Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007208

Physical Location & Seq

Genomic Coordinates Reverse (-)

25065483 .. 25067245

Gene Structure 1763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1169400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTGGAGAAGAGGAGCCAACCTTCATGGAGATGTTGCTAATTTTATTGAAACTGAGCGGTTGGTGGAGATTGAAGGTTTCCAGTCCTCGTTATTGCAGATTCGAGGTTCAATTCTGCTTCTTTGGGAGCAAATTGTTGACTTGAGCTATAAACCACAACTTAGAATTATTACTCATGAGCAGACGTCAAATGTTGTGGAGCGCCATTTTTTTGATCTTTTGCAAAGGTATGGAGAGACAATGGCAGTAGACCTAACTGATAAACATGACGATGAAGGTCAACTAAGCACGGCATTTTCTGCTGAAATGCAAAATCTACCAAACGTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

111

Amino Acids

12.77

Weight (kDa)

4.93

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	2 - 107	9.5e-29	SacI homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11241
malus_domestica	MD12G1169400.v1.1 MD12G1169500.v1.1 MD12G1171200.v1.1 MD12G1171300.v1.1
pyrus_communis	pycom04g14100 pycom12g10980 pycom12g16070 pycom12g16170 pycom16g21050
rosa_chinensis	RchiOBHm_Chr1g0321071 RchiOBHm_Chr1g0352571 RchiOBHm_Chr3g0454191 RchiOBHm_Chr3g0462761 RchiOBHm_Chr4g0407511 RchiOBHm_Chr7g0208621
rosa_laevigata	RLG00000017724 RLG00000035314
rosa_multiflora	Rmu_co8257277.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415040 Rroxscaffold_7G00196780
rosa_samantha	Rh1AG112600 Rh1CG178800 Rh7AG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	58
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	185
AgsI	TTSAA	3 cut(s)	50, 74, 111
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	204
BceAI	ACGGC	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	230
BfoI	RGCGCY	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	1 cut(s)	58
BspCNI	CTCAG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	16
BsrBI	CCGCTC	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	214
BssNI	GRCGYC	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	4
BstACI	GRCGYC	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstDEI	CTNAG	3 cut(s)	54, 161, 284
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	299
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	204
CspCI	CAANNNNNGTGG	2 cut(s)	177, 212
CviAII	CATG	3 cut(s)	26, 176, 266
CviJI	RGCY	2 cut(s)	17, 147
CviKI_1	RGCY	2 cut(s)	17, 147
DdeI	CTNAG	3 cut(s)	54, 161, 284
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	4
EarI	CTCTTC	1 cut(s)	4
FaeI	CATG	3 cut(s)	29, 179, 269
FaiI	YATR	5 cut(s)	27, 150, 177, 231, 267
FatI	CATG	3 cut(s)	25, 175, 265
FblI	GTMKAC	1 cut(s)	249
GlaI	GCGC	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	205
HhaI	GCGC	1 cut(s)	204
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	29, 179, 269
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	2 cut(s)	139, 281
HindII	GTYRAC	2 cut(s)	139, 281
HinfI	GANTC	1 cut(s)	100
Hpy166II	GTNNAC	3 cut(s)	139, 250, 281
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	3 cut(s)	139, 250, 281
HpyAV	CCTTC	3 cut(s)	32, 68, 269
HpyCH4IV	ACGT	2 cut(s)	185, 324
HpyCH4V	TGCA	3 cut(s)	97, 223, 310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	3 cut(s)	54, 161, 284
HpySE526I	ACGT	2 cut(s)	185, 324
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	3 cut(s)	29, 179, 269
HspAI	GCGC	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	3 cut(s)	14, 127, 199
LpnPI	CCDG	1 cut(s)	95
MaeII	ACGT	2 cut(s)	185, 324
MalI	GATC	1 cut(s)	216
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	21
MluCI	AATT	4 cut(s)	40, 111, 132, 165
MnlI	CCTC	4 cut(s)	5, 97, 98, 321
MslI	CAYNNNNRTG	2 cut(s)	30, 270
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	3 cut(s)	29, 179, 269
NlaIV	GGNNCC	1 cut(s)	16
PagI	TCATGA	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	16
RseI	CAYNNNNRTG	2 cut(s)	30, 270
Sau3AI	GATC	1 cut(s)	214
SgeI	CNNG	8 cut(s)	38, 94, 100, 116, 154, 188, 278, 301
SmiMI	CAYNNNNRTG	2 cut(s)	30, 270
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	4 cut(s)	40, 111, 132, 165
SsiI	CCGC	1 cut(s)	58
TaiI	ACGT	2 cut(s)	188, 327
TaqI	TCGA	1 cut(s)	103
TasI	AATT	4 cut(s)	40, 111, 132, 165
TfiI	GAWTC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	14, 288
XmiI	GTMKAC	1 cut(s)	249
ZraI	GACGTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.