Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007208

Physical Location & Seq

Genomic Coordinates Reverse (-)

25191484 .. 25192607

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1171300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAATTGTGATTCTTCTTCTTCTGTAAGTCCGTCGAAAACCTCGACGATATACGGAGTGGCGCGAACGATCAGATTGCTTGCAGGAAATTATGTTCTTGTAATAACTTCGCGGACAGAAGTTGGGACTTATCTTGGCTTCCCTGTTTATCGAGTGACGTCGATGAGGTTTCTGTCCTGCAACGAGGGTATGAAGAATTCAACTGCTCAGGAGAAAAAGGATGAGGCATACTTCATGGCTCTGTTGAAAACAGTCCAATCAACTCCGGGGTTGTACTTCTCGTACGAGACTGATATAACACTAAACTTTCAAAGAAGATGTAAGTTAGTGGAAGGATGGACGGCCAAACCAATATGGAAGCAGGTTAGTTGGAAATTTGGAATATTTGGTTTATCGGGACCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

136

Amino Acids

15.17

Weight (kDa)

9.35

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	18 - 108	7.4e-16	SacI homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11241
malus_domestica	MD12G1169400.v1.1 MD12G1169500.v1.1 MD12G1171200.v1.1 MD12G1171300.v1.1
pyrus_communis	pycom04g14100 pycom12g10980 pycom12g16070 pycom12g16170 pycom16g21050
rosa_chinensis	RchiOBHm_Chr1g0321071 RchiOBHm_Chr1g0352571 RchiOBHm_Chr3g0454191 RchiOBHm_Chr3g0462761 RchiOBHm_Chr4g0407511 RchiOBHm_Chr7g0208621
rosa_laevigata	RLG00000017724 RLG00000035314
rosa_multiflora	Rmu_co8257277.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415040 Rroxscaffold_7G00196780
rosa_samantha	Rh1AG112600 Rh1CG178800 Rh7AG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	161
Acc36I	ACCTGC	1 cut(s)	352
AccII	CGCG	2 cut(s)	64, 112
AciI	CCGC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	196, 374
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	2 cut(s)	275, 284
AgsI	TTSAA	3 cut(s)	201, 247, 311
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
Alw26I	GTCTC	1 cut(s)	281
AoxI	GGCC	1 cut(s)	342
ApoI	RAATTY	2 cut(s)	196, 374
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	398
BccI	CCATC	1 cut(s)	330
BceAI	ACGGC	1 cut(s)	357
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	281
BfuAI	ACCTGC	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	2 cut(s)	226, 341
BseMII	CTCAG	1 cut(s)	221
Bsh1236I	CGCG	2 cut(s)	64, 112
BshFI	GGCC	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	266
BsiWI	CGTACG	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	2 cut(s)	64, 112
BspLI	GGNNCC	1 cut(s)	399
BspMI	ACCTGC	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	1 cut(s)	69
BssNI	GRCGYC	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	253
BstACI	GRCGYC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	226, 341
BstFNI	CGCG	2 cut(s)	64, 112
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	265
BstUI	CGCG	2 cut(s)	64, 112
BsuRI	GGCC	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	226, 341
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	81
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	274, 283
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	3 cut(s)	138, 239, 344
CviKI_1	RGCY	3 cut(s)	138, 239, 344
CviQI	GTAC	2 cut(s)	274, 283
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRI	GAATTC	1 cut(s)	196
FaeI	CATG	1 cut(s)	238
FaiI	YATR	7 cut(s)	52, 93, 191, 229, 236, 296, 355
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	234
FokI	GGATG	2 cut(s)	233, 348
GlaI	GCGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	1 cut(s)	266
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	238
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	266
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	2 cut(s)	209, 396
Hpy99I	CGWCG	3 cut(s)	37, 49, 163
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	83, 180
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	238
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	69
LpnPI	CCDG	6 cut(s)	69, 156, 190, 194, 279, 347
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	5 cut(s)	6, 9, 12, 205, 327
MluCI	AATT	4 cut(s)	4, 88, 196, 374
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	4 cut(s)	52, 159, 178, 217
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	267
MvnI	CGCG	2 cut(s)	64, 112
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	1 cut(s)	399
NmuCI	GTSAC	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	11
Pfl23II	CGTACG	1 cut(s)	282
PpuMI	RGGWCCY	1 cut(s)	398
Psp5II	RGGWCCY	1 cut(s)	398
PspLI	CGTACG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	398
PspPPI	RGGWCCY	1 cut(s)	398
RsaI	GTAC	2 cut(s)	275, 284
RsaNI	GTAC	2 cut(s)	274, 283
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	5 cut(s)	44, 161, 170, 366, 403
SinI	GGWCC	1 cut(s)	398
Sse9I	AATT	4 cut(s)	4, 88, 196, 374
SsiI	CCGC	1 cut(s)	112
SspI	AATATT	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	4 cut(s)	35, 44, 151, 161
TasI	AATT	4 cut(s)	4, 88, 196, 374
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	11
TseFI	GTSAC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	3 cut(s)	17, 206, 223
TspGWI	ACGGA	2 cut(s)	21, 69
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	2 cut(s)	196, 374
ZraI	GACGTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.