Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007208

Physical Location & Seq

Genomic Coordinates Reverse (-)

37289438 .. 37292486

Gene Structure 3049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGGAGTCTTTGATTGAGCTGGCCAAACGACTAGCTTTAGATGATGAAGAGAACTTCAATTTTTCTCTTCGTCATCGACAATTCGAGATCACCAAGGAGACCGCCAAGGACTGGGTTAAGCTCACCGTCCAAAACCGTCAGGCCAAGGTCTCGGTGGTCCCCTCTACCGCCTCTTTGGGATCTGCGTTTTGCTTGGAGCCGGATCGCGACCGCAAAGTGTCAACTGCTTCAGATTCATTTTCTCTAACTTCTTCCTTCACACATCTCTCAGCTGGAGCTTCCTCCTTTCCCTCCAGAAAGCATGCTTCTCAGTTCTCACTTTCTCAGTCAATATTAGAATACTCTCTCTTTCAGAGAAGACGCAAGTTGATTGAAGGTTGGATGGCCAAACCAATATGGAAGCAGGCTGACCCTCGATTTGTATGGAACAAAAATCTTTTGGATGAACTTATCGAGTTCAAGGTAAGATTTTCCTACTGTAAGGTACGATTAGTTCAAGGTCCAAATTATGTCGTTTCAGTTCCTTTAGTGTACGGGACACTTTACAGGGTAGTTGCATTTGTTAAAATTTACTATTCTATGTATGGACATTTCAAGAAGCTGGATGAAGAGATTAAAAGGGAGCTGCATCTTTGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

214

Amino Acids

24.97

Weight (kDa)

9.52

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11241
malus_domestica	MD12G1169400.v1.1 MD12G1169500.v1.1 MD12G1171200.v1.1 MD12G1171300.v1.1
pyrus_communis	pycom04g14100 pycom12g10980 pycom12g16070 pycom12g16170 pycom16g21050
rosa_chinensis	RchiOBHm_Chr1g0321071 RchiOBHm_Chr1g0352571 RchiOBHm_Chr3g0454191 RchiOBHm_Chr3g0462761 RchiOBHm_Chr4g0407511 RchiOBHm_Chr7g0208621
rosa_laevigata	RLG00000017724 RLG00000035314
rosa_multiflora	Rmu_co8257277.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415040 Rroxscaffold_7G00196780
rosa_samantha	Rh1AG112600 Rh1CG178800 Rh7AG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccII	CGCG	1 cut(s)	210
AciI	CCGC	3 cut(s)	105, 171, 214
AclWI	GGATC	2 cut(s)	190, 213
AcoI	YGGCCR	2 cut(s)	24, 387
AcsI	RAATTY	1 cut(s)	570
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	2 cut(s)	489, 536
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	5 cut(s)	61, 377, 463, 500, 598
AluBI	AGCT	7 cut(s)	22, 38, 124, 275, 281, 604, 628
AluI	AGCT	7 cut(s)	22, 38, 124, 275, 281, 604, 628
Alw26I	GTCTC	2 cut(s)	95, 157
AlwI	GGATC	2 cut(s)	190, 213
AoxI	GGCC	3 cut(s)	24, 144, 387
ApeKI	GCWGC	1 cut(s)	628
ApoI	RAATTY	1 cut(s)	570
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AspS9I	GGNCC	2 cut(s)	160, 503
AsuHPI	GGTGA	2 cut(s)	85, 118
AvaII	GGWCC	2 cut(s)	160, 503
BalI	TGGCCA	2 cut(s)	26, 389
BbsI	GAAGAC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	615
BccI	CCATC	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	95, 157
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	1 cut(s)	629
BlsI	GCNGC	1 cut(s)	630
Bme18I	GGWCC	2 cut(s)	160, 503
BmgT120I	GGNCC	2 cut(s)	160, 503
BmiI	GGNNCC	2 cut(s)	162, 201
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	640
BmuI	ACTGGG	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	367
BpmI	CTGGAG	2 cut(s)	280, 297
BsaI	GGTCTC	2 cut(s)	95, 157
BsaJI	CCNNGG	3 cut(s)	96, 108, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	119
BseDI	CCNNGG	3 cut(s)	96, 108, 147
BseGI	GGATG	3 cut(s)	390, 451, 613
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMII	CTCAG	3 cut(s)	285, 326, 341
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	615
Bsh1236I	CGCG	1 cut(s)	210
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	3 cut(s)	26, 146, 389
BsiEI	CGRYCG	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	2 cut(s)	146, 553
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	95, 157
BsmFI	GGGAC	2 cut(s)	146, 553
BsnI	GGCC	3 cut(s)	26, 146, 389
Bso31I	GGTCTC	2 cut(s)	95, 157
Bsp143I	GATC	3 cut(s)	90, 182, 205
Bsp68I	TCGCGA	1 cut(s)	210
BspACI	CCGC	3 cut(s)	105, 171, 214
BspANI	GGCC	3 cut(s)	26, 146, 389
BspCNI	CTCAG	3 cut(s)	284, 325, 340
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	162, 201
BspPI	GGATC	2 cut(s)	190, 213
BspTNI	GGTCTC	2 cut(s)	95, 157
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	96, 108, 147
BssMI	GATC	3 cut(s)	90, 182, 205
BssT1I	CCWWGG	3 cut(s)	96, 108, 147
Bst4CI	ACNGT	3 cut(s)	130, 140, 482
Bst6I	CTCTTC	3 cut(s)	45, 75, 606
BstC8I	GCNNGC	3 cut(s)	24, 306, 408
BstDEI	CTNAG	3 cut(s)	271, 312, 327
BstF5I	GGATG	3 cut(s)	390, 451, 613
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	3 cut(s)	93, 185, 208
BstMAI	GTCTC	2 cut(s)	95, 157
BstMBI	GATC	3 cut(s)	90, 182, 205
BstMCI	CGRYCG	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	308
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	615
BstV2I	GAAGAC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	3 cut(s)	26, 146, 389
BtsCI	GGATG	3 cut(s)	390, 451, 613
BtuMI	TCGCGA	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	24, 306, 408
Cfr13I	GGNCC	2 cut(s)	160, 503
CseI	GACGC	1 cut(s)	372
Csp6I	GTAC	2 cut(s)	488, 535
CviAII	CATG	1 cut(s)	305
CviQI	GTAC	2 cut(s)	488, 535
DdeI	CTNAG	3 cut(s)	271, 312, 327
DpnI	GATC	3 cut(s)	92, 184, 207
DpnII	GATC	3 cut(s)	90, 182, 205
EaeI	YGGCCR	2 cut(s)	24, 387
Eam1104I	CTCTTC	3 cut(s)	45, 75, 606
EarI	CTCTTC	3 cut(s)	45, 75, 606
Eco130I	CCWWGG	3 cut(s)	96, 108, 147
Eco31I	GGTCTC	2 cut(s)	95, 157
Eco47I	GGWCC	2 cut(s)	160, 503
Eco57I	CTGAAG	1 cut(s)	216
EcoT14I	CCWWGG	3 cut(s)	96, 108, 147
ErhI	CCWWGG	3 cut(s)	96, 108, 147
FaeI	CATG	1 cut(s)	308
FaiI	YATR	6 cut(s)	306, 400, 427, 513, 584, 588
FaqI	GGGAC	2 cut(s)	146, 553
FatI	CATG	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	629
FokI	GGATG	3 cut(s)	397, 458, 620
Fsp4HI	GCNGC	1 cut(s)	629
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	1 cut(s)	629
GsuI	CTGGAG	2 cut(s)	280, 297
HaeIII	GGCC	3 cut(s)	26, 146, 389
HapII	CCGG	1 cut(s)	203
HgaI	GACGC	1 cut(s)	372
Hin1II	CATG	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	2 cut(s)	8, 236
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	2 cut(s)	85, 118
Hpy166II	GTNNAC	2 cut(s)	225, 535
Hpy188I	TCNGA	2 cut(s)	235, 357
Hpy188III	TCNNGA	4 cut(s)	88, 209, 297, 598
Hpy8I	GTNNAC	2 cut(s)	225, 535
HpyAV	CCTTC	2 cut(s)	268, 371
HpyCH4III	ACNGT	3 cut(s)	130, 140, 482
HpyCH4V	TGCA	2 cut(s)	560, 631
HpyF3I	CTNAG	3 cut(s)	271, 312, 327
Hsp92II	CATG	1 cut(s)	308
Kzo9I	GATC	3 cut(s)	90, 182, 205
LmnI	GCTCC	3 cut(s)	199, 278, 625
LpnPI	CCDG	9 cut(s)	8, 100, 128, 216, 261, 310, 392, 535, 590
Lsp1109I	GCAGC	1 cut(s)	615
LweI	GCATC	1 cut(s)	640
MaeI	CTAG	1 cut(s)	35
MalI	GATC	3 cut(s)	92, 184, 207
MboI	GATC	3 cut(s)	90, 182, 205
MboII	GAAGA	5 cut(s)	62, 62, 246, 372, 623
MflI	RGATCY	1 cut(s)	182
MlsI	TGGCCA	2 cut(s)	26, 389
MluCI	AATT	4 cut(s)	61, 83, 508, 570
MluNI	TGGCCA	2 cut(s)	26, 389
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	362
MnlI	CCTC	5 cut(s)	175, 184, 295, 304, 426
Mox20I	TGGCCA	2 cut(s)	26, 389
MscI	TGGCCA	2 cut(s)	26, 389
MseI	TTAA	3 cut(s)	120, 567, 618
Msp20I	TGGCCA	2 cut(s)	26, 389
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	210
NdeII	GATC	3 cut(s)	90, 182, 205
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	2 cut(s)	162, 201
NruI	TCGCGA	1 cut(s)	210
NspI	RCATGY	1 cut(s)	308
PaeI	GCATGC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	236
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	630
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	162, 201
PspPI	GGNCC	2 cut(s)	160, 503
PsrI	GAACNNNNNNTAC	2 cut(s)	480, 512
PsuI	RGATCY	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	275
RruI	TCGCGA	1 cut(s)	210
RsaI	GTAC	2 cut(s)	489, 536
RsaNI	GTAC	2 cut(s)	488, 535
SaqAI	TTAA	3 cut(s)	120, 567, 618
SatI	GCNGC	1 cut(s)	629
Sau3AI	GATC	3 cut(s)	90, 182, 205
Sau96I	GGNCC	2 cut(s)	160, 503
SchI	GAGTC	1 cut(s)	17
SfaNI	GCATC	1 cut(s)	640
SinI	GGWCC	2 cut(s)	160, 503
SphI	GCATGC	1 cut(s)	308
Sse9I	AATT	4 cut(s)	61, 83, 508, 570
SsiI	CCGC	3 cut(s)	105, 171, 214
SspI	AATATT	1 cut(s)	336
SspMI	CTAG	1 cut(s)	35
StyI	CCWWGG	3 cut(s)	96, 108, 147
TaaI	ACNGT	3 cut(s)	130, 140, 482
TaqI	TCGA	4 cut(s)	79, 87, 418, 456
TasI	AATT	4 cut(s)	61, 83, 508, 570
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	3 cut(s)	120, 567, 618
Tru9I	TTAA	3 cut(s)	120, 567, 618
TseI	GCWGC	1 cut(s)	628
TspDTI	ATGAA	4 cut(s)	63, 228, 462, 624
Van91I	CCANNNNNTGG	1 cut(s)	114
VpaK11BI	GGWCC	2 cut(s)	160, 503
XapI	RAATTY	1 cut(s)	570
XceI	RCATGY	1 cut(s)	308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.