyF10VI	GCNNNNNNNGC	1 cut(s)	660
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	2 cut(s)	261, 471
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	467, 480
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	196, 208, 376, 578
LmnI	GCTCC	1 cut(s)	660
LpnPI	CCDG	6 cut(s)	166, 238, 250, 588, 611, 638
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	2 cut(s)	71, 623
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	2 cut(s)	261, 471
MalI	GATC	4 cut(s)	198, 210, 378, 580
MboI	GATC	4 cut(s)	196, 208, 376, 578
MboII	GAAGA	3 cut(s)	92, 424, 659
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	2 cut(s)	520, 598
MnlI	CCTC	6 cut(s)	131, 239, 260, 334, 471, 522
MseI	TTAA	4 cut(s)	12, 117, 363, 489
MslI	CAYNNNNRTG	1 cut(s)	44
MspCI	CTTAAG	2 cut(s)	11, 362
MspR9I	CCNGG	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	626
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	1 cut(s)	660
NcoI	CCATGG	1 cut(s)	476
NdeII	GATC	4 cut(s)	196, 208, 376, 578
NlaIII	CATG	2 cut(s)	467, 480
OliI	CACNNNNGTG	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	619
PagI	TCATGA	1 cut(s)	463
PfeI	GAWTC	3 cut(s)	104, 344, 371
PkrI	GCNGC	2 cut(s)	184, 270
Ppu21I	YACGTR	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	624
PspXI	VCTCGAGB	1 cut(s)	619
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	2 cut(s)	470, 474
RsaNI	GTAC	2 cut(s)	469, 473
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	4 cut(s)	12, 117, 363, 489
SatI	GCNGC	2 cut(s)	183, 269
Sau3AI	GATC	4 cut(s)	196, 208, 376, 578
ScrFI	CCNGG	1 cut(s)	626
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	2 cut(s)	71, 623
SfcI	CTRYAG	1 cut(s)	394
Sfr274I	CTCGAG	1 cut(s)	619
SlaI	CTCGAG	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	4 cut(s)	11, 293, 362, 619
SmoI	CTYRAG	4 cut(s)	11, 293, 362, 619
SnaBI	TACGTA	1 cut(s)	472
Sse9I	AATT	2 cut(s)	520, 598
SsiI	CCGC	4 cut(s)	268, 458, 500, 654
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	624
StyI	CCWWGG	1 cut(s)	476
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	2 cut(s)	264, 474
TaqI	TCGA	3 cut(s)	195, 326, 620
TasI	AATT	2 cut(s)	520, 598
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	3 cut(s)	104, 344, 371
Tru1I	TTAA	4 cut(s)	12, 117, 363, 489
Tru9I	TTAA	4 cut(s)	12, 117, 363, 489
TscAI	CASTG	1 cut(s)	406
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	5 cut(s)	150, 154, 189, 271, 275
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	406
Vha464I	CTTAAG	2 cut(s)	11, 362
XapI	RAATTY	1 cut(s)	520
XhoI	CTCGAG	1 cut(s)	619
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.