Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8257277.1

Orthogroup ID

OG0007208

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 716

Gene Structure 716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8257277.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 302 bp

gaaattacttgcttgtaataacttctcggatagaagttgggaactatcttggcttccctgtttaccgggtgacttctatgaagtttctttcctgcaatgaggtgttgaagctctcaactgctcaagaaaaaaaagatgaagcttacttcatggctttgttgaaaacagtccaatcaactccagggctgtacttttcatatgaaacagatttaacattaaactttcagagaagacgcaagttgattgaaggttggatgggcaaaccattatggaagcaggttggtggaaactcggaattatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

99

Amino Acids

11.46

Weight (kDa)

9.3

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11241
malus_domestica	MD12G1169400.v1.1 MD12G1169500.v1.1 MD12G1171200.v1.1 MD12G1171300.v1.1
pyrus_communis	pycom04g14100 pycom12g10980 pycom12g16070 pycom12g16170 pycom16g21050
rosa_chinensis	RchiOBHm_Chr1g0321071 RchiOBHm_Chr1g0352571 RchiOBHm_Chr3g0454191 RchiOBHm_Chr3g0462761 RchiOBHm_Chr4g0407511 RchiOBHm_Chr7g0208621
rosa_laevigata	RLG00000017724 RLG00000035314
rosa_multiflora	Rmu_co8257277.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415040 Rroxscaffold_7G00196780
rosa_samantha	Rh1AG112600 Rh1CG178800 Rh7AG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	108, 162, 247
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	2 cut(s)	111, 142
AluI	AGCT	2 cut(s)	111, 142
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	237
BccI	CCATC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	267
Bme1390I	CCNGG	2 cut(s)	67, 182
BmrFI	CCNGG	2 cut(s)	67, 182
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	66
BspMI	ACCTGC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	65, 180
BstV2I	GAAGAC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	260
BveI	ACCTGC	1 cut(s)	267
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	1 cut(s)	150
CviJI	RGCY	5 cut(s)	53, 111, 142, 154, 186
CviKI_1	RGCY	5 cut(s)	53, 111, 142, 154, 186
CviQI	GTAC	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	1 cut(s)	153
FaiI	YATR	6 cut(s)	79, 151, 198, 200, 270, 300
FatI	CATG	1 cut(s)	149
FauNDI	CATATG	1 cut(s)	198
FokI	GGATG	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	164
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	153
HindIII	AAGCTT	1 cut(s)	140
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	81
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	3 cut(s)	29, 227, 294
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	153
LpnPI	CCDG	6 cut(s)	71, 79, 105, 167, 194, 262
MaeIII	GTNAC	1 cut(s)	69
MboII	GAAGA	1 cut(s)	242
MluCI	AATT	2 cut(s)	3, 295
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	1 cut(s)	93
MseI	TTAA	2 cut(s)	211, 217
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	67, 182
MvaI	CCWGG	1 cut(s)	182
NciI	CCSGG	1 cut(s)	67
NdeI	CATATG	1 cut(s)	198
NlaIII	CATG	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	211, 217
ScrFI	CCNGG	2 cut(s)	67, 182
SetI	ASST	5 cut(s)	104, 113, 144, 252, 281
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	3, 295
StyD4I	CCNGG	2 cut(s)	65, 180
TaaI	ACNGT	1 cut(s)	168
TasI	AATT	2 cut(s)	3, 295
TatI	WGTACW	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	211, 217
Tru9I	TTAA	2 cut(s)	211, 217
TseFI	GTSAC	1 cut(s)	69
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	5 cut(s)	94, 138, 152, 185, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.