Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007208

Physical Location & Seq

Genomic Coordinates Forward (+)

10348887 .. 10350884

Gene Structure 1998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42910

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGACGGTGGGTCTTCTTCTTCTTCTTCTTCATCTTCCGGCGGAAACTTCAAGCTCTACGAGAAGTTGGAGTTGCAGGAGTTTCCGGACAAGTTCGTCGTCAAATCAGTCGAAGCTCCCGATCAAGGCTTCGTGATCGCCCGCCGCGACGGGACTATCGAACCGCTTGACGGTGATTCTTCTTCTGCAAGTCCGTCCAAAACGTCGACGATATATGGAGTCGTCGGAACGATCAGATTGCTTGCAGGAAATTACTTGCTTGTAATAACTTCTCGGATAGAAGTTGGGAACTATCTTGGCTTCCCTGTTTACCGGGTGACTTCTATGAAGTTTCTTTCCTGCAATGAGGTGTTGAAGCTCTCAACTGCTCAAGAAAAAAAAGATGAAGCTTACTTCATGGCTTTGTTGAAAACAGTCCAATCAACTCCAGGGCTGTACTTTTCATATGAAACAGATTTAACATTAAACTTTCAGAGAAGACGCAAGTTGATTGAAGGTTGGATGGCCAAACCATTATGGAAGCAGGCTGACCCTCGATTTGTTTGGAACAAAAATCTTTTAGATGAGCTTATCGAGTTCAAGCTGGACGGGTTTATTATTCCTCTTCTACAAGGAAATATCCTCAAGTCACTGATTTCCTTTTCTATTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

217

Amino Acids

24.27

Weight (kDa)

7.71

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	72 - 207	3.5e-27	SacI homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11241
malus_domestica	MD12G1169400.v1.1 MD12G1169500.v1.1 MD12G1171200.v1.1 MD12G1171300.v1.1
pyrus_communis	pycom04g14100 pycom12g10980 pycom12g16070 pycom12g16170 pycom16g21050
rosa_chinensis	RchiOBHm_Chr1g0321071 RchiOBHm_Chr1g0352571 RchiOBHm_Chr3g0454191 RchiOBHm_Chr3g0462761 RchiOBHm_Chr4g0407511 RchiOBHm_Chr7g0208621
rosa_laevigata	RLG00000017724 RLG00000035314
rosa_multiflora	Rmu_co8257277.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415040 Rroxscaffold_7G00196780
rosa_samantha	Rh1AG112600 Rh1CG178800 Rh7AG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	206
AccII	CGCG	1 cut(s)	147
AccIII	TCCGGA	1 cut(s)	85
AciI	CCGC	4 cut(s)	42, 142, 145, 164
AcoI	YGGCCR	1 cut(s)	504
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	2 cut(s)	125, 170
AgsI	TTSAA	5 cut(s)	52, 355, 409, 494, 580
AhdI	GACNNNNNGTC	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	6 cut(s)	55, 116, 358, 389, 568, 583
AluI	AGCT	6 cut(s)	55, 116, 358, 389, 568, 583
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	1 cut(s)	504
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	185, 328
BalI	TGGCCA	1 cut(s)	506
BbsI	GAAGAC	2 cut(s)	6, 484
BccI	CCATC	1 cut(s)	496
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	314
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	2 cut(s)	314, 429
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmrFI	CCNGG	2 cut(s)	314, 429
BpiI	GAAGAC	2 cut(s)	6, 484
BpmI	CTGGAG	1 cut(s)	411
BpuEI	CTTGAG	2 cut(s)	354, 608
BpuMI	CCSGG	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	428
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 170
Bse3DI	GCAATG	1 cut(s)	349
BseAI	TCCGGA	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	1 cut(s)	507
BseLI	CCNNNNNNNGG	2 cut(s)	125, 170
BseMI	GCAATG	1 cut(s)	349
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	506
BsiSI	CCGG	3 cut(s)	39, 86, 313
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	2 cut(s)	125, 170
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	506
Bsp13I	TCCGGA	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	121, 135, 231
BspACI	CCGC	4 cut(s)	42, 142, 145, 164
BspANI	GGCC	1 cut(s)	506
BspEI	TCCGGA	1 cut(s)	85
BspFNI	CGCG	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	3 cut(s)	121, 135, 231
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	3 cut(s)	8, 173, 415
Bst6I	CTCTTC	1 cut(s)	609
BstC8I	GCNNGC	3 cut(s)	142, 243, 525
BstF5I	GGATG	1 cut(s)	507
BstFNI	CGCG	1 cut(s)	147
BstKTI	GATC	3 cut(s)	124, 138, 234
BstMBI	GATC	3 cut(s)	121, 135, 231
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	312, 427
BstUI	CGCG	1 cut(s)	147
BstV2I	GAAGAC	2 cut(s)	6, 484
BsuRI	GGCC	1 cut(s)	506
BtsCI	GGATG	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	629
Cac8I	GCNNGC	3 cut(s)	142, 243, 525
CseI	GACGC	1 cut(s)	489
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	1 cut(s)	397
CviQI	GTAC	1 cut(s)	436
DpnI	GATC	3 cut(s)	123, 137, 233
DpnII	GATC	3 cut(s)	121, 135, 231
DrdI	GACNNNNNNGTC	1 cut(s)	95
DriI	GACNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	95
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	609
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	609
EciI	GGCGGA	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	427
FaeI	CATG	1 cut(s)	400
FaiI	YATR	7 cut(s)	214, 216, 326, 398, 445, 447, 517
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	1 cut(s)	396
FauI	CCCGC	1 cut(s)	149
FauNDI	CATATG	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	1 cut(s)	514
Fsp4HI	GCNGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	145
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	506
HapII	CCGG	3 cut(s)	39, 86, 313
HgaI	GACGC	1 cut(s)	489
Hin1II	CATG	1 cut(s)	400
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	2 cut(s)	176, 219
HpaII	CCGG	3 cut(s)	39, 86, 313
HphI	GGTGA	2 cut(s)	185, 328
Hpy166II	GTNNAC	2 cut(s)	207, 310
Hpy188I	TCNGA	4 cut(s)	227, 236, 276, 474
Hpy188III	TCNNGA	4 cut(s)	86, 119, 133, 371
Hpy8I	GTNNAC	2 cut(s)	207, 310
Hpy99I	CGWCG	5 cut(s)	101, 152, 208, 211, 227
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	3 cut(s)	8, 173, 415
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	4 cut(s)	76, 188, 245, 342
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	400
Kpn2I	TCCGGA	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	121, 135, 231
LmnI	GCTCC	1 cut(s)	121
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	2 cut(s)	316, 627
MalI	GATC	3 cut(s)	123, 137, 233
MboI	GATC	3 cut(s)	121, 135, 231
MlsI	TGGCCA	1 cut(s)	506
MluCI	AATT	1 cut(s)	250
MluNI	TGGCCA	1 cut(s)	506
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	3 cut(s)	48, 205, 479
MnlI	CCTC	4 cut(s)	340, 543, 612, 632
Mox20I	TGGCCA	1 cut(s)	506
MroI	TCCGGA	1 cut(s)	85
MscI	TGGCCA	1 cut(s)	506
MseI	TTAA	3 cut(s)	458, 464, 652
Msp20I	TGGCCA	1 cut(s)	506
MspI	CCGG	3 cut(s)	39, 86, 313
MspR9I	CCNGG	2 cut(s)	314, 429
MvaI	CCWGG	1 cut(s)	429
MvnI	CGCG	1 cut(s)	147
NciI	CCSGG	1 cut(s)	314
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	3 cut(s)	121, 135, 231
NlaIII	CATG	1 cut(s)	400
NmuCI	GTSAC	2 cut(s)	316, 627
PcsI	WCGNNNNNNNCGW	3 cut(s)	117, 144, 156
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SalI	GTCGAC	1 cut(s)	205
SaqAI	TTAA	3 cut(s)	458, 464, 652
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	3 cut(s)	121, 135, 231
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	2 cut(s)	314, 429
SetI	ASST	9 cut(s)	57, 118, 206, 351, 360, 391, 499, 570, 585
SgrDI	CGTCGACG	1 cut(s)	205
SmlI	CTYRAG	2 cut(s)	369, 623
SmoI	CTYRAG	2 cut(s)	369, 623
Sse9I	AATT	1 cut(s)	250
SsiI	CCGC	4 cut(s)	42, 142, 145, 164
StyD4I	CCNGG	2 cut(s)	312, 427
TaaI	ACNGT	3 cut(s)	8, 173, 415
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	5 cut(s)	111, 159, 206, 535, 573
TasI	AATT	1 cut(s)	250
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	3 cut(s)	458, 464, 652
Tru9I	TTAA	3 cut(s)	458, 464, 652
TscAI	CASTG	1 cut(s)	636
TseFI	GTSAC	2 cut(s)	316, 627
Tsp45I	GTSAC	2 cut(s)	316, 627
TspDTI	ATGAA	6 cut(s)	21, 341, 385, 399, 432, 462
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	636
XmiI	GTMKAC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.