Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007208

Physical Location & Seq

Genomic Coordinates Reverse (-)

18496154 .. 18501270

Gene Structure 5117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16070.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAGGTTTCTGTCCTGCAACGAGGGTATGAAGAATTCAACTGCTCAGGAGAAAAAGGATGAGGCGTACTTCATGGCTCTGTTGAAAACAGTCCAATCAAATCTGGGGCTGTACTTCTCGTACGAGACTGATATAACACTAAAAAGATGTAAGTTAGTGGAAAGATGGATGGCCAAATCAATATGGAAGCAGGCCGACCCTCGATTTGTTTGGAACATAAATCTTTTGGACGAACTTATCGAGTATAAGCTTGATGGGTTCATTATTCCTCTAGTACAAGGAAATATCCTGAATTTACTGATTTCTTATGTGTATATCCCTCTCTCTCTCTCTCTAAGGTTGAGATTCAGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

119

Amino Acids

13.95

Weight (kDa)

9.14

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11241
malus_domestica	MD12G1169400.v1.1 MD12G1169500.v1.1 MD12G1171200.v1.1 MD12G1171300.v1.1
pyrus_communis	pycom04g14100 pycom12g10980 pycom12g16070 pycom12g16170 pycom16g21050
rosa_chinensis	RchiOBHm_Chr1g0321071 RchiOBHm_Chr1g0352571 RchiOBHm_Chr3g0454191 RchiOBHm_Chr3g0462761 RchiOBHm_Chr4g0407511 RchiOBHm_Chr7g0208621
rosa_laevigata	RLG00000017724 RLG00000035314
rosa_multiflora	Rmu_co8257277.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415040 Rroxscaffold_7G00196780
rosa_samantha	Rh1AG112600 Rh1CG178800 Rh7AG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	2 cut(s)	34, 292
AfaI	GTAC	4 cut(s)	68, 113, 122, 276
AgsI	TTSAA	2 cut(s)	39, 85
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	119
AoxI	GGCC	2 cut(s)	171, 192
ApoI	RAATTY	2 cut(s)	34, 292
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
BalI	TGGCCA	1 cut(s)	173
BccI	CCATC	3 cut(s)	159, 163, 248
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	45
BseGI	GGATG	2 cut(s)	64, 174
BseMII	CTCAG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	173, 194
BsiWI	CGTACG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	173, 194
BspANI	GGCC	2 cut(s)	173, 194
BspCNI	CTCAG	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	2 cut(s)	45, 335
BstF5I	GGATG	2 cut(s)	64, 174
BstMAI	GTCTC	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	173, 194
BtsCI	GGATG	2 cut(s)	64, 174
Cac8I	GCNNGC	1 cut(s)	192
Csp6I	GTAC	4 cut(s)	67, 112, 121, 275
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	5 cut(s)	77, 109, 173, 194, 250
CviKI_1	RGCY	5 cut(s)	77, 109, 173, 194, 250
CviQI	GTAC	4 cut(s)	67, 112, 121, 275
DdeI	CTNAG	2 cut(s)	45, 335
EaeI	YGGCCR	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	34
FaeI	CATG	1 cut(s)	76
FaiI	YATR	8 cut(s)	29, 74, 134, 184, 218, 246, 309, 315
FatI	CATG	1 cut(s)	72
FokI	GGATG	2 cut(s)	71, 181
FspBI	CTAG	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	173, 194
Hin1II	CATG	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	1 cut(s)	345
Hpy188I	TCNGA	1 cut(s)	350
Hpy188III	TCNNGA	2 cut(s)	47, 289
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	1 cut(s)	18
HpyF3I	CTNAG	2 cut(s)	45, 335
Hsp92II	CATG	1 cut(s)	76
LpnPI	CCDG	5 cut(s)	28, 32, 89, 176, 302
MaeI	CTAG	1 cut(s)	272
MboII	GAAGA	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	2 cut(s)	34, 292
MluNI	TGGCCA	1 cut(s)	173
MnlI	CCTC	5 cut(s)	16, 55, 210, 279, 330
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	173
NlaIII	CATG	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	345
Pfl23II	CGTACG	1 cut(s)	120
PspLI	CGTACG	1 cut(s)	120
RsaI	GTAC	4 cut(s)	68, 113, 122, 276
RsaNI	GTAC	4 cut(s)	67, 112, 121, 275
SetI	ASST	3 cut(s)	8, 252, 341
Sse9I	AATT	2 cut(s)	34, 292
SspMI	CTAG	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	202, 240
TasI	AATT	2 cut(s)	34, 292
TatI	WGTACW	2 cut(s)	111, 274
TfiI	GAWTC	1 cut(s)	345
TspDTI	ATGAA	3 cut(s)	44, 61, 250
XapI	RAATTY	2 cut(s)	34, 292
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.