Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007208

Physical Location & Seq

Genomic Coordinates Reverse (-)

64840036 .. 64841519

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035314

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGGCTTAATTATCGAGCTGCACTTAGCAATATCACCAATTTCAAAAGAGAGGCTTTTGGAGAGCATGCTTCTCAGTTCTCACTTTCTCAGTCAATATCAGAAGACTCTCTCTTTAAGAGAAGACGCAAGTTGATTGAAGGTTGGATGGCCAAACCAATATGGAAGCAGGTTGACCCTCGATTTGTATGGAACAAAAATCTTTTGGATGAACTTATCGAGTTCAAGTTGGATGGGTTTATTATTCCTCTTCTACAAGGAAATATCCTCAAGTCACAAATTTCCATATTCTCAAGGAGGTGTACCCATTGTCTAGATGGCCACATATGGACAAGAATGTGGAGAAGAGGAGCTAACCTTGAAGGAGATGTAGCTAACTTTATTGAAACCGAGCAATTGGCAGAGTTTGAAGGTTTCAAGTCCTCATTACTGCAGGGAACTTGTCTCGCAAATCTATGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

155

Amino Acids

17.77

Weight (kDa)

8.76

Isoelectric Point (pI)

61.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	44 - 135	2.7e-16	SacI homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11241
malus_domestica	MD12G1169400.v1.1 MD12G1169500.v1.1 MD12G1171200.v1.1 MD12G1171300.v1.1
pyrus_communis	pycom04g14100 pycom12g10980 pycom12g16070 pycom12g16170 pycom16g21050
rosa_chinensis	RchiOBHm_Chr1g0321071 RchiOBHm_Chr1g0352571 RchiOBHm_Chr3g0454191 RchiOBHm_Chr3g0462761 RchiOBHm_Chr4g0407511 RchiOBHm_Chr7g0208621
rosa_laevigata	RLG00000017724 RLG00000035314
rosa_multiflora	Rmu_co8257277.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415040 Rroxscaffold_7G00196780
rosa_samantha	Rh1AG112600 Rh1CG178800 Rh7AG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	160
AcoI	YGGCCR	2 cut(s)	150, 319
AcsI	RAATTY	1 cut(s)	279
AfaI	GTAC	1 cut(s)	304
AgsI	TTSAA	7 cut(s)	46, 140, 226, 362, 386, 410, 418
AluBI	AGCT	3 cut(s)	20, 353, 374
AluI	AGCT	3 cut(s)	20, 353, 374
Alw26I	GTCTC	1 cut(s)	449
AoxI	GGCC	2 cut(s)	150, 319
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	279
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AsuHPI	GGTGA	1 cut(s)	28
BalI	TGGCCA	2 cut(s)	152, 321
BbsI	GAAGAC	2 cut(s)	111, 130
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	3 cut(s)	142, 227, 311
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BpiI	GAAGAC	2 cut(s)	111, 130
BpuEI	CTTGAG	2 cut(s)	254, 277
BseGI	GGATG	3 cut(s)	153, 214, 238
BseMII	CTCAG	2 cut(s)	89, 104
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	7
BsgI	GTGCAG	1 cut(s)	6
BshFI	GGCC	2 cut(s)	152, 321
BsmAI	GTCTC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	152, 321
BspANI	GGCC	2 cut(s)	152, 321
BspCNI	CTCAG	2 cut(s)	88, 103
BspMAI	CTGCAG	1 cut(s)	435
BspMI	ACCTGC	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	255, 340
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	26, 75, 90
BstF5I	GGATG	3 cut(s)	153, 214, 238
BstMAI	GTCTC	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	431
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	2 cut(s)	111, 130
BsuRI	GGCC	2 cut(s)	152, 321
BtsCI	GGATG	3 cut(s)	153, 214, 238
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	69
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	7 cut(s)	7, 20, 56, 152, 321, 353, 374
CviKI_1	RGCY	7 cut(s)	7, 20, 56, 152, 321, 353, 374
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	3 cut(s)	26, 75, 90
EaeI	YGGCCR	2 cut(s)	150, 319
Eam1104I	CTCTTC	2 cut(s)	255, 340
EarI	CTCTTC	2 cut(s)	255, 340
FaeI	CATG	1 cut(s)	71
FaiI	YATR	7 cut(s)	69, 163, 190, 287, 326, 328, 457
FalI	AAGNNNNNCTT	2 cut(s)	40, 72
FatI	CATG	1 cut(s)	67
FauNDI	CATATG	1 cut(s)	326
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	3 cut(s)	160, 221, 245
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	152, 321
HgaI	GACGC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	107
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	175, 303
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	2 cut(s)	175, 303
HpyAV	CCTTC	3 cut(s)	134, 356, 404
HpyCH4V	TGCA	2 cut(s)	23, 433
HpyF3I	CTNAG	3 cut(s)	26, 75, 90
Hsp92II	CATG	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	2 cut(s)	155, 419
Lsp1109I	GCAGC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	273
MboII	GAAGA	4 cut(s)	116, 135, 242, 357
MfeI	CAATTG	1 cut(s)	395
MlsI	TGGCCA	2 cut(s)	152, 321
MluCI	AATT	4 cut(s)	10, 40, 279, 395
MluNI	TGGCCA	2 cut(s)	152, 321
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	2 cut(s)	125, 210
MnlI	CCTC	7 cut(s)	46, 189, 258, 278, 291, 341, 433
Mox20I	TGGCCA	2 cut(s)	152, 321
MscI	TGGCCA	2 cut(s)	152, 321
MseI	TTAA	2 cut(s)	9, 117
Msp20I	TGGCCA	2 cut(s)	152, 321
MunI	CAATTG	1 cut(s)	395
NdeI	CATATG	1 cut(s)	326
NlaIII	CATG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	273
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PstI	CTGCAG	1 cut(s)	435
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	9, 117
SatI	GCNGC	1 cut(s)	21
SchI	GAGTC	1 cut(s)	101
SetI	ASST	8 cut(s)	22, 145, 174, 302, 355, 360, 376, 415
SfcI	CTRYAG	1 cut(s)	431
SmlI	CTYRAG	2 cut(s)	269, 292
SmoI	CTYRAG	2 cut(s)	269, 292
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	4 cut(s)	10, 40, 279, 395
SspMI	CTAG	1 cut(s)	314
TaqI	TCGA	3 cut(s)	16, 181, 219
TasI	AATT	4 cut(s)	10, 40, 279, 395
Tru1I	TTAA	2 cut(s)	9, 117
Tru9I	TTAA	2 cut(s)	9, 117
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	1 cut(s)	225
XapI	RAATTY	1 cut(s)	279
XbaI	TCTAGA	1 cut(s)	313
XceI	RCATGY	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.