Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007208

Physical Location & Seq

Genomic Coordinates Forward (+)

13076126 .. 13076878

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGACGGCGGTGGACCTTTCTCCTGCGGAAGTTTCAAGCTGTACGAGGGGCTGGAGTTGCAGGAGTTTCAGGACAAGTTCGTGATCAAATCCGTCGCGGCCCCGGATCGAGGCTTCTCGATCGACCGCGGCGGCGGCGCCATTGAGCCGCTTAACGGTGGTTCTTCTTCTTCTTCTCCAAGTCCGTCGAAAACCTCGACGATATACGGAGTGGCGGGATCGATCAGATTGCTTGCAGGAAATTATGTTCTTGGAATAATGTCGCGGACAGAAGTTGGGACTTATCTTGGCTTCCCTGTTTATCGAGTGACGTCAATGAGGTTTCCGTCCTGCAACGAGGGTATGAAGAATTCAACTGCTCAGGAGATACGTTTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

127

Amino Acids

13.41

Weight (kDa)

7.74

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11241
malus_domestica	MD12G1169400.v1.1 MD12G1169500.v1.1 MD12G1171200.v1.1 MD12G1171300.v1.1
pyrus_communis	pycom04g14100 pycom12g10980 pycom12g16070 pycom12g16170 pycom16g21050
rosa_chinensis	RchiOBHm_Chr1g0321071 RchiOBHm_Chr1g0352571 RchiOBHm_Chr3g0454191 RchiOBHm_Chr3g0462761 RchiOBHm_Chr4g0407511 RchiOBHm_Chr7g0208621
rosa_laevigata	RLG00000017724 RLG00000035314
rosa_multiflora	Rmu_co8257277.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415040 Rroxscaffold_7G00196780
rosa_samantha	Rh1AG112600 Rh1CG178800 Rh7AG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	137
AccII	CGCG	3 cut(s)	98, 129, 265
AclWI	GGATC	2 cut(s)	114, 226
AcsI	RAATTY	1 cut(s)	349
AcyI	GRCGYC	2 cut(s)	138, 311
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	2 cut(s)	110, 155
AgsI	TTSAA	2 cut(s)	37, 354
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
AlwI	GGATC	2 cut(s)	114, 226
AoxI	GGCC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	14, 100
AsuC2I	CCSGG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	137
BceAI	ACGGC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	104
BfoI	RGCGCY	1 cut(s)	141
BisI	GCNGC	5 cut(s)	99, 130, 133, 136, 149
BlsI	GCNGC	5 cut(s)	100, 131, 134, 137, 150
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	2 cut(s)	14, 100
BmiI	GGNNCC	2 cut(s)	102, 139
BmrFI	CCNGG	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	104
Bsa29I	ATCGAT	1 cut(s)	221
BsaHI	GRCGYC	2 cut(s)	138, 311
BsaJI	CCNNGG	2 cut(s)	102, 127
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 155
BseCI	ATCGAT	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	102, 127
BseLI	CCNNNNNNNGG	2 cut(s)	110, 155
BseMII	CTCAG	1 cut(s)	374
Bsh1236I	CGCG	3 cut(s)	98, 129, 265
Bsh1285I	CGRYCG	2 cut(s)	123, 127
BshFI	GGCC	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	137
BshVI	ATCGAT	1 cut(s)	221
BsiEI	CGRYCG	2 cut(s)	123, 127
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	110, 155
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	101
Bsp143I	GATC	5 cut(s)	84, 106, 120, 218, 222
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	373
BspDI	ATCGAT	1 cut(s)	221
BspFNI	CGCG	3 cut(s)	98, 129, 265
BspLI	GGNNCC	2 cut(s)	102, 139
BspPI	GGATC	2 cut(s)	114, 226
BspT107I	GGYRCC	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	102, 127
BssMI	GATC	5 cut(s)	84, 106, 120, 218, 222
BssNI	GRCGYC	2 cut(s)	138, 311
Bst4CI	ACNGT	1 cut(s)	158
BstACI	GRCGYC	2 cut(s)	138, 311
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	127
BstFNI	CGCG	3 cut(s)	98, 129, 265
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	5 cut(s)	87, 109, 123, 221, 225
BstMBI	GATC	5 cut(s)	84, 106, 120, 218, 222
BstMCI	CGRYCG	2 cut(s)	123, 127
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 135
BstSCI	CCNGG	1 cut(s)	102
BstUI	CGCG	3 cut(s)	98, 129, 265
Bsu15I	ATCGAT	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	101
BsuTUI	ATCGAT	1 cut(s)	221
BtgI	CCRYGG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	14, 100
Cfr42I	CCGCGG	1 cut(s)	130
ClaI	ATCGAT	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	43
CviJI	RGCY	6 cut(s)	40, 52, 101, 114, 148, 291
CviKI_1	RGCY	6 cut(s)	40, 52, 101, 114, 148, 291
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	360
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	5 cut(s)	86, 108, 122, 220, 224
DpnII	GATC	5 cut(s)	84, 106, 120, 218, 222
Eco47I	GGWCC	1 cut(s)	14
EcoRI	GAATTC	1 cut(s)	349
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
FaiI	YATR	3 cut(s)	205, 246, 344
FaqI	GGGAC	1 cut(s)	292
FauI	CCCGC	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	5 cut(s)	99, 130, 133, 136, 149
Fsp4HI	GCNGC	5 cut(s)	99, 130, 133, 136, 149
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	5 cut(s)	99, 130, 133, 136, 149
GsuI	CTGGAG	1 cut(s)	74
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	104
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	2 cut(s)	138, 311
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HpaII	CCGG	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	4 cut(s)	71, 82, 118, 362
Hpy8I	GTNNAC	1 cut(s)	14
Hpy99I	CGWCG	3 cut(s)	98, 190, 202
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	2 cut(s)	311, 370
HpyCH4V	TGCA	3 cut(s)	61, 236, 333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 135
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	2 cut(s)	311, 370
Hsp92I	GRCGYC	2 cut(s)	138, 311
HspAI	GCGC	1 cut(s)	138
KasI	GGCGCC	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	84
KspI	CCGCGG	1 cut(s)	130
Kzo9I	GATC	5 cut(s)	84, 106, 120, 218, 222
LpnPI	CCDG	9 cut(s)	37, 38, 47, 56, 117, 222, 309, 343, 347
MaeII	ACGT	2 cut(s)	311, 370
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	5 cut(s)	86, 108, 122, 220, 224
MboI	GATC	5 cut(s)	84, 106, 120, 218, 222
MboII	GAAGA	5 cut(s)	156, 159, 162, 165, 358
MluCI	AATT	2 cut(s)	241, 349
Mly113I	GGCGCC	1 cut(s)	138
MnlI	CCTC	5 cut(s)	40, 104, 205, 312, 331
MseI	TTAA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	104
MvnI	CGCG	3 cut(s)	98, 129, 265
MwoI	GCNNNNNNNGC	2 cut(s)	58, 135
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	5 cut(s)	84, 106, 120, 218, 222
NlaIV	GGNNCC	2 cut(s)	102, 139
NmuCI	GTSAC	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PkrI	GCNGC	5 cut(s)	100, 131, 134, 137, 150
Ple19I	CGATCG	1 cut(s)	123
PluTI	GGCGCC	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	102, 139
PspPI	GGNCC	2 cut(s)	14, 100
PvuI	CGATCG	1 cut(s)	123
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SacII	CCGCGG	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	5 cut(s)	99, 130, 133, 136, 149
Sau3AI	GATC	5 cut(s)	84, 106, 120, 218, 222
Sau96I	GGNCC	2 cut(s)	14, 100
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	6 cut(s)	19, 42, 197, 314, 323, 373
SfoI	GGCGCC	1 cut(s)	139
Sfr303I	CCGCGG	1 cut(s)	130
SgrBI	CCGCGG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	14
Sse9I	AATT	2 cut(s)	241, 349
SspDI	GGCGCC	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	2 cut(s)	314, 373
TaqI	TCGA	7 cut(s)	109, 119, 123, 188, 197, 221, 304
TasI	AATT	2 cut(s)	241, 349
TauI	GCSGC	5 cut(s)	101, 132, 135, 138, 151
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	359, 364
TspGWI	ACGGA	4 cut(s)	82, 174, 222, 315
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	349
ZraI	GACGTC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.