Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005189

Physical Location & Seq

Genomic Coordinates Reverse (-)

39375894 .. 39377170

Gene Structure 1277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTTCTCTTAAGCTCTTGTTTTCCCTTGTTGTTCTCACTTCCGTGCTCTCCATTCAAGCGTCTTATCCTTCTTTTGAAGATAACCGCGTCAATGTCCTTGAATCCAAGAAAGTTAACCTCTCTCTGTATTATGAAACTCTATGCCCATCCTGTGCGAGCTTCATTGTAAATGAACTAGCAGCCAAGTTATTCGATCCCGAGGAGGATCTCATAAGCATTGTCAACCTGAGGCTAGTTCCATATGGAAATGCTCAGGTCAAAGCACCTAACAGGACCATCGTTTGCCAGCATGGCCCAGACGAATGCTACTTTAACAGTATAGAAGCCTGTGCAATCCACCTTTGGTCAGACGTGAACAATGTAGATATGGTTTTACTTTATCTTCTTCACATCTTATCTCGTTGTATCGATGCGAAGCGGCATTTCAAGTTCATTCATTGTCTTGAGAGTAAACTTATTGAAGGACTGCACTCCTCGAAAGAATATGTTTGGGAATCTTGTTGTGTAAAACTTAAGATGGATTCGGATCGTTTGGGAAAGTGCTACCGCAGTGGATATGAGAAGAAGCTTATACTTGAAAATGCTAAAGAAACAGACCACCTTGTTCCGCCTCATGAGTACGTACCATGGGTGGTTGTTAATGGACAACCGCTAAAGGATGATTACCTAAATTTTGTGAGGTATGTTTGCAACGCTTACAAAGACAGTCCGAAACCAAAGGCTTGCAGATCATATCCACACAACATCAATTCAGGTGGAAAGGCAAACTCGAGCCTAGAAGGATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0002376 GO:0002474 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005775 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008285 GO:0009987 GO:0010033 GO:0015036 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019221 GO:0019882 GO:0019884 GO:0019886 GO:0023052 GO:0030054 GO:0031647 GO:0031974 GO:0034097 GO:0034341 GO:0042127 GO:0042221 GO:0042590 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0047134 GO:0048002 GO:0048145 GO:0048147 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051716 GO:0055114 GO:0060333 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071346

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT SapA

Protein Analysis

263

Amino Acids

29.84

Weight (kDa)

6.74

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	40 - 169	4.3e-24	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005189)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g10880 FvH4_6g10910
malus_domestica	MD04G1163800.v1.1
prunus_persica	Prupe.6G283100_v2.0.a1
pyrus_communis	pycom04g14630
rosa_chinensis	RchiOBHm_Chr3g0462101 RchiOBHm_Chr3g0462161 RchiOBHm_Chr5g0067031 RchiOBHm_Chr5g0067041
rosa_laevigata	RLG00000024880
rosa_multiflora	Rmu_sc0006583.1_g000007
rosa_roxburghii	Rroxscaffold_1G00014070 Rroxscaffold_4G00297620 Rroxscaffold_6G00417710 Rroxscaffold_6G00417730
rosa_rugosa	Rorug03G0054600 Rorug03G0054600 Rorug03G0054600 Rorug03G0054700
rosa_samantha	Rh3AG113200 Rh3AG113400 Rh3CG118900 Rh3CG119200 Rh3DG118000 Rh3DG118300 Rh5AG440800 Rh5DG473100
rosa_wichuraiana	Rw3G009550 Rw3G009570 Rw5G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	90
AciI	CCGC	5 cut(s)	88, 421, 550, 611, 653
AclWI	GGATC	3 cut(s)	191, 216, 537
AcsI	RAATTY	1 cut(s)	673
AfaI	GTAC	2 cut(s)	623, 627
AflII	CTTAAG	2 cut(s)	11, 515
AgsI	TTSAA	6 cut(s)	59, 80, 104, 430, 464, 581
AjiI	CACGTC	1 cut(s)	355
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	3 cut(s)	16, 162, 571
AluI	AGCT	3 cut(s)	16, 162, 571
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	3 cut(s)	191, 216, 537
Ama87I	CYCGRG	2 cut(s)	200, 772
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	673
AspS9I	GGNCC	2 cut(s)	276, 296
AvaI	CYCGRG	2 cut(s)	200, 772
AvaII	GGWCC	1 cut(s)	276
AxyI	CCTNAGG	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	3 cut(s)	157, 287, 514
BfaI	CTAG	3 cut(s)	179, 236, 779
BfrI	CTTAAG	2 cut(s)	11, 515
BglI	GCCNNNNNGGC	1 cut(s)	294
BisI	GCNGC	2 cut(s)	183, 422
BlsI	GCNGC	2 cut(s)	184, 423
Bme18I	GGWCC	1 cut(s)	276
BmeT110I	CYCGRG	2 cut(s)	200, 772
BmgBI	CACGTC	1 cut(s)	355
BmgT120I	GGNCC	2 cut(s)	276, 296
BmsI	GCATC	2 cut(s)	403, 776
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	467
Bsa29I	ATCGAT	1 cut(s)	411
BsaAI	YACGTR	1 cut(s)	625
BsaBI	GATNNNNATC	1 cut(s)	528
BsaJI	CCNNGG	2 cut(s)	201, 629
Bse21I	CCTNAGG	1 cut(s)	230
Bse8I	GATNNNNATC	1 cut(s)	528
BseCI	ATCGAT	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	201, 629
BseGI	GGATG	3 cut(s)	149, 667, 791
BseJI	GATNNNNATC	1 cut(s)	528
BseMII	CTCAG	2 cut(s)	221, 269
BseRI	GAGGAG	2 cut(s)	218, 466
BseXI	GCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	455
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	297
BshVI	ATCGAT	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	2 cut(s)	200, 772
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	297
BsoBI	CYCGRG	2 cut(s)	200, 772
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	196, 208, 529, 731
Bsp19I	CCATGG	1 cut(s)	629
BspACI	CCGC	5 cut(s)	88, 421, 550, 611, 653
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	222, 268
BspDI	ATCGAT	1 cut(s)	411
BspFNI	CGCG	1 cut(s)	90
BspHI	TCATGA	1 cut(s)	616
BspPI	GGATC	3 cut(s)	191, 216, 537
BspTI	CTTAAG	2 cut(s)	11, 515
BssECI	CCNNGG	2 cut(s)	201, 629
BssMI	GATC	4 cut(s)	196, 208, 529, 731
BssT1I	CCWWGG	1 cut(s)	629
Bst4CI	ACNGT	2 cut(s)	320, 710
BstAFI	CTTAAG	2 cut(s)	11, 515
BstBAI	YACGTR	1 cut(s)	625
BstC8I	GCNNGC	3 cut(s)	160, 290, 727
BstDEI	CTNAG	2 cut(s)	230, 255
BstDSI	CCRYGG	1 cut(s)	629
BstF5I	GGATG	3 cut(s)	149, 667, 791
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	4 cut(s)	199, 211, 532, 734
BstMBI	GATC	4 cut(s)	196, 208, 529, 731
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstSNI	TACGTA	1 cut(s)	625
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	411
Bsu36I	CCTNAGG	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	297
BsuTUI	ATCGAT	1 cut(s)	411
BtgI	CCRYGG	1 cut(s)	629
BtrI	CACGTC	1 cut(s)	355
BtsCI	GGATG	3 cut(s)	149, 667, 791
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	3 cut(s)	160, 290, 727
CciI	TCATGA	1 cut(s)	616
Cfr13I	GGNCC	2 cut(s)	276, 296
ClaI	ATCGAT	1 cut(s)	411
CseI	GACGC	2 cut(s)	51, 79
Csp6I	GTAC	2 cut(s)	622, 626
CspCI	CAANNNNNGTGG	2 cut(s)	739, 774
CviAII	CATG	3 cut(s)	293, 617, 630
CviQI	GTAC	2 cut(s)	622, 626
DdeI	CTNAG	2 cut(s)	230, 255
DpnI	GATC	4 cut(s)	198, 210, 531, 733
DpnII	GATC	4 cut(s)	196, 208, 529, 731
EciI	GGCGGA	1 cut(s)	600
Eco105I	TACGTA	1 cut(s)	625
Eco130I	CCWWGG	1 cut(s)	629
Eco47I	GGWCC	1 cut(s)	276
Eco81I	CCTNAGG	1 cut(s)	230
Eco88I	CYCGRG	2 cut(s)	200, 772
EcoT14I	CCWWGG	1 cut(s)	629
ErhI	CCWWGG	1 cut(s)	629
FaeI	CATG	3 cut(s)	296, 620, 633
FatI	CATG	3 cut(s)	292, 616, 629
FauNDI	CATATG	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	183, 422
FokI	GGATG	2 cut(s)	136, 674
Fsp4HI	GCNGC	2 cut(s)	183, 422
FspBI	CTAG	3 cut(s)	179, 236, 779
GluI	GCNGC	2 cut(s)	183, 422
HaeIII	GGCC	1 cut(s)	297
HgaI	GACGC	2 cut(s)	51, 79
Hin1II	CATG	3 cut(s)	296, 620, 633
HincII	GTYRAC	2 cut(s)	118, 226
HindII	GTYRAC	2 cut(s)	118, 226
HindIII	AAGCTT	1 cut(s)	569
HinfI	GANTC	3 cut(s)	104, 497, 524
HpaI	GTTAAC	1 cut(s)	118
Hpy166II	GTNNAC	4 cut(s)	118, 226, 358, 455
Hpy188I	TCNGA	3 cut(s)	352, 529, 714
Hpy188III	TCNNGA	3 cut(s)	200, 446, 617
Hpy8I	GTNNAC	4 cut(s)	118, 226, 358, 455
HpyAV	CCTTC	3 cut(s)	81, 458, 776
HpyCH4III	ACNGT	2 cut(s)	320, 710
HpyCH4IV	ACGT	2 cut(s)	354, 624
HpyCH4V	TGCA	4 cut(s)	335, 472, 693, 729
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	2 cut(s)	230, 255
HpySE526I	ACGT	2 cut(s)	354, 624
Hsp92II	CATG	3 cut(s)	296, 620, 633
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	196, 208, 529, 731
LpnPI	CCDG	8 cut(s)	166, 242, 242, 259, 302, 312, 343, 741
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	2 cut(s)	403, 776
MaeI	CTAG	3 cut(s)	179, 236, 779
MaeII	ACGT	2 cut(s)	354, 624
MalI	GATC	4 cut(s)	198, 210, 531, 733
MboI	GATC	4 cut(s)	196, 208, 529, 731
MboII	GAAGA	4 cut(s)	92, 377, 380, 577
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	2 cut(s)	673, 751
MnlI	CCTC	7 cut(s)	131, 196, 199, 225, 487, 624, 675
MseI	TTAA	5 cut(s)	12, 117, 315, 516, 642
MslI	CAYNNNNRTG	1 cut(s)	44
MspCI	CTTAAG	2 cut(s)	11, 515
Mva1269I	GAATGC	1 cut(s)	311
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	294
NcoI	CCATGG	1 cut(s)	629
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	4 cut(s)	196, 208, 529, 731
NlaIII	CATG	3 cut(s)	296, 620, 633
OliI	CACNNNNGTG	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	772
PagI	TCATGA	1 cut(s)	616
PctI	GAATGC	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	104, 497, 524
PkrI	GCNGC	2 cut(s)	184, 423
Ppu21I	YACGTR	1 cut(s)	625
PspPI	GGNCC	2 cut(s)	276, 296
PspXI	VCTCGAGB	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	2 cut(s)	623, 627
RsaNI	GTAC	2 cut(s)	622, 626
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	5 cut(s)	12, 117, 315, 516, 642
SatI	GCNGC	2 cut(s)	183, 422
Sau3AI	GATC	4 cut(s)	196, 208, 529, 731
Sau96I	GGNCC	2 cut(s)	276, 296
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	2 cut(s)	403, 776
Sfr274I	CTCGAG	1 cut(s)	772
SinI	GGWCC	1 cut(s)	276
SlaI	CTCGAG	1 cut(s)	772
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	4 cut(s)	11, 446, 515, 772
SmoI	CTYRAG	4 cut(s)	11, 446, 515, 772
SnaBI	TACGTA	1 cut(s)	625
Sse9I	AATT	2 cut(s)	673, 751
SsiI	CCGC	5 cut(s)	88, 421, 550, 611, 653
SspMI	CTAG	3 cut(s)	179, 236, 779
StyI	CCWWGG	1 cut(s)	629
TaaI	ACNGT	2 cut(s)	320, 710
TaiI	ACGT	2 cut(s)	357, 627
TaqI	TCGA	4 cut(s)	195, 411, 479, 773
TasI	AATT	2 cut(s)	673, 751
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	3 cut(s)	104, 497, 524
Tru1I	TTAA	5 cut(s)	12, 117, 315, 516, 642
Tru9I	TTAA	5 cut(s)	12, 117, 315, 516, 642
TscAI	CASTG	1 cut(s)	559
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	5 cut(s)	150, 154, 189, 424, 428
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	559
Vha464I	CTTAAG	2 cut(s)	11, 515
VpaK11BI	GGWCC	1 cut(s)	276
XapI	RAATTY	1 cut(s)	673
XhoI	CTCGAG	1 cut(s)	772
XspI	CTAG	3 cut(s)	179, 236, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.