Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007208

Physical Location & Seq

Genomic Coordinates Forward (+)

6696437 .. 6697923

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11241.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGACGGTGGATCTTCCTCCGGCGGGAACTTCAAGCTCTACGAGCAGCTGGAGTTGCAGGAGTTTCCGGACAAGTTCGTGATCAAATCCGTCGAAGCTCCCGATCAAGGCTTCGTGATCGGCCGCCGCGACGGCGCGATTGAACCGCTTAACGCTGATTCTTCTTCGTCAAACCCGTCGAAAACGTCGACGATATATGGAGTCGTCGGAACGATCAGACTGCTCGCAGGAAATTACTTGATTGTTATAACTTCTCGGATAGAAGTTGGGAAGTATCTTGGCTTCCCTGTTTACCGGGTGACCTCTATGAATTTTCTTTCCTGCAATCAGGTGTTGAAGCTCTCAACTGTTCAAGAAAAAAAAGATGAAGCTTACTTCATGGCTCTGTTGAAAACAGTCCAATCAACTCCAGGGCTGTACTTCTCATACGAAACAGATTTAACATTGAACAAGCAAAGAAGAAGCAAGTTGATTGGAGGTTGGATGGCCAAACCAATATGGAAGCAGGTTGGTGAAAACTCGGAATTATGCGTTTACTGTGAATTGAATATGCTCCGAAAGACTATTGAGAGTAATCATGTCAAGTATCATAATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

200

Amino Acids

22.34

Weight (kDa)

8.66

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	66 - 156	1.1e-16	SacI homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11241
malus_domestica	MD12G1169400.v1.1 MD12G1169500.v1.1 MD12G1171200.v1.1 MD12G1171300.v1.1
pyrus_communis	pycom04g14100 pycom12g10980 pycom12g16070 pycom12g16170 pycom16g21050
rosa_chinensis	RchiOBHm_Chr1g0321071 RchiOBHm_Chr1g0352571 RchiOBHm_Chr3g0454191 RchiOBHm_Chr3g0462761 RchiOBHm_Chr4g0407511 RchiOBHm_Chr7g0208621
rosa_laevigata	RLG00000017724 RLG00000035314
rosa_multiflora	Rmu_co8257277.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415040 Rroxscaffold_7G00196780
rosa_samantha	Rh1AG112600 Rh1CG178800 Rh7AG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
Acc36I	ACCTGC	1 cut(s)	496
AccI	GTMKAC	1 cut(s)	188
AccII	CGCG	2 cut(s)	129, 137
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	4 cut(s)	24, 124, 127, 146
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	2 cut(s)	121, 486
AcsI	RAATTY	1 cut(s)	310
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	2 cut(s)	24, 107
AgsI	TTSAA	7 cut(s)	34, 143, 337, 353, 391, 448, 547
AjnI	CCWGG	1 cut(s)	409
AluBI	AGCT	5 cut(s)	37, 49, 98, 340, 371
AluI	AGCT	5 cut(s)	37, 49, 98, 340, 371
AlwI	GGATC	1 cut(s)	19
Aor13HI	TCCGGA	1 cut(s)	67
AoxI	GGCC	2 cut(s)	121, 486
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	310, 524
BalI	TGGCCA	1 cut(s)	488
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	478
BceAI	ACGGC	1 cut(s)	148
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	1 cut(s)	411
BclI	TGATCA	1 cut(s)	81
BcnI	CCSGG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	496
BglI	GCCNNNNNGGC	1 cut(s)	132
BisI	GCNGC	3 cut(s)	47, 124, 127
BlsI	GCNGC	3 cut(s)	48, 125, 128
Bme1390I	CCNGG	2 cut(s)	296, 411
BmrFI	CCNGG	2 cut(s)	296, 411
BpmI	CTGGAG	2 cut(s)	71, 393
BpuMI	CCSGG	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	410
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 107
BseAI	TCCGGA	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	1 cut(s)	489
BseLI	CCNNNNNNNGG	2 cut(s)	24, 107
BseX3I	CGGCCG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	58
Bsh1236I	CGCG	2 cut(s)	129, 137
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	123, 488
BsiEI	CGRYCG	1 cut(s)	124
BsiSI	CCGG	3 cut(s)	21, 68, 295
BslI	CCNNNNNNNGG	2 cut(s)	24, 107
BsnI	GGCC	2 cut(s)	123, 488
Bsp13I	TCCGGA	1 cut(s)	67
Bsp143I	GATC	5 cut(s)	11, 81, 103, 117, 213
BspACI	CCGC	4 cut(s)	24, 124, 127, 146
BspANI	GGCC	2 cut(s)	123, 488
BspEI	TCCGGA	1 cut(s)	67
BspFNI	CGCG	2 cut(s)	129, 137
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	5 cut(s)	11, 81, 103, 117, 213
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	4 cut(s)	8, 349, 397, 539
BstC8I	GCNNGC	1 cut(s)	225
BstEII	GGTNACC	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	489
BstFNI	CGCG	2 cut(s)	129, 137
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	5 cut(s)	14, 84, 106, 120, 216
BstMBI	GATC	5 cut(s)	11, 81, 103, 117, 213
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 55, 132
BstNI	CCWGG	1 cut(s)	411
BstPI	GGTNACC	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	294, 409
BstUI	CGCG	2 cut(s)	129, 137
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BstZI	CGGCCG	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	123, 488
BtsCI	GGATG	1 cut(s)	489
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	1 cut(s)	225
CfoI	GCGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	2 cut(s)	379, 578
CviQI	GTAC	1 cut(s)	418
DpnI	GATC	5 cut(s)	13, 83, 105, 119, 215
DpnII	GATC	5 cut(s)	11, 81, 103, 117, 213
EaeI	YGGCCR	2 cut(s)	121, 486
EagI	CGGCCG	1 cut(s)	121
EclXI	CGGCCG	1 cut(s)	121
Eco52I	CGGCCG	1 cut(s)	121
Eco91I	GGTNACC	1 cut(s)	298
EcoO65I	GGTNACC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	409
FaeI	CATG	2 cut(s)	382, 581
FatI	CATG	2 cut(s)	378, 577
FauI	CCCGC	1 cut(s)	17
FbaI	TGATCA	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	3 cut(s)	47, 124, 127
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	3 cut(s)	47, 124, 127
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	3 cut(s)	47, 124, 127
GsuI	CTGGAG	2 cut(s)	71, 393
HaeIII	GGCC	2 cut(s)	123, 488
HapII	CCGG	3 cut(s)	21, 68, 295
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	382, 581
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	2 cut(s)	158, 201
HpaII	CCGG	3 cut(s)	21, 68, 295
HphI	GGTGA	2 cut(s)	310, 524
Hpy166II	GTNNAC	3 cut(s)	189, 292, 535
Hpy188I	TCNGA	5 cut(s)	209, 218, 258, 523, 557
Hpy188III	TCNNGA	5 cut(s)	68, 79, 101, 115, 353
Hpy8I	GTNNAC	3 cut(s)	189, 292, 535
Hpy99I	CGWCG	6 cut(s)	95, 134, 181, 190, 193, 209
HpyCH4III	ACNGT	4 cut(s)	8, 349, 397, 539
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	58, 324
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 55, 132
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	2 cut(s)	382, 581
HspAI	GCGC	1 cut(s)	135
Kpn2I	TCCGGA	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	5 cut(s)	11, 81, 103, 117, 213
LmnI	GCTCC	2 cut(s)	103, 558
Lsp1109I	GCAGC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	5 cut(s)	13, 83, 105, 119, 215
MboI	GATC	5 cut(s)	11, 81, 103, 117, 213
MboII	GAAGA	4 cut(s)	6, 153, 156, 471
MflI	RGATCY	1 cut(s)	11
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	4 cut(s)	232, 310, 524, 542
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	2 cut(s)	187, 461
MnlI	CCTC	3 cut(s)	28, 313, 470
Mox20I	TGGCCA	1 cut(s)	488
MroI	TCCGGA	1 cut(s)	67
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	2 cut(s)	150, 440
Msp20I	TGGCCA	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	3 cut(s)	21, 68, 295
MspR9I	CCNGG	2 cut(s)	296, 411
MvaI	CCWGG	1 cut(s)	411
MvnI	CGCG	2 cut(s)	129, 137
MwoI	GCNNNNNNNGC	3 cut(s)	43, 55, 132
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	5 cut(s)	11, 81, 103, 117, 213
NlaIII	CATG	2 cut(s)	382, 581
NmuCI	GTSAC	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	4 cut(s)	99, 126, 173, 185
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	3 cut(s)	48, 125, 128
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	409
PspEI	GGTNACC	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	49
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SalI	GTCGAC	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	150, 440
SatI	GCNGC	3 cut(s)	47, 124, 127
Sau3AI	GATC	5 cut(s)	11, 81, 103, 117, 213
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	2 cut(s)	296, 411
SgrDI	CGTCGACG	1 cut(s)	187
Sse9I	AATT	4 cut(s)	232, 310, 524, 542
SsiI	CCGC	4 cut(s)	24, 124, 127, 146
StyD4I	CCNGG	2 cut(s)	294, 409
TaaI	ACNGT	4 cut(s)	8, 349, 397, 539
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	3 cut(s)	93, 179, 188
TasI	AATT	4 cut(s)	232, 310, 524, 542
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	2 cut(s)	126, 129
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	2 cut(s)	150, 440
Tru9I	TTAA	2 cut(s)	150, 440
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	3 cut(s)	323, 367, 381
TspGWI	ACGGA	1 cut(s)	79
XapI	RAATTY	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.