Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007208

Physical Location & Seq

Genomic Coordinates Forward (+)

19213311 .. 19214804

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g21050.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGATCAATCCACTGGAAAAATCTCTCGTCATCCGGGTAGCCCCAAACAAAACCTCGACGATATACGGAGTGGCGGGAACGATCAGATTGCTTACAGGAAATTATGCTCTTGTAATAACTTCGCGGACGGAAGTTGGGACTTATCTCGGCTTCCCTGTTTATCGAGTGACCTCGATGAGGTTTCTGTCCTGCAACGATGGTATGAAGAATTCAATTGCTCAGGAGAAAAAGGATGAGACGTACTTCATGGCTCTGTTGAAAACAGTCCAATCAACTCCGGGGCTATACTTCTCGTACAAGACTGATATAACACTAAACTTTCAAAGAAGATGTAAGTTAGTGGAAGGATGGATGGCCAAACCAATATGGAAGCAGGCTGATCCTCGATTTGTTTGGAACAAAAATCTTTTGGACGAACTTATCAAGTATAAGTCGTCAGTTCTTCGCGCACAAATTTTATTGCTAATGCTCATTAATTTTCTCATGGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

165

Amino Acids

18.77

Weight (kDa)

9.81

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11241
malus_domestica	MD12G1169400.v1.1 MD12G1169500.v1.1 MD12G1171200.v1.1 MD12G1171300.v1.1
pyrus_communis	pycom04g14100 pycom12g10980 pycom12g16070 pycom12g16170 pycom16g21050
rosa_chinensis	RchiOBHm_Chr1g0321071 RchiOBHm_Chr1g0352571 RchiOBHm_Chr3g0454191 RchiOBHm_Chr3g0462761 RchiOBHm_Chr4g0407511 RchiOBHm_Chr7g0208621
rosa_laevigata	RLG00000017724 RLG00000035314
rosa_multiflora	Rmu_co8257277.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415040 Rroxscaffold_7G00196780
rosa_samantha	Rh1AG112600 Rh1CG178800 Rh7AG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	124, 447
AciI	CCGC	2 cut(s)	74, 124
AclWI	GGATC	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	2 cut(s)	208, 453
AfaI	GTAC	2 cut(s)	242, 296
AfiI	CCNNNNNNNGG	1 cut(s)	177
AgsI	TTSAA	3 cut(s)	213, 259, 323
AluBI	AGCT	1 cut(s)	491
AluI	AGCT	1 cut(s)	491
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	374
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	1 cut(s)	488
ApoI	RAATTY	2 cut(s)	208, 453
AseI	ATTAAT	1 cut(s)	474
AspLEI	GCGC	1 cut(s)	449
AsuC2I	CCSGG	2 cut(s)	35, 279
BalI	TGGCCA	1 cut(s)	356
BccI	CCATC	3 cut(s)	191, 342, 346
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	35, 279
BcoDI	GTCTC	1 cut(s)	230
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
Bme1390I	CCNGG	2 cut(s)	35, 279
BmrFI	CCNGG	2 cut(s)	35, 279
Bpu10I	CCTNAGC	1 cut(s)	219
BpuMI	CCSGG	2 cut(s)	35, 279
BsaJI	CCNNGG	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	4 cut(s)	30, 238, 353, 357
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	1 cut(s)	18
Bsh1236I	CGCG	2 cut(s)	124, 447
BshFI	GGCC	1 cut(s)	356
BsiSI	CCGG	2 cut(s)	34, 278
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	230
BsmBI	CGTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	356
Bsp143I	GATC	3 cut(s)	3, 81, 379
BspACI	CCGC	2 cut(s)	74, 124
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	2 cut(s)	124, 447
BspPI	GGATC	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	3 cut(s)	3, 81, 379
Bst4CI	ACNGT	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	1 cut(s)	219
BstENI	CCTNNNNNAGG	1 cut(s)	175
BstF5I	GGATG	4 cut(s)	30, 238, 353, 357
BstFNI	CGCG	2 cut(s)	124, 447
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	3 cut(s)	6, 84, 382
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	3 cut(s)	3, 81, 379
BstSCI	CCNGG	2 cut(s)	33, 277
BstUI	CGCG	2 cut(s)	124, 447
BsuRI	GGCC	1 cut(s)	356
BtsCI	GGATG	4 cut(s)	30, 238, 353, 357
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	375
CfoI	GCGC	1 cut(s)	449
Csp6I	GTAC	2 cut(s)	241, 295
CviAII	CATG	2 cut(s)	247, 484
CviJI	RGCY	7 cut(s)	41, 150, 251, 283, 356, 377, 491
CviKI_1	RGCY	7 cut(s)	41, 150, 251, 283, 356, 377, 491
CviQI	GTAC	2 cut(s)	241, 295
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	3 cut(s)	5, 83, 381
DpnII	GATC	3 cut(s)	3, 81, 379
EaeI	YGGCCR	1 cut(s)	354
EcoNI	CCTNNNNNAGG	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	208
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	2 cut(s)	250, 487
FaiI	YATR	9 cut(s)	64, 105, 203, 248, 286, 308, 367, 429, 485
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	2 cut(s)	246, 483
FauI	CCCGC	1 cut(s)	67
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	489
FokI	GGATG	4 cut(s)	17, 245, 360, 364
Fsp4HI	GCNGC	1 cut(s)	489
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	2 cut(s)	34, 278
HhaI	GCGC	1 cut(s)	449
Hin1II	CATG	2 cut(s)	250, 487
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HpaII	CCGG	2 cut(s)	34, 278
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	221
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	338
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	1 cut(s)	192
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	250, 487
HspAI	GCGC	1 cut(s)	447
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 81, 379
LpnPI	CCDG	7 cut(s)	47, 81, 168, 202, 206, 291, 359
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	3 cut(s)	5, 83, 381
MboI	GATC	3 cut(s)	3, 81, 379
MboII	GAAGA	3 cut(s)	217, 339, 434
MfeI	CAATTG	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	5 cut(s)	100, 208, 213, 453, 475
MluNI	TGGCCA	1 cut(s)	356
MnlI	CCTC	4 cut(s)	64, 171, 181, 393
Mox20I	TGGCCA	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	1 cut(s)	474
Msp20I	TGGCCA	1 cut(s)	356
MspI	CCGG	2 cut(s)	34, 278
MspR9I	CCNGG	2 cut(s)	35, 279
MunI	CAATTG	1 cut(s)	213
MvnI	CGCG	2 cut(s)	124, 447
NciI	CCSGG	2 cut(s)	35, 279
NdeII	GATC	3 cut(s)	3, 81, 379
NlaIII	CATG	2 cut(s)	250, 487
NmeAIII	GCCGAG	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	490
PshBI	ATTAAT	1 cut(s)	474
RsaI	GTAC	2 cut(s)	242, 296
RsaNI	GTAC	2 cut(s)	241, 295
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	3 cut(s)	3, 81, 379
ScrFI	CCNGG	2 cut(s)	35, 279
SetI	ASST	5 cut(s)	56, 173, 182, 242, 493
Sse9I	AATT	5 cut(s)	100, 208, 213, 453, 475
SsiI	CCGC	2 cut(s)	74, 124
StyD4I	CCNGG	2 cut(s)	33, 277
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	4 cut(s)	56, 163, 173, 385
TasI	AATT	5 cut(s)	100, 208, 213, 453, 475
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	488
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	218, 235
TspGWI	ACGGA	2 cut(s)	81, 143
TspRI	CASTG	1 cut(s)	18
VspI	ATTAAT	1 cut(s)	474
XagI	CCTNNNNNAGG	1 cut(s)	175
XapI	RAATTY	2 cut(s)	208, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.