Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007208

Physical Location & Seq

Genomic Coordinates Forward (+)

19464149 .. 19465098

Gene Structure 950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG112600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAGTAAGATTCTTTTTCTAATGCACATTAACTTTCTTGTGGCAGCTGGACGGGTTTATTATTCCTCTTCTACAAGGAAATATCCTCAAGTCACAGATTTCCATATTCTCAAGGAGGTGTACCCGTCGTCTAGAATGTGGAGAAGAGGAGCTAACCTTGAAGGAGATGTAGCTAACTTTATTGAAACCGAGCAATTGGCAGAGTTTGAAGGTTTCAAGTCCTCATTACTGCAGCTAGTCATTTGTAGGAGCTATGGCAGAGATTACAAGCATCAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

93

Amino Acids

10.93

Weight (kDa)

9.17

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	44 - 70	1.3e-06	SacI homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11241
malus_domestica	MD12G1169400.v1.1 MD12G1169500.v1.1 MD12G1171200.v1.1 MD12G1171300.v1.1
pyrus_communis	pycom04g14100 pycom12g10980 pycom12g16070 pycom12g16170 pycom16g21050
rosa_chinensis	RchiOBHm_Chr1g0321071 RchiOBHm_Chr1g0352571 RchiOBHm_Chr3g0454191 RchiOBHm_Chr3g0462761 RchiOBHm_Chr4g0407511 RchiOBHm_Chr7g0208621
rosa_laevigata	RLG00000017724 RLG00000035314
rosa_multiflora	Rmu_co8257277.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415040 Rroxscaffold_7G00196780
rosa_samantha	Rh1AG112600 Rh1CG178800 Rh7AG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	122
AgsI	TTSAA	4 cut(s)	161, 185, 209, 217
AluBI	AGCT	5 cut(s)	47, 152, 173, 235, 252
AluI	AGCT	5 cut(s)	47, 152, 173, 235, 252
ApeKI	GCWGC	2 cut(s)	44, 232
BbvI	GCAGC	2 cut(s)	56, 244
BfaI	CTAG	2 cut(s)	132, 236
BfmI	CTRYAG	1 cut(s)	230
BisI	GCNGC	2 cut(s)	45, 233
BlsI	GCNGC	2 cut(s)	46, 234
BpuEI	CTTGAG	2 cut(s)	72, 95
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	56, 244
BspMAI	CTGCAG	1 cut(s)	234
Bst6I	CTCTTC	2 cut(s)	73, 139
BstSFI	CTRYAG	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	56, 244
Csp6I	GTAC	1 cut(s)	121
CviJI	RGCY	5 cut(s)	47, 152, 173, 235, 252
CviKI_1	RGCY	5 cut(s)	47, 152, 173, 235, 252
CviQI	GTAC	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	73, 139
EarI	CTCTTC	2 cut(s)	73, 139
FaiI	YATR	2 cut(s)	105, 255
Fnu4HI	GCNGC	2 cut(s)	45, 233
Fsp4HI	GCNGC	2 cut(s)	45, 233
FspBI	CTAG	2 cut(s)	132, 236
GluI	GCNGC	2 cut(s)	45, 233
HinfI	GANTC	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	132
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	155, 203
HpyCH4V	TGCA	2 cut(s)	25, 232
LmnI	GCTCC	2 cut(s)	149, 249
LpnPI	CCDG	1 cut(s)	33
Lsp1109I	GCAGC	2 cut(s)	56, 244
MaeI	CTAG	2 cut(s)	132, 236
MaeIII	GTNAC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	60, 156
MfeI	CAATTG	1 cut(s)	194
MluCI	AATT	1 cut(s)	194
MnlI	CCTC	5 cut(s)	76, 96, 109, 140, 232
MseI	TTAA	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	46, 234
PstI	CTGCAG	1 cut(s)	234
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	45, 233
SetI	ASST	8 cut(s)	49, 120, 154, 159, 175, 214, 237, 254
SfcI	CTRYAG	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	87, 110
SmoI	CTYRAG	2 cut(s)	87, 110
Sse9I	AATT	1 cut(s)	194
SspMI	CTAG	2 cut(s)	132, 236
TasI	AATT	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	2 cut(s)	44, 232
Tsp45I	GTSAC	1 cut(s)	91
XbaI	TCTAGA	1 cut(s)	131
XspI	CTAG	2 cut(s)	132, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.